IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1270	 34.16	0	1676971..1677573	-	200	187932182	cyoC	FTM_1569	-	cytochrome bo terminal oxidase subunit III
1271	 37.52	+1	1677570..1679600	-	676	187932183	cyoB	FTM_1570	-	cytochrome bo terminal oxidase subunit I
1272	 35.77	0	1679639..1680541	-	300	187932184	cyoA	FTM_1571	-	cytochrome bo terminal oxidase subunit II
1273	 33.11	0	1680901..1682268	+	455	187932185	-	FTM_1572	-	major facilitator superfamily (MFS) transport protein
1274	 37.04	+1	1682722..1684476	+	584	187932186	cydA	FTM_1573	-	cytochrome bd-I terminal oxidase subunit I
1275	 35.68	0	1684487..1685680	+	397	187932187	cydB	FTM_1574	-	cytochrome bd-I terminal oxidase subunit II
1276	 28.76	-1	1685913..1686611	+	232	187932188	-	FTM_1575	-	polar amino acid uptake transporter
1277	 28.17	-1	1690304..1691272	-	322	187932189	-	FTM_1578	-	hypothetical protein
1278	 33.06	0	1691462..1693318	+	618	187932190	-	FTM_1579	-	ribonuclease II family protein
1279	 33.49	0	1693664..1694317	+	217	187932191	-	FTM_1580	-	acarboxylesterase/phospholipase family protein
1280	 34.55	0	1694314..1695216	+	300	187932192	hemC	FTM_1581	-	hydroxymethylbilane synthase (porphobilinogen deaminase)
1281	 32.06	0	1695217..1695609	+	130	187932193	crcB	FTM_1582	-	CrcB family protein
1282	 32.60	0	1695606..1696013	+	135	187932194	-	FTM_1583	-	hypothetical membrane protein
1283	 36.84	+1	1696156..1696725	+	189	187932195	-	FTM_1584	-	hypothetical membrane protein
1284	 32.76	0	1696722..1696895	-	57	187932196	-	FTM_1585	-	hypothetical protein
1285	 34.11	0	1697025..1698824	+	599	187932197	-	FTM_1586	-	ABC-type anion transport system, duplicated permease component
1286	 37.13	+1	1698843..1700159	+	438	187932198	-	FTM_1587	-	ABC transporter, ATP-binding protein
1287	 32.43	0	1701872..1703758	+	628	187932199	-	FTM_1589	-	monovalent cation:proton antiporter
1288	 36.85	+1	1703743..1704282	+	179	187932200	paaY	FTM_1590	-	carbonic anhydrase/acetyltransferase, isoleucine patch superfamily
1289	 31.47	0	1704233..1704877	+	214	187932201	lolB	FTM_1591	-	outer membrane lipoprotein LolB
1290	 31.16	0	1704865..1705692	+	275	187932202	ispE	FTM_1592	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1291	 30.23	0	1707223..1707738	-	171	187932203	-	FTM_1596	-	cytochrome b561 family protein
1292	 35.74	0	1707819..1708814	-	331	187932204	-	FTM_1597	-	inorganic phosphate transporter (PiT) family protein
1293	 30.44	0	1708832..1709488	-	218	187932205	-	FTM_1598	-	hypothetical protein
1294	 33.85	0	1709725..1711269	+	514	187932206	-	FTM_1599	-	acid phosphatase
1295	 35.24	0	1715402..1716238	-	278	187932207	uspA	FTM_1604	-	universal stress protein
1296	 31.47	0	1716314..1719055	-	913	187932208	-	FTM_1605	-	DNA/RNA helicase
1297	 33.33	0	1719039..1719818	-	259	187932209	-	FTM_1606	-	hypothetical protein
1298	 34.57	0	1719891..1720454	-	187	187932210	-	FTM_1607	-	predicted hydrolase of the HAD superfamily
1299	 33.79	0	1721277..1722149	-	290	187932211	-	FTM_1609	-	SAM-dependent methyltransferase
1300	 34.00	0	1722142..1723497	-	451	187932212	murC	FTM_1610	-	UDP-N-acetylmuramate-alanine ligase
1301	 35.14	0	1723564..1724337	-	257	187932213	-	FTM_1611	-	shikimate 5-dehydrogenase
1302	 39.22	+1	1724464..1724922	+	152	187932214	-	FTM_1612	-	hypothetical protein
