IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1200	 29.29	-1	1614656..1615447	-	263	187932112	wbtC	FTM_1496	-	UDP-glucose 4-epimerase
1201	 32.23	0	1615449..1616081	-	210	187932113	wbtB	FTM_1497	-	galactosyl transferase
1202	 33.22	0	1616074..1617810	-	578	187932114	wbtA	FTM_1498	-	dTDP-glucose 4,6-dehydratase
1203	 38.00	+1	1618968..1620317	+	449	187932115	gdhA	FTM_1499	-	glutamate dehydrogenase
1204	 25.98	-2	1622357..1623322	-	321	187932116	-	FTM_1500	-	hypothetical protein
1205	 35.62	0	1625146..1625583	-	145	187932117	rplQ	FTM_1501	-	50S ribosomal protein L17
1206	 33.02	0	1625628..1626599	-	323	187932118	rpoA	FTM_1502	-	DNA-directed RNA polymerase, alpha subunit
1207	 36.55	+1	1626657..1627277	-	206	187932119	rpsD	FTM_1503	-	30S ribosomal protein S4
1208	 38.72	+1	1627299..1627688	-	129	187932120	rpsK	FTM_1504	-	30S ribosomal protein S11
1209	 37.82	+1	1627727..1628083	-	118	187932121	rpsM	FTM_1505	-	30S ribosomal protein S13
1210	 35.96	0	1628200..1628313	-	37	187932122	rpmJ	FTM_1506	-	50S ribosomal protein L36
1211	 34.01	0	1628337..1629662	-	441	187932123	secY	FTM_1507	-	preprotein translocase, subunit Y, membrane protein
1212	 37.50	+1	1629673..1630104	-	143	187932124	rplO	FTM_1508	-	50S ribosomal protein L15
1213	 34.95	0	1630111..1630296	-	61	187932125	rpmD	FTM_1509	-	50S ribosomal protein L30
1214	 38.72	+1	1630303..1630803	-	166	187932126	rpsE	FTM_1510	-	30S ribosomal protein S5
1215	 36.44	+1	1630831..1631184	-	117	187932127	rplR	FTM_1511	-	50S ribosomal protein L18
1216	 38.18	+1	1631207..1631743	-	178	187932128	rplF	FTM_1512	-	50S ribosomal protein L6
1217	 36.09	0	1631762..1632160	-	132	187932129	rpsH	FTM_1513	-	30S ribosomal protein S8
1218	 34.31	0	1632177..1632482	-	101	187932130	rpsN	FTM_1514	-	30S ribosomal protein S14
1219	 33.15	0	1632501..1633040	-	179	187932131	rplE	FTM_1515	-	50S ribosomal protein L5
1220	 36.79	+1	1633052..1633369	-	105	187932132	rplX	FTM_1516	-	50S ribosomal protein L24
1221	 39.84	+2	1633391..1633759	-	122	187932133	rplN	FTM_1517	-	50S ribosomal protein L14
1222	 30.56	0	1633850..1634101	-	83	187932134	rpsQ	FTM_1518	-	30S ribosomal protein S17
1223	 29.85	0	1634114..1634314	-	66	187932135	rpmC	FTM_1519	-	50S ribosomal protein L29
1224	 42.51	+2	1634314..1634727	-	137	187932136	rplP	FTM_1520	-	50S ribosomal protein L16
1225	 37.80	+1	1634727..1635398	-	223	187932137	rpsC	FTM_1521	-	30S ribosomal protein S3
1226	 36.61	+1	1635413..1635748	-	111	187932138	rplV	FTM_1522	-	50S ribosomal protein L22
1227	 36.56	+1	1635764..1636042	-	92	187932139	rpsS	FTM_1523	-	30S ribosomal protein S19
1228	 39.52	+1	1636057..1636881	-	274	187932140	rplB	FTM_1524	-	50S ribosomal protein L2
1229	 35.67	0	1636903..1637202	-	99	187932141	rplW	FTM_1525	-	50S ribosomal protein L23
1230	 37.66	+1	1637199..1637822	-	207	187932142	rplD	FTM_1526	-	50S ribosomal protein L4
1231	 39.49	+1	1637855..1638487	-	210	187932143	rplC	FTM_1527	-	50S ribosomal protein L3
1232	 33.33	0	1638591..1638908	-	105	187932144	rpsJ	FTM_1528	-	30S ribosomal protein S10
1233	 40.57	+2	1638929..1641043	-	704	187932145	fusA	FTM_1529	-	translation elongation factor G
1234	 39.24	+1	1641058..1641531	-	157	187932146	rpsG	FTM_1530	-	30S ribosomal protein S7
