IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1232	 33.33	0	1638591..1638908	-	105	187932144	rpsJ	FTM_1528	-	30S ribosomal protein S10
1233	 40.57	+2	1638929..1641043	-	704	187932145	fusA	FTM_1529	-	translation elongation factor G
1234	 39.24	+1	1641058..1641531	-	157	187932146	rpsG	FTM_1530	-	30S ribosomal protein S7
1235	 42.93	+2	1641570..1641944	-	124	187932147	rpsL	FTM_1531	-	30S ribosomal protein S12
1236	 34.84	0	1642079..1642675	-	198	187932148	pgsA	FTM_1532	-	phosphatidylglycerophosphate synthetase
1237	 37.36	+1	1642679..1643125	-	148	187932149	dut	FTM_1533	-	dUTP pyrophosphatase (Deoxyuridine 5'- triphosphate nucleotidohydrolase
1238	 33.08	0	1643135..1643929	-	264	187932150	cdsA	FTM_1534	-	phosphatidate cytidylyltransferase
1239	 35.55	0	1643943..1644665	-	240	187932151	uppS	FTM_1535	-	undecaprenyl diphosphate synthase
1240	 34.95	0	1644749..1645306	-	185	187932152	frr	FTM_1536	-	ribosome recycling factor
1241	 37.07	+1	1645335..1646084	-	249	187932153	pyrH	FTM_1537	-	uridylate kinase
1242	 38.85	+1	1646088..1646957	-	289	187932154	tsf	FTM_1538	-	translation elongation factor EF-Ts
1243	 35.42	0	1646979..1647698	-	239	187932155	rpsB	FTM_1539	-	30S ribosomal protein S2
1244	 27.62	-1	1647890..1648432	+	180	187932156	folA	FTM_1540	-	dihydrofolate reductase
1245	 33.98	0	1648514..1649437	+	307	187932157	-	FTM_1541	-	hypothetical protein
1246	 30.34	0	1652284..1653252	-	322	187932158	-	FTM_1544	-	hypothetical protein
1247	 35.54	0	1653252..1654658	-	468	187932159	gltX	FTM_1545	-	glutamyl-tRNA synthetase
1248	 35.78	0	1654788..1656179	-	463	187932160	fumC	FTM_1546	-	fumarate hydratase, class II
1249	 32.87	0	1656868..1657521	+	217	187932161	nfnB	FTM_1548	-	dihydropteridine reductase
1250	 36.61	+1	1657548..1658705	+	385	187932162	-	FTM_1549	-	L-lactate dehydrogenase
1251	 27.98	-1	1658702..1659037	-	111	187932163	-	FTM_1550	-	hypothetical membrane protein
1252	 28.23	-1	1659221..1661023	-	600	187932164	-	FTM_1551	-	hypothetical protein
1253	 36.67	+1	1661052..1663811	-	919	187932165	valS	FTM_1552	-	valyl-tRNA synthetase
1254	 31.75	0	1663943..1664383	-	146	187932166	holC	FTM_1553	-	DNA polymerase III, chi subunit
1255	 28.57	-1	1664414..1664896	-	160	187932167	-	FTM_1554	-	hypothetical membrane protein
1256	 35.28	0	1664904..1665572	-	222	187932168	pcp	FTM_1555	-	pyrrolidone carboxylylate peptidase
1257	 32.10	0	1665579..1667204	-	541	187932169	-	FTM_1556	-	hypothetical protein
1258	 29.26	-1	1667194..1668027	-	277	187932170	-	FTM_1557	-	protein of unknown function with TPR repeat region and von Willebrand factor type A domain
1259	 36.54	+1	1668018..1669016	-	332	187932171	-	FTM_1558	-	hypothetical membrane protein with von Willebrand factor type A domain
1260	 34.23	0	1669018..1670019	-	333	187932172	-	FTM_1559	-	protein of unknown function containing a von Willebrand factor type A (vWA) domain
1261	 32.29	0	1670016..1670492	-	158	187932173	-	FTM_1560	-	hypothetical protein
1262	 32.57	0	1670482..1671393	-	303	187932174	-	FTM_1561	-	hypothetical protein
1263	 37.62	+1	1671406..1672362	-	318	187932175	-	FTM_1562	-	MoxR-like ATPase
1264	 30.80	0	1672508..1672942	+	144	187932176	-	FTM_1563	-	lipoprotein, putative
1265	 34.27	0	1672949..1673800	+	283	187932177	pdxY	FTM_1564	-	pyridoxal kinase