1303	 36.30	+1	1725014..1725148	+	44	187932215	rpmH	FTM_1613	-	50S ribosomal protein L34
1304	 31.36	0	1725138..1725491	+	117	187932216	rnpA	FTM_1614	-	ribonuclease P protein component
1305	 34.14	0	1725467..1725715	+	82	187932217	-	FTM_1615	-	hypothetical protein
1306	 33.94	0	1725724..1727379	+	551	187932218	-	FTM_1616	-	hypothetical membrane protein
1307	 33.00	0	1727386..1728285	+	299	187932219	-	FTM_1617	-	LPS fatty acid acyltransferase
1308	 33.33	0	1728346..1729269	+	307	187932220	-	FTM_1618	-	LPS fatty acid acyltransferase
1309	 36.52	+1	1729281..1729688	+	135	187932221	pilE	FTM_1619	-	Type IV pili, pilus assembly protein
1310	 34.56	0	1729728..1730297	+	189	187932222	efp	FTM_1620	-	translation elongation factor P
1311	 33.89	0	1730300..1730836	+	178	187932223	orn	FTM_1621	-	oligoribonuclease (3'->5' exoribonuclease)
1312	 37.21	+1	1734512..1737145	-	877	187932224	ppdK	FTM_1625	-	phosphoenolpyruvate synthase/pyruvate phosphate dikinase
1313	 33.29	0	1737972..1740215	-	747	187932225	feoB	FTM_1626	-	ferrous iron transport protein B
1314	 32.17	0	1741641..1743794	-	717	187932226	priA	FTM_1628	-	primosomal protein N'
1315	 30.56	0	1743791..1744366	-	191	187932227	-	FTM_1629	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
1316	 29.29	-1	1744385..1745572	-	395	187932228	rbn	FTM_1630	-	tRNA processing ribonuclease BN
1317	 39.70	+2	1745579..1746175	+	198	187932229	wrbA	FTM_1631	-	trp repressor binding protein
1318	 38.49	+1	1746186..1746650	+	154	187932230	-	FTM_1632	-	outer membrane lipoprotein
1319	 32.35	0	1746771..1747994	+	407	187932231	-	FTM_1633	-	major facilitator superfamily (MFS) transport protein
1320	 34.53	0	1748069..1748986	+	305	187932232	-	FTM_1634	-	manganese/Zinc/Iron chelate uptake transporter family protein
1321	 32.30	0	1748987..1749664	+	225	187932233	-	FTM_1635	-	ATP-binding cassette (ABC) superfamily protein
1322	 33.10	0	1749606..1750448	+	280	187932234	-	FTM_1636	-	manganese/zinc/iron chelate uptake transporter (MZT) family protein
1323	 32.21	0	1751270..1751803	-	177	187932235	hpt	FTM_1638	-	hypoxanthine-guanine phosphoribosyltransferase
1324	 35.35	0	1751807..1753093	-	428	187932236	purA	FTM_1639	-	adenylosuccinate synthetase
1325	 36.69	+1	1753270..1754817	+	515	187932237	purH	FTM_1640	-	AICAR transformylase/IMP cyclohydrolase
1326	 32.56	0	1758946..1759464	-	172	187932238	blc	FTM_1643	-	outer membrane lipoprotein blc
1327	 30.78	0	1759550..1760527	+	325	187932239	holA	FTM_1644	-	DNA polymerase III, delta subunit
1328	 38.15	+1	1760647..1761684	+	345	187932240	glnA	FTM_1645	-	glutamine synthetase, catalytic domain
1329	 30.94	0	1764285..1764827	+	180	187932241	-	FTM_1648	-	hypothetical protein
1330	 35.47	0	1765212..1766942	-	576	187932242	lysU	FTM_1649	-	lysyl-tRNA synthetase
1331	 38.75	+1	1767075..1768052	-	325	187932243	prfB	FTM_1650	-	peptide chain release factor 2
1332	 32.85	0	1768325..1769965	+	546	187932244	dnaX	FTM_1651	-	DNA polymerase III subunit gamma/tau
1333	 34.85	0	1769980..1770837	-	285	187932245	lpxC	FTM_1652	-	UDP-3-0-acyl N-acetylglucosamine deacetylase
1334	 38.92	+1	1770863..1772008	-	381	187932246	ftsZ	FTM_1653	-	cell division protein FtsZ
1335	 36.34	+1	1772052..1773314	-	420	187932247	ftsA	FTM_1654	-	cell division protein FtsA
