IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1294	 33.85	0	1709725..1711269	+	514	187932206	-	FTM_1599	-	acid phosphatase
1295	 35.24	0	1715402..1716238	-	278	187932207	uspA	FTM_1604	-	universal stress protein
1296	 31.47	0	1716314..1719055	-	913	187932208	-	FTM_1605	-	DNA/RNA helicase
1297	 33.33	0	1719039..1719818	-	259	187932209	-	FTM_1606	-	hypothetical protein
1298	 34.57	0	1719891..1720454	-	187	187932210	-	FTM_1607	-	predicted hydrolase of the HAD superfamily
1299	 33.79	0	1721277..1722149	-	290	187932211	-	FTM_1609	-	SAM-dependent methyltransferase
1300	 34.00	0	1722142..1723497	-	451	187932212	murC	FTM_1610	-	UDP-N-acetylmuramate-alanine ligase
1301	 35.14	0	1723564..1724337	-	257	187932213	-	FTM_1611	-	shikimate 5-dehydrogenase
1302	 39.22	+1	1724464..1724922	+	152	187932214	-	FTM_1612	-	hypothetical protein
1303	 36.30	+1	1725014..1725148	+	44	187932215	rpmH	FTM_1613	-	50S ribosomal protein L34
1304	 31.36	0	1725138..1725491	+	117	187932216	rnpA	FTM_1614	-	ribonuclease P protein component
1305	 34.14	0	1725467..1725715	+	82	187932217	-	FTM_1615	-	hypothetical protein
1306	 33.94	0	1725724..1727379	+	551	187932218	-	FTM_1616	-	hypothetical membrane protein
1307	 33.00	0	1727386..1728285	+	299	187932219	-	FTM_1617	-	LPS fatty acid acyltransferase
1308	 33.33	0	1728346..1729269	+	307	187932220	-	FTM_1618	-	LPS fatty acid acyltransferase
1309	 36.52	+1	1729281..1729688	+	135	187932221	pilE	FTM_1619	-	Type IV pili, pilus assembly protein
1310	 34.56	0	1729728..1730297	+	189	187932222	efp	FTM_1620	-	translation elongation factor P
1311	 33.89	0	1730300..1730836	+	178	187932223	orn	FTM_1621	-	oligoribonuclease (3'->5' exoribonuclease)
1312	 37.21	+1	1734512..1737145	-	877	187932224	ppdK	FTM_1625	-	phosphoenolpyruvate synthase/pyruvate phosphate dikinase
1313	 33.29	0	1737972..1740215	-	747	187932225	feoB	FTM_1626	-	ferrous iron transport protein B
1314	 32.17	0	1741641..1743794	-	717	187932226	priA	FTM_1628	-	primosomal protein N'
1315	 30.56	0	1743791..1744366	-	191	187932227	-	FTM_1629	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
1316	 29.29	-1	1744385..1745572	-	395	187932228	rbn	FTM_1630	-	tRNA processing ribonuclease BN
1317	 39.70	+2	1745579..1746175	+	198	187932229	wrbA	FTM_1631	-	trp repressor binding protein
1318	 38.49	+1	1746186..1746650	+	154	187932230	-	FTM_1632	-	outer membrane lipoprotein
1319	 32.35	0	1746771..1747994	+	407	187932231	-	FTM_1633	-	major facilitator superfamily (MFS) transport protein
1320	 34.53	0	1748069..1748986	+	305	187932232	-	FTM_1634	-	manganese/Zinc/Iron chelate uptake transporter family protein
1321	 32.30	0	1748987..1749664	+	225	187932233	-	FTM_1635	-	ATP-binding cassette (ABC) superfamily protein
1322	 33.10	0	1749606..1750448	+	280	187932234	-	FTM_1636	-	manganese/zinc/iron chelate uptake transporter (MZT) family protein
1323	 32.21	0	1751270..1751803	-	177	187932235	hpt	FTM_1638	-	hypoxanthine-guanine phosphoribosyltransferase
1324	 35.35	0	1751807..1753093	-	428	187932236	purA	FTM_1639	-	adenylosuccinate synthetase
1325	 36.69	+1	1753270..1754817	+	515	187932237	purH	FTM_1640	-	AICAR transformylase/IMP cyclohydrolase
1326	 32.56	0	1758946..1759464	-	172	187932238	blc	FTM_1643	-	outer membrane lipoprotein blc