1235	 42.93	+2	1641570..1641944	-	124	187932147	rpsL	FTM_1531	-	30S ribosomal protein S12
1236	 34.84	0	1642079..1642675	-	198	187932148	pgsA	FTM_1532	-	phosphatidylglycerophosphate synthetase
1237	 37.36	+1	1642679..1643125	-	148	187932149	dut	FTM_1533	-	dUTP pyrophosphatase (Deoxyuridine 5'- triphosphate nucleotidohydrolase
1238	 33.08	0	1643135..1643929	-	264	187932150	cdsA	FTM_1534	-	phosphatidate cytidylyltransferase
1239	 35.55	0	1643943..1644665	-	240	187932151	uppS	FTM_1535	-	undecaprenyl diphosphate synthase
1240	 34.95	0	1644749..1645306	-	185	187932152	frr	FTM_1536	-	ribosome recycling factor
1241	 37.07	+1	1645335..1646084	-	249	187932153	pyrH	FTM_1537	-	uridylate kinase
1242	 38.85	+1	1646088..1646957	-	289	187932154	tsf	FTM_1538	-	translation elongation factor EF-Ts
1243	 35.42	0	1646979..1647698	-	239	187932155	rpsB	FTM_1539	-	30S ribosomal protein S2
1244	 27.62	-1	1647890..1648432	+	180	187932156	folA	FTM_1540	-	dihydrofolate reductase
1245	 33.98	0	1648514..1649437	+	307	187932157	-	FTM_1541	-	hypothetical protein
1246	 30.34	0	1652284..1653252	-	322	187932158	-	FTM_1544	-	hypothetical protein
1247	 35.54	0	1653252..1654658	-	468	187932159	gltX	FTM_1545	-	glutamyl-tRNA synthetase
1248	 35.78	0	1654788..1656179	-	463	187932160	fumC	FTM_1546	-	fumarate hydratase, class II
1249	 32.87	0	1656868..1657521	+	217	187932161	nfnB	FTM_1548	-	dihydropteridine reductase
1250	 36.61	+1	1657548..1658705	+	385	187932162	-	FTM_1549	-	L-lactate dehydrogenase
1251	 27.98	-1	1658702..1659037	-	111	187932163	-	FTM_1550	-	hypothetical membrane protein
1252	 28.23	-1	1659221..1661023	-	600	187932164	-	FTM_1551	-	hypothetical protein
1253	 36.67	+1	1661052..1663811	-	919	187932165	valS	FTM_1552	-	valyl-tRNA synthetase
1254	 31.75	0	1663943..1664383	-	146	187932166	holC	FTM_1553	-	DNA polymerase III, chi subunit
1255	 28.57	-1	1664414..1664896	-	160	187932167	-	FTM_1554	-	hypothetical membrane protein
1256	 35.28	0	1664904..1665572	-	222	187932168	pcp	FTM_1555	-	pyrrolidone carboxylylate peptidase
1257	 32.10	0	1665579..1667204	-	541	187932169	-	FTM_1556	-	hypothetical protein
1258	 29.26	-1	1667194..1668027	-	277	187932170	-	FTM_1557	-	protein of unknown function with TPR repeat region and von Willebrand factor type A domain
1259	 36.54	+1	1668018..1669016	-	332	187932171	-	FTM_1558	-	hypothetical membrane protein with von Willebrand factor type A domain
1260	 34.23	0	1669018..1670019	-	333	187932172	-	FTM_1559	-	protein of unknown function containing a von Willebrand factor type A (vWA) domain
1261	 32.29	0	1670016..1670492	-	158	187932173	-	FTM_1560	-	hypothetical protein
1262	 32.57	0	1670482..1671393	-	303	187932174	-	FTM_1561	-	hypothetical protein
1263	 37.62	+1	1671406..1672362	-	318	187932175	-	FTM_1562	-	MoxR-like ATPase
1264	 30.80	0	1672508..1672942	+	144	187932176	-	FTM_1563	-	lipoprotein, putative
1265	 34.27	0	1672949..1673800	+	283	187932177	pdxY	FTM_1564	-	pyridoxal kinase
1266	 31.03	0	1673800..1674495	+	231	187932178	-	FTM_1565	-	hypothetical protein
1267	 35.73	0	1674570..1675613	+	347	187932179	lpxD2	FTM_1566	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1268	 30.51	0	1675758..1676606	-	282	187932180	cyoE	FTM_1567	-	heme O synthase