1336	 29.09	-1	1773416..1774099	-	227	187932248	ftsQ	FTM_1655	-	cell division protein FtsQ
1337	 35.28	0	1774991..1775452	-	153	187932249	-	FTM_1657	-	zinc-binding protein
1338	 36.21	0	1775600..1777270	+	556	187932250	rpsA	FTM_1658	-	30S ribosomal protein S1
1339	 30.39	0	1777387..1777929	+	180	187932251	-	FTM_1659	-	Sua5/YciO/YrdC family protein
1340	 29.42	-1	1778027..1778563	+	178	187932252	-	FTM_1660	-	hypothetical protein
1341	 30.19	0	1778960..1779850	-	296	187932253	plsC	FTM_1661	-	1-acylglycerol-3-phosphate acyltransferase
1342	 30.20	0	1782121..1783590	+	489	187932254	rimK	FTM_1663	-	glutathione synthase/ribosomal protein S6 modification enzyme
1343	 34.23	0	1785177..1785959	+	260	187932255	-	FTM_1666	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
1344	 28.77	-1	1785953..1786522	-	189	187932256	-	FTM_1667	-	YggT family membrane protein
1345	 39.17	+1	1789187..1793059	-	1290	187932257	purL	FTM_1671	-	phosphoribosylformylglycinamidine synthase
1346	 36.89	+1	1793059..1794549	-	496	187932258	purF	FTM_1672	-	amidophosphoribosyltransferase
1347	 31.78	0	1795999..1796640	-	213	187932259	-	FTM_1674	-	phosphopantetheinyl transferase
1348	 35.95	0	1796649..1798178	-	509	187932260	tolC	FTM_1675	-	outer membrane efflux protein, TolC
1349	 33.66	0	1798187..1798807	-	206	187932261	pcm	FTM_1676	-	protein-L-isoaspartate O-methyltransferase
1350	 37.16	+1	1799127..1800458	+	443	187932262	-	FTM_1677	-	peptidase U32 family
1351	 36.29	+1	1800499..1801680	-	393	187932263	-	FTM_1678	-	drug:H+ antiporter-1 (DHA1) family protein
1352	 35.15	0	1801855..1803282	+	475	187932264	nhaD	FTM_1679	-	Na+:H+ antiporter, NhaD
1353	 33.17	0	1804935..1806809	-	624	187932265	-	FTM_1681	-	amino acid-polyamine-organocation (APC) superfamily protein
1354	 37.31	+1	1806816..1807820	-	334	187932266	-	FTM_1682	-	GTP-binding protein Obg/CgtA family
1355	 32.00	0	1807896..1809092	-	398	187932267	tyrP	FTM_1683	-	tyrosine permease
1356	 38.76	+1	1809539..1810183	-	214	187932268	-	FTM_1684	-	outer membrane associated protein
1357	 33.04	0	1810963..1813644	-	893	187932269	kdpD	FTM_1686	-	two component regulator, sensor histidine kinase KdpD
1358	 33.51	0	1813748..1814302	-	184	187932270	kdpC	FTM_1687	-	potassium-transporting ATPase C chain
1359	 36.13	0	1814319..1816358	-	679	187932271	kdpB	FTM_1688	-	potassium-transporting ATPase B chain
1360	 33.33	0	1816368..1818089	-	573	187932272	kdpA	FTM_1689	-	potassium-ATPase uptake protein, A chain
1361	 27.20	-1	1825027..1827489	+	820	187932273	pdpA2	FTM_1696	-	hypothetical protein
1362	 26.33	-1	1827494..1830775	+	1093	187932274	pdpB2	FTM_1697	-	hypothetical protein
1363	 23.81	-2	1830765..1831142	+	125	187932275	-	FTM_1698	-	lipoprotein, putative
1364	 30.30	0	1831155..1831649	+	164	187932276	-	FTM_1699	-	hypothetical protein
1365	 23.96	-2	1831654..1833318	+	554	187932277	-	FTM_1700	-	hypothetical protein
1366	 33.52	0	1833386..1833907	+	173	187932278	-	FTM_1701	-	hypothetical protein
1367	 26.28	-1	1833920..1835350	+	476	187932279	-	FTM_1702	-	hypothetical protein
1368	 28.16	-1	1835363..1835980	+	205	187932280	-	FTM_1703	-	hypothetical protein
1369	 26.13	-1	1836002..1837153	+	383	187932281	-	FTM_1704	-	hypothetical protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.