1327	 30.78	0	1759550..1760527	+	325	187932239	holA	FTM_1644	-	DNA polymerase III, delta subunit
1328	 38.15	+1	1760647..1761684	+	345	187932240	glnA	FTM_1645	-	glutamine synthetase, catalytic domain
1329	 30.94	0	1764285..1764827	+	180	187932241	-	FTM_1648	-	hypothetical protein
1330	 35.47	0	1765212..1766942	-	576	187932242	lysU	FTM_1649	-	lysyl-tRNA synthetase
1331	 38.75	+1	1767075..1768052	-	325	187932243	prfB	FTM_1650	-	peptide chain release factor 2
1332	 32.85	0	1768325..1769965	+	546	187932244	dnaX	FTM_1651	-	DNA polymerase III subunit gamma/tau
1333	 34.85	0	1769980..1770837	-	285	187932245	lpxC	FTM_1652	-	UDP-3-0-acyl N-acetylglucosamine deacetylase
1334	 38.92	+1	1770863..1772008	-	381	187932246	ftsZ	FTM_1653	-	cell division protein FtsZ
1335	 36.34	+1	1772052..1773314	-	420	187932247	ftsA	FTM_1654	-	cell division protein FtsA
1336	 29.09	-1	1773416..1774099	-	227	187932248	ftsQ	FTM_1655	-	cell division protein FtsQ
1337	 35.28	0	1774991..1775452	-	153	187932249	-	FTM_1657	-	zinc-binding protein
1338	 36.21	0	1775600..1777270	+	556	187932250	rpsA	FTM_1658	-	30S ribosomal protein S1
1339	 30.39	0	1777387..1777929	+	180	187932251	-	FTM_1659	-	Sua5/YciO/YrdC family protein
1340	 29.42	-1	1778027..1778563	+	178	187932252	-	FTM_1660	-	hypothetical protein
1341	 30.19	0	1778960..1779850	-	296	187932253	plsC	FTM_1661	-	1-acylglycerol-3-phosphate acyltransferase
1342	 30.20	0	1782121..1783590	+	489	187932254	rimK	FTM_1663	-	glutathione synthase/ribosomal protein S6 modification enzyme
1343	 34.23	0	1785177..1785959	+	260	187932255	-	FTM_1666	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
1344	 28.77	-1	1785953..1786522	-	189	187932256	-	FTM_1667	-	YggT family membrane protein
1345	 39.17	+1	1789187..1793059	-	1290	187932257	purL	FTM_1671	-	phosphoribosylformylglycinamidine synthase
1346	 36.89	+1	1793059..1794549	-	496	187932258	purF	FTM_1672	-	amidophosphoribosyltransferase
1347	 31.78	0	1795999..1796640	-	213	187932259	-	FTM_1674	-	phosphopantetheinyl transferase
1348	 35.95	0	1796649..1798178	-	509	187932260	tolC	FTM_1675	-	outer membrane efflux protein, TolC
1349	 33.66	0	1798187..1798807	-	206	187932261	pcm	FTM_1676	-	protein-L-isoaspartate O-methyltransferase
1350	 37.16	+1	1799127..1800458	+	443	187932262	-	FTM_1677	-	peptidase U32 family
1351	 36.29	+1	1800499..1801680	-	393	187932263	-	FTM_1678	-	drug:H+ antiporter-1 (DHA1) family protein
1352	 35.15	0	1801855..1803282	+	475	187932264	nhaD	FTM_1679	-	Na+:H+ antiporter, NhaD
1353	 33.17	0	1804935..1806809	-	624	187932265	-	FTM_1681	-	amino acid-polyamine-organocation (APC) superfamily protein
1354	 37.31	+1	1806816..1807820	-	334	187932266	-	FTM_1682	-	GTP-binding protein Obg/CgtA family
1355	 32.00	0	1807896..1809092	-	398	187932267	tyrP	FTM_1683	-	tyrosine permease
1356	 38.76	+1	1809539..1810183	-	214	187932268	-	FTM_1684	-	outer membrane associated protein
1357	 33.04	0	1810963..1813644	-	893	187932269	kdpD	FTM_1686	-	two component regulator, sensor histidine kinase KdpD
1358	 33.51	0	1813748..1814302	-	184	187932270	kdpC	FTM_1687	-	potassium-transporting ATPase C chain
1359	 36.13	0	1814319..1816358	-	679	187932271	kdpB	FTM_1688	-	potassium-transporting ATPase B chain