1266	 31.03	0	1673800..1674495	+	231	187932178	-	FTM_1565	-	hypothetical protein
1267	 35.73	0	1674570..1675613	+	347	187932179	lpxD2	FTM_1566	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1268	 30.51	0	1675758..1676606	-	282	187932180	cyoE	FTM_1567	-	heme O synthase
1269	 35.44	0	1676637..1676969	-	110	187932181	cyoD	FTM_1568	-	cytochrome bo terminal oxidase subunit IV
1270	 34.16	0	1676971..1677573	-	200	187932182	cyoC	FTM_1569	-	cytochrome bo terminal oxidase subunit III
1271	 37.52	+1	1677570..1679600	-	676	187932183	cyoB	FTM_1570	-	cytochrome bo terminal oxidase subunit I
1272	 35.77	0	1679639..1680541	-	300	187932184	cyoA	FTM_1571	-	cytochrome bo terminal oxidase subunit II
1273	 33.11	0	1680901..1682268	+	455	187932185	-	FTM_1572	-	major facilitator superfamily (MFS) transport protein
1274	 37.04	+1	1682722..1684476	+	584	187932186	cydA	FTM_1573	-	cytochrome bd-I terminal oxidase subunit I
1275	 35.68	0	1684487..1685680	+	397	187932187	cydB	FTM_1574	-	cytochrome bd-I terminal oxidase subunit II
1276	 28.76	-1	1685913..1686611	+	232	187932188	-	FTM_1575	-	polar amino acid uptake transporter
1277	 28.17	-1	1690304..1691272	-	322	187932189	-	FTM_1578	-	hypothetical protein
1278	 33.06	0	1691462..1693318	+	618	187932190	-	FTM_1579	-	ribonuclease II family protein
1279	 33.49	0	1693664..1694317	+	217	187932191	-	FTM_1580	-	acarboxylesterase/phospholipase family protein
1280	 34.55	0	1694314..1695216	+	300	187932192	hemC	FTM_1581	-	hydroxymethylbilane synthase (porphobilinogen deaminase)
1281	 32.06	0	1695217..1695609	+	130	187932193	crcB	FTM_1582	-	CrcB family protein
1282	 32.60	0	1695606..1696013	+	135	187932194	-	FTM_1583	-	hypothetical membrane protein
1283	 36.84	+1	1696156..1696725	+	189	187932195	-	FTM_1584	-	hypothetical membrane protein
1284	 32.76	0	1696722..1696895	-	57	187932196	-	FTM_1585	-	hypothetical protein
1285	 34.11	0	1697025..1698824	+	599	187932197	-	FTM_1586	-	ABC-type anion transport system, duplicated permease component
1286	 37.13	+1	1698843..1700159	+	438	187932198	-	FTM_1587	-	ABC transporter, ATP-binding protein
1287	 32.43	0	1701872..1703758	+	628	187932199	-	FTM_1589	-	monovalent cation:proton antiporter
1288	 36.85	+1	1703743..1704282	+	179	187932200	paaY	FTM_1590	-	carbonic anhydrase/acetyltransferase, isoleucine patch superfamily
1289	 31.47	0	1704233..1704877	+	214	187932201	lolB	FTM_1591	-	outer membrane lipoprotein LolB
1290	 31.16	0	1704865..1705692	+	275	187932202	ispE	FTM_1592	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1291	 30.23	0	1707223..1707738	-	171	187932203	-	FTM_1596	-	cytochrome b561 family protein
1292	 35.74	0	1707819..1708814	-	331	187932204	-	FTM_1597	-	inorganic phosphate transporter (PiT) family protein
1293	 30.44	0	1708832..1709488	-	218	187932205	-	FTM_1598	-	hypothetical protein
1294	 33.85	0	1709725..1711269	+	514	187932206	-	FTM_1599	-	acid phosphatase
1295	 35.24	0	1715402..1716238	-	278	187932207	uspA	FTM_1604	-	universal stress protein
1296	 31.47	0	1716314..1719055	-	913	187932208	-	FTM_1605	-	DNA/RNA helicase
1297	 33.33	0	1719039..1719818	-	259	187932209	-	FTM_1606	-	hypothetical protein
1298	 34.57	0	1719891..1720454	-	187	187932210	-	FTM_1607	-	predicted hydrolase of the HAD superfamily
