IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
140	 34.54	0	188001..189830	+	609	187931053	msbA	FTM_0171	-	lipid A export permease/ATP-binding protein MsbA
141	 32.61	0	189836..190804	+	322	187931054	lpxK	FTM_0172	-	tetraacyldisaccharide 4'-kinase
142	 35.04	0	190900..193593	+	897	187931055	polA	FTM_0173	-	DNA polymerase I
143	 34.62	0	193613..194389	+	258	187931056	-	FTM_0174	-	type III pantothenate kinase 1
144	 36.79	+1	194394..195638	+	414	187931057	deoB	FTM_0175	-	phosphopentomutase
145	 33.60	0	195601..196362	+	253	187931058	deoC	FTM_0176	-	deoxyribose-phosphate aldolase
146	 30.58	0	196352..197551	+	399	187931059	nupC1	FTM_0177	-	nucleoside permease NupC
147	 30.67	0	197570..198772	+	400	187931060	nupC	FTM_0178	-	nucleoside permease NupC
148	 32.22	0	198785..199414	+	209	187931061	tmk	FTM_0179	-	thymidylate kinase
149	 36.57	+1	199476..201053	+	525	187931062	prfC	FTM_0180	-	peptide chain release factor 3
150	 33.64	0	201128..202447	+	439	187931063	fimV	FTM_0181	-	type IV pili, pilus assembly protein
151	 35.14	0	202480..203475	+	331	187931064	ftsY	FTM_0182	-	signal recognition particle-docking protein FtsY
152	 33.47	0	203566..205788	+	740	187931065	uvrD	FTM_0183	-	DNA helicase II
153	 34.54	0	205907..207475	+	522	187931066	-	FTM_0184	-	ABC-type oligopeptide transport system, periplasmic component
154	 35.81	0	209380..210348	+	322	187931067	oppD	FTM_0187	-	peptide/opine/nickel uptake transporter (PepT) family protein
155	 30.92	0	211326..212528	-	400	187931068	-	FTM_0189	-	major facilitator superfamily
156	 33.85	0	212662..213243	+	193	187931069	-	FTM_0190	-	hypothetical protein
157	 31.81	0	213342..214655	+	437	187931070	-	FTM_0191	-	sugar transporter, MFS superfamily
158	 38.04	+1	214712..216220	+	502	187931071	glpK	FTM_0192	-	glycerol kinase
159	 33.99	0	217283..218815	+	510	187931072	glpD	FTM_0193	-	glycerol-3-phosphate dehydrogenase
160	 38.69	+1	218825..219589	+	254	187931073	glpF	FTM_0194	-	glycerol uptake facilitator protein
161	 27.73	-1	219593..220306	+	237	187931074	-	FTM_0195	-	hypothetical membrane protein
162	 34.54	0	220284..220781	+	165	187931075	-	FTM_0196	-	small conductance mechanosensitive ion channel (MscS) family protein
163	 42.03	+2	222659..223843	+	394	187931076	tufA	FTM_0201	-	translation elongation factor Tu
164	 34.18	0	224036..224506	+	156	187931077	secE	FTM_0203	-	preprotein translocase, subunit E, membrane protein
165	 38.76	+1	224522..225055	+	177	187931078	nusG	FTM_0204	-	transcription termination/antitermination factor NusG
166	 38.16	+1	225125..225559	+	144	187931079	rplK	FTM_0205	-	50S ribosomal protein L11
167	 37.93	+1	225562..226257	+	231	187931080	rplA	FTM_0206	-	50S ribosomal protein L1
168	 39.31	+1	226427..226945	+	172	187931081	rplJ	FTM_0207	-	50S ribosomal protein L10
169	 38.85	+1	227008..227388	+	126	187931082	rplL	FTM_0208	-	ribosomal protein L7/L12
170	 35.37	0	227542..231618	+	1358	187931083	rpoB	FTM_0209	-	DNA-directed RNA polymerase, beta subunit
171	 36.72	+1	231680..235933	+	1417	187931084	rpoC	FTM_0210	-	DNA-directed RNA polymerase, beta' subunit
172	 29.11	-1	236036..236272	+	78	187931085	-	FTM_0211	-	hypothetical membrane protein