1269	 35.44	0	1676637..1676969	-	110	187932181	cyoD	FTM_1568	-	cytochrome bo terminal oxidase subunit IV
1270	 34.16	0	1676971..1677573	-	200	187932182	cyoC	FTM_1569	-	cytochrome bo terminal oxidase subunit III
1271	 37.52	+1	1677570..1679600	-	676	187932183	cyoB	FTM_1570	-	cytochrome bo terminal oxidase subunit I
1272	 35.77	0	1679639..1680541	-	300	187932184	cyoA	FTM_1571	-	cytochrome bo terminal oxidase subunit II
1273	 33.11	0	1680901..1682268	+	455	187932185	-	FTM_1572	-	major facilitator superfamily (MFS) transport protein
1274	 37.04	+1	1682722..1684476	+	584	187932186	cydA	FTM_1573	-	cytochrome bd-I terminal oxidase subunit I
1275	 35.68	0	1684487..1685680	+	397	187932187	cydB	FTM_1574	-	cytochrome bd-I terminal oxidase subunit II
1276	 28.76	-1	1685913..1686611	+	232	187932188	-	FTM_1575	-	polar amino acid uptake transporter
1277	 28.17	-1	1690304..1691272	-	322	187932189	-	FTM_1578	-	hypothetical protein
1278	 33.06	0	1691462..1693318	+	618	187932190	-	FTM_1579	-	ribonuclease II family protein
1279	 33.49	0	1693664..1694317	+	217	187932191	-	FTM_1580	-	acarboxylesterase/phospholipase family protein
1280	 34.55	0	1694314..1695216	+	300	187932192	hemC	FTM_1581	-	hydroxymethylbilane synthase (porphobilinogen deaminase)
1281	 32.06	0	1695217..1695609	+	130	187932193	crcB	FTM_1582	-	CrcB family protein
1282	 32.60	0	1695606..1696013	+	135	187932194	-	FTM_1583	-	hypothetical membrane protein
1283	 36.84	+1	1696156..1696725	+	189	187932195	-	FTM_1584	-	hypothetical membrane protein
1284	 32.76	0	1696722..1696895	-	57	187932196	-	FTM_1585	-	hypothetical protein
1285	 34.11	0	1697025..1698824	+	599	187932197	-	FTM_1586	-	ABC-type anion transport system, duplicated permease component
1286	 37.13	+1	1698843..1700159	+	438	187932198	-	FTM_1587	-	ABC transporter, ATP-binding protein
1287	 32.43	0	1701872..1703758	+	628	187932199	-	FTM_1589	-	monovalent cation:proton antiporter
1288	 36.85	+1	1703743..1704282	+	179	187932200	paaY	FTM_1590	-	carbonic anhydrase/acetyltransferase, isoleucine patch superfamily
1289	 31.47	0	1704233..1704877	+	214	187932201	lolB	FTM_1591	-	outer membrane lipoprotein LolB
1290	 31.16	0	1704865..1705692	+	275	187932202	ispE	FTM_1592	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1291	 30.23	0	1707223..1707738	-	171	187932203	-	FTM_1596	-	cytochrome b561 family protein
1292	 35.74	0	1707819..1708814	-	331	187932204	-	FTM_1597	-	inorganic phosphate transporter (PiT) family protein
1293	 30.44	0	1708832..1709488	-	218	187932205	-	FTM_1598	-	hypothetical protein
1294	 33.85	0	1709725..1711269	+	514	187932206	-	FTM_1599	-	acid phosphatase
1295	 35.24	0	1715402..1716238	-	278	187932207	uspA	FTM_1604	-	universal stress protein
1296	 31.47	0	1716314..1719055	-	913	187932208	-	FTM_1605	-	DNA/RNA helicase
1297	 33.33	0	1719039..1719818	-	259	187932209	-	FTM_1606	-	hypothetical protein
1298	 34.57	0	1719891..1720454	-	187	187932210	-	FTM_1607	-	predicted hydrolase of the HAD superfamily
1299	 33.79	0	1721277..1722149	-	290	187932211	-	FTM_1609	-	SAM-dependent methyltransferase
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.