1360	 33.33	0	1816368..1818089	-	573	187932272	kdpA	FTM_1689	-	potassium-ATPase uptake protein, A chain
1361	 27.20	-1	1825027..1827489	+	820	187932273	pdpA2	FTM_1696	-	hypothetical protein
1362	 26.33	-1	1827494..1830775	+	1093	187932274	pdpB2	FTM_1697	-	hypothetical protein
1363	 23.81	-2	1830765..1831142	+	125	187932275	-	FTM_1698	-	lipoprotein, putative
1364	 30.30	0	1831155..1831649	+	164	187932276	-	FTM_1699	-	hypothetical protein
1365	 23.96	-2	1831654..1833318	+	554	187932277	-	FTM_1700	-	hypothetical protein
1366	 33.52	0	1833386..1833907	+	173	187932278	-	FTM_1701	-	hypothetical protein
1367	 26.28	-1	1833920..1835350	+	476	187932279	-	FTM_1702	-	hypothetical protein
1368	 28.16	-1	1835363..1835980	+	205	187932280	-	FTM_1703	-	hypothetical protein
1369	 26.13	-1	1836002..1837153	+	383	187932281	-	FTM_1704	-	hypothetical protein
1370	 23.39	-2	1837119..1837892	+	257	187932282	-	FTM_1705	-	hypothetical protein
1371	 26.51	-1	1837932..1841918	+	1328	187932283	pdpC2	FTM_1706	-	PdpC
1372	 24.83	-2	1841936..1842511	+	191	187932284	-	FTM_1707	-	hypothetical protein
1373	 29.32	-1	1842518..1843714	-	398	187932285	iglD2	FTM_1708	-	intracellular growth locus protein D
1374	 34.76	0	1843735..1844364	-	209	187932286	iglC2	FTM_1709	-	intracellular growth locus protein C
1375	 31.23	0	1844381..1845901	-	506	187932287	iglB2	FTM_1710	-	intracellular growth locus protein B
1376	 31.71	0	1845915..1846469	-	184	187932288	iglA2	FTM_1711	-	intracellular growth locus protein A
1377	 30.04	0	1846550..1850281	-	1243	187932289	pdpD2	FTM_1712	-	hypothetical protein
1378	 34.49	0	1853681..1854889	+	402	187932290	-	FTM_1716	-	metabolite:H+ symporter (MHS) family protein
1379	 35.08	0	1855064..1856842	+	592	187932291	aspS	FTM_1717	-	aspartyl-tRNA synthetase
1380	 35.81	0	1858984..1861080	-	698	187932292	pta	FTM_1720	-	phosphate acetyltransferase
1381	 33.94	0	1861090..1862244	-	384	187932293	ackA	FTM_1721	-	propionate kinase 2 / acetate kinase A
1382	 34.38	0	1862350..1862826	-	158	187932294	ssb	FTM_1722	-	single-strand DNA binding protein
1383	 28.26	-1	1863000..1863452	-	150	187932295	recX	FTM_1723	-	regulatory protein RecX, inhibitor of RecA
1384	 38.33	+1	1863439..1864518	-	359	187932296	recA	FTM_1724	-	recombinase A protein RecA
1385	 35.78	0	1864540..1864989	-	149	187932297	secB1	FTM_1725	-	preprotein translocase, subunit B
1386	 30.26	0	1865016..1865438	-	140	187932298	-	FTM_1726	-	rhodanese-related sulfurtransferase
1387	 36.30	+1	1865574..1866113	-	179	187932299	-	FTM_1727	-	outer membrane protein
1388	 35.06	0	1866203..1867126	-	307	187932300	-	FTM_1728	-	serine peptidase, S49 family
1389	 35.51	0	1867657..1869354	+	565	187932301	idpC	FTM_1730	-	indolepyruvate decarboxylase
1390	 38.21	+1	1871639..1873318	-	559	187932302	-	FTM_1733	-	(putative) drug resistance ATPase-1 (Drug RA1) family protein
1391	 30.11	0	1873531..1874772	+	413	187932303	-	FTM_1734	-	metabolite:H+ symporter (MHS) family protein
1392	 21.43	-2	1875161..1875286	-	41	187932304	-	FTM_1735	-	hypothetical protein
1393	 30.78	0	1875332..1876312	+	326	187932305	-	FTM_1736	-	hypothetical protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.