173	 35.61	0	236272..237282	+	336	187931086	gcp	FTM_0212	-	O-sialoglycoprotein endopeptidase
174	 34.02	0	237396..238562	+	388	187931087	-	FTM_0213	-	fatty acid desaturase
175	 35.83	0	238774..239934	-	386	187931088	metK	FTM_0214	-	S-adenosylmethionine synthetase
176	 38.55	+1	240228..240476	+	82	187931089	rpsP	FTM_0215	-	30S ribosomal protein S16
177	 32.16	0	240519..241028	+	169	187931090	rimM	FTM_0216	-	16S rRNA processing protein RimM
178	 35.84	0	241431..242189	+	252	187931091	trmD	FTM_0217	-	tRNA (guanine-N1)-methyltransferase
179	 33.62	0	242189..242536	+	115	187931092	rplS	FTM_0218	-	50S ribosomal protein L19
180	 35.04	0	242702..243580	+	292	187931093	xerD	FTM_0219	-	tyrosine recombinase XerD
181	 32.48	0	244554..245138	+	194	187931094	-	FTM_0221	-	acid phosphatase, HAD superfamily protein
182	 35.90	0	247820..248287	+	155	187931095	-	FTM_0224	-	(Di)nucleoside polyphosphate hydrolase
183	 28.87	-1	248297..248923	-	208	187931096	nudH	FTM_0225	-	dGTP pyrophosphohydrolase
184	 32.76	0	248997..249521	+	174	187931097	ampD	FTM_0226	-	N-acetylmuramoyl-L-alanine amidase, protein AmpD
185	 34.50	0	249569..251452	-	627	187931098	parE	FTM_0227	-	DNA topoisomerase IV, B subunit
186	 34.43	0	251543..252724	-	393	187931099	-	FTM_0228	-	drug:H+ antiporter-1 (DHA1) family protein
187	 35.08	0	252724..254094	-	456	187931100	-	FTM_0229	-	outer membrane assembly lipoprotein YfgL
188	 31.30	0	254097..254735	-	212	187931101	-	FTM_0230	-	hypothetical protein
189	 32.77	0	254915..256159	+	414	187931102	hemA	FTM_0231	-	glutamyl-tRNA reductase
190	 39.04	+1	256160..257245	+	361	187931103	prfA	FTM_0232	-	peptide chain release factor 1
191	 31.11	0	257238..258092	+	284	187931104	hemK	FTM_0233	-	modification methylase, HemK family
192	 38.78	+1	259511..261145	-	544	187931105	groEL	FTM_0235	-	chaperonin GroEL (HSP60 family)
193	 37.15	+1	261183..261470	-	95	187931106	groES	FTM_0236	-	co-chaperonin GroES (HSP10)
194	 28.28	-1	261720..262154	+	144	187931107	-	FTM_0237	-	hypothetical protein
195	 29.93	0	262795..263559	+	254	187931108	-	FTM_0239	-	hypothetical protein
196	 33.33	0	266052..266753	+	233	187931109	proQ	FTM_0243	-	activator of osmoprotectant transporter ProP
197	 31.32	0	266776..267321	+	181	187931110	-	FTM_0244	-	hypothetical protein
198	 33.88	0	267336..268790	-	484	187931111	trkH	FTM_0245	-	K+ transporter (Trk) family protein
199	 30.88	0	268902..269105	+	67	187931112	-	FTM_0246	-	hypothetical protein
200	 27.83	-1	269487..270104	-	205	187931113	lolA	FTM_0247	-	lipoprotein releasing system, subunit A, outer membrane lipoproteins carrier
201	 36.70	+1	270105..272600	-	831	187931114	ftsK	FTM_0248	-	cell division protein FtsK
202	 33.33	0	272722..273390	+	222	187931115	-	FTM_0249	-	phosphatidic acid phosphatase, PAP2 superfamily
203	 35.26	0	273637..275091	+	484	187931116	lysP	FTM_0250	-	lysine:H+ symporter
204	 33.96	0	275100..275738	+	212	187931117	-	FTM_0251	-	hypothetical protein
205	 39.92	+2	275758..276744	+	328	187931118	glpX	FTM_0252	-	fructose-1,6-bisphosphatase, class II
206	 31.55	0	278587..280266	+	559	187931119	-	FTM_0254	-	glycosyl transferase, group 2