1299	 33.79	0	1721277..1722149	-	290	187932211	-	FTM_1609	-	SAM-dependent methyltransferase
1300	 34.00	0	1722142..1723497	-	451	187932212	murC	FTM_1610	-	UDP-N-acetylmuramate-alanine ligase
1301	 35.14	0	1723564..1724337	-	257	187932213	-	FTM_1611	-	shikimate 5-dehydrogenase
1302	 39.22	+1	1724464..1724922	+	152	187932214	-	FTM_1612	-	hypothetical protein
1303	 36.30	+1	1725014..1725148	+	44	187932215	rpmH	FTM_1613	-	50S ribosomal protein L34
1304	 31.36	0	1725138..1725491	+	117	187932216	rnpA	FTM_1614	-	ribonuclease P protein component
1305	 34.14	0	1725467..1725715	+	82	187932217	-	FTM_1615	-	hypothetical protein
1306	 33.94	0	1725724..1727379	+	551	187932218	-	FTM_1616	-	hypothetical membrane protein
1307	 33.00	0	1727386..1728285	+	299	187932219	-	FTM_1617	-	LPS fatty acid acyltransferase
1308	 33.33	0	1728346..1729269	+	307	187932220	-	FTM_1618	-	LPS fatty acid acyltransferase
1309	 36.52	+1	1729281..1729688	+	135	187932221	pilE	FTM_1619	-	Type IV pili, pilus assembly protein
1310	 34.56	0	1729728..1730297	+	189	187932222	efp	FTM_1620	-	translation elongation factor P
1311	 33.89	0	1730300..1730836	+	178	187932223	orn	FTM_1621	-	oligoribonuclease (3'->5' exoribonuclease)
1312	 37.21	+1	1734512..1737145	-	877	187932224	ppdK	FTM_1625	-	phosphoenolpyruvate synthase/pyruvate phosphate dikinase
1313	 33.29	0	1737972..1740215	-	747	187932225	feoB	FTM_1626	-	ferrous iron transport protein B
1314	 32.17	0	1741641..1743794	-	717	187932226	priA	FTM_1628	-	primosomal protein N'
1315	 30.56	0	1743791..1744366	-	191	187932227	-	FTM_1629	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
1316	 29.29	-1	1744385..1745572	-	395	187932228	rbn	FTM_1630	-	tRNA processing ribonuclease BN
1317	 39.70	+2	1745579..1746175	+	198	187932229	wrbA	FTM_1631	-	trp repressor binding protein
1318	 38.49	+1	1746186..1746650	+	154	187932230	-	FTM_1632	-	outer membrane lipoprotein
1319	 32.35	0	1746771..1747994	+	407	187932231	-	FTM_1633	-	major facilitator superfamily (MFS) transport protein
1320	 34.53	0	1748069..1748986	+	305	187932232	-	FTM_1634	-	manganese/Zinc/Iron chelate uptake transporter family protein
1321	 32.30	0	1748987..1749664	+	225	187932233	-	FTM_1635	-	ATP-binding cassette (ABC) superfamily protein
1322	 33.10	0	1749606..1750448	+	280	187932234	-	FTM_1636	-	manganese/zinc/iron chelate uptake transporter (MZT) family protein
1323	 32.21	0	1751270..1751803	-	177	187932235	hpt	FTM_1638	-	hypoxanthine-guanine phosphoribosyltransferase
1324	 35.35	0	1751807..1753093	-	428	187932236	purA	FTM_1639	-	adenylosuccinate synthetase
1325	 36.69	+1	1753270..1754817	+	515	187932237	purH	FTM_1640	-	AICAR transformylase/IMP cyclohydrolase
1326	 32.56	0	1758946..1759464	-	172	187932238	blc	FTM_1643	-	outer membrane lipoprotein blc
1327	 30.78	0	1759550..1760527	+	325	187932239	holA	FTM_1644	-	DNA polymerase III, delta subunit
1328	 38.15	+1	1760647..1761684	+	345	187932240	glnA	FTM_1645	-	glutamine synthetase, catalytic domain
1329	 30.94	0	1764285..1764827	+	180	187932241	-	FTM_1648	-	hypothetical protein
1330	 35.47	0	1765212..1766942	-	576	187932242	lysU	FTM_1649	-	lysyl-tRNA synthetase
1331	 38.75	+1	1767075..1768052	-	325	187932243	prfB	FTM_1650	-	peptide chain release factor 2
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.