207	 32.11	0	280277..281584	+	435	187931120	-	FTM_0255	-	transporter-associated protein, HlyC/CorC family
208	 32.76	0	281655..282002	+	115	187931121	-	FTM_0256	-	hypothetical protein
209	 30.11	0	284318..284938	+	206	187931122	-	FTM_0259	-	pilus assembly protein
210	 26.22	-1	288762..289253	-	163	187931123	-	FTM_0263	-	acetyltransferase
211	 31.55	0	289279..290457	-	392	187931124	-	FTM_0264	-	drug:H+ antiporter-1
212	 33.44	0	290513..291457	-	314	187931125	-	FTM_0265	-	modification methylase, HemK family
213	 34.78	0	291461..292840	-	459	187931126	cysS	FTM_0266	-	cysteinyl-tRNA synthetase
214	 26.95	-1	294289..294570	-	93	187931127	-	FTM_0269	-	hypothetical membrane protein
215	 33.33	0	294583..296085	-	500	187931128	-	FTM_0270	-	amino acid-polyamine-organocation family protein
216	 25.54	-2	296450..297193	-	247	187931129	-	FTM_0271	-	hypothetical protein
217	 32.33	0	297195..297890	-	231	187931130	ubiG	FTM_0272	-	3-demethylubiquinone 3-methyltransferase/ 2-octaprenyl-6-hydroxyphenol methylase
218	 37.15	+1	298032..299132	+	366	187931131	-	FTM_0273	-	VacJ family protein
219	 30.58	0	304236..304961	+	241	187931132	-	FTM_0277	-	hypothetical protein
220	 31.21	0	311395..311865	+	156	187931133	-	FTM_0281	-	hypothetical protein
221	 32.48	0	312002..312826	+	274	187931134	-	FTM_0282	-	short-chain dehydrogenase/reductase
222	 32.37	0	312848..314197	-	449	187931135	-	FTM_0283	-	amino acid-polyamine-organocation (APC) superfamily protein
223	 31.16	0	314456..315328	-	290	187931136	-	FTM_0284	-	hypothetical protein
224	 32.89	0	316274..316723	-	149	187931137	-	FTM_0285	-	hypothetical protein
225	 34.09	0	316732..317127	-	131	187931138	-	FTM_0286	-	hypothetical protein
226	 33.47	0	317210..317941	+	243	187931139	-	FTM_0287	-	oxidoreductase
227	 36.11	0	318063..318278	+	71	187931140	rpmE	FTM_0288	-	50S ribosomal protein L31
228	 33.07	0	318489..319994	-	501	187931141	gshA	FTM_0289	-	glutamate-cysteine ligase
229	 30.35	0	320047..321588	-	513	187931142	mviN	FTM_0290	-	multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter
230	 34.84	0	321611..322672	-	353	187931143	-	FTM_0291	-	hypothetical protein
231	 33.09	0	322755..323165	-	136	187931144	-	FTM_0292	-	hypothetical protein
232	 32.06	0	323143..324324	-	393	187931145	folC	FTM_0293	-	folylpoly-gamma-glutamate synthetase/ dihydrofolate synthetase
233	 37.10	+1	324339..325241	-	300	187931146	accD	FTM_0294	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
234	 35.93	0	325283..325705	-	140	187931147	ndk	FTM_0295	-	nucleoside diphosphate kinase
235	 37.17	+1	325778..327418	-	546	187931148	pyrG	FTM_0296	-	CTP synthase (UTP-ammonia lyase)
236	 28.42	-1	329475..330431	-	318	187931149	-	FTM_0298	-	hypothetical membrane protein
237	 25.98	-2	332556..333521	+	321	187931150	-	FTM_0299	-	glycosyltransferase sugar-binding region containing DXD motif family
238	 32.91	0	334630..336516	+	628	187931151	htpG	FTM_0300	-	chaperone Hsp90, heat shock protein HtpG
239	 38.42	+1	337979..339493	-	504	187931152	fumA	FTM_0301	-	fumarate hydratase, class I
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.