IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.84   STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
69	 34.12	0	94855..96384	-	509	187930982	-	FTM_0088	-	hypothetical membrane protein
70	 33.92	0	96470..97660	-	396	187930983	-	FTM_0089	-	drug:H+ antiporter-1
71	 32.70	0	97676..98929	-	417	187930984	-	FTM_0090	-	diaminopimelate decarboxylase
72	 31.04	0	98922..100184	-	420	187930985	-	FTM_0091	-	drug:H+ antiporter-1
73	 32.55	0	100191..102110	-	639	187930986	frgA	FTM_0092	-	siderophore biosynthesis protein
74	 32.86	0	102363..102785	-	140	187930987	fur	FTM_0093	-	ferric uptake regulation protein
75	 36.34	+1	102993..103391	+	132	187930988	nuoA	FTM_0094	-	NADH dehydrogenase I, A subunit
76	 43.61	+2	103382..103858	+	158	187930989	nuoB	FTM_0095	-	NADH dehydrogenase I, B subunit
77	 36.28	+1	103861..104505	+	214	187930990	nuoC	FTM_0096	-	NADH dehydrogenase I, C subunit
78	 38.92	+1	104527..105780	+	417	187930991	nuoD	FTM_0097	-	NADH dehydrogenase I, D subunit
79	 35.99	0	105790..106278	+	162	187930992	nuoE	FTM_0098	-	NADH dehydrogenase I, E subunit
80	 40.39	+2	106285..107559	+	424	187930993	nuoF	FTM_0099	-	NADH dehydrogenase I, F subunit
81	 36.46	+1	107577..109943	+	788	187930994	nuoG	FTM_0100	-	NADH dehydrogenase I, G subunit
82	 36.50	+1	109945..110955	+	336	187930995	nuoH	FTM_0101	-	NADH dehydrogenase I, H subunit
83	 35.17	0	110969..111457	+	162	187930996	nuoI	FTM_0102	-	NADH dehydrogenase I, I subunit
84	 34.98	0	111462..112067	+	201	187930997	nuoJ	FTM_0103	-	NADH dehydrogenase I, J subunit
85	 32.08	0	112060..112377	+	105	187930998	nuoK	FTM_0104	-	NADH dehydrogenase I, K subunit
86	 35.02	0	112387..114396	+	669	187930999	nuoL	FTM_0105	-	NADH dehydrogenase I, L subunit
87	 36.29	+1	114422..116011	+	529	187931000	nuoM	FTM_0106	-	NADH dehydrogenase I, M subunit
88	 35.40	0	116027..117478	+	483	187931001	nuoN	FTM_0107	-	NADH dehydrogenase I, N subunit
89	 30.77	0	117554..117748	+	64	187931002	-	FTM_0108	-	hypothetical protein
90	 35.75	0	119311..120345	+	344	187931003	hemE	FTM_0110	-	uroporphyrinogen decarboxylase
91	 35.32	0	120571..121023	+	150	187931004	-	FTM_0112	-	protein Lpl2691
92	 34.49	0	121041..122510	+	489	187931005	nusA	FTM_0113	-	transcription termination factor NusA
93	 38.13	+1	122549..125089	+	846	187931006	infB	FTM_0114	-	translation initiation factor IF-2
94	 32.41	0	125092..125523	+	143	187931007	rbfA	FTM_0115	-	ribosome-binding factor A
95	 34.76	0	125531..126796	+	421	187931008	hisS	FTM_0116	-	histidyl-tRNA synthetase
96	 33.95	0	126803..128101	+	432	187931009	-	FTM_0117	-	major facilitator superfamily
97	 29.59	0	128104..129171	+	355	187931010	-	FTM_0118	-	ATPase
98	 33.98	0	129164..130093	+	309	187931011	rluC	FTM_0119	-	ribosomal large subunit pseudouridine synthase C
99	 35.25	0	130095..131399	-	434	187931012	-	FTM_0120	-	major facilitator superfamily
100	 27.08	-1	131476..131907	+	143	187931013	-	FTM_0121	-	hypothetical membrane protein
101	 36.99	+1	131960..132751	+	263	187931014	atpB	FTM_0122	-	ATP synthase, F0 sector, subunit a
102	 41.18	+2	132802..133107	+	101	187931015	atpE	FTM_0123	-	ATP synthase, F0 sector, subunit c
103	 37.79	+1	133153..133623	+	156	187931016	atpF	FTM_0124	-	ATP synthase, F0 sector, subunit b
104	 32.57	0	133643..134167	+	174	187931017	atpH	FTM_0125	-	ATP synthase, F1 sector, subunit delta
105	 38.46	+1	134186..135727	+	513	187931018	atpA	FTM_0126	-	ATP synthase, F1 sector, subunit alpha
106	 35.12	0	135742..136638	+	298	187931019	atpG	FTM_0127	-	ATP synthase, F1 sector, subunit gamma
107	 38.71	+1	136648..138024	+	458	187931020	atpD	FTM_0128	-	ATP synthase, F1 sector, subunit beta
108	 37.90	+1	138037..138474	+	145	187931021	atpC	FTM_0129	-	ATP synthase, F1 sector, subunit epsilon
109	 32.10	0	138685..141528	+	947	187931022	-	FTM_0130	-	hypothetical protein
110	 35.15	0	141545..141874	-	109	187931023	-	FTM_0131	-	glutaredoxin-related protein
111	 33.85	0	142010..142588	+	192	187931024	sodB	FTM_0132	-	iron/manganese superoxide dismutase family protein
112	 28.57	-1	142600..142788	+	62	187931025	-	FTM_0133	-	hypothetical protein
113	 32.94	0	142793..144058	-	421	187931026	ampG	FTM_0134	-	peptide-acetyl-coenzyme A transporter (PAT) family protein
114	 36.35	+1	144148..145407	-	419	187931027	gltA	FTM_0135	-	citrate synthase I
115	 35.02	0	145665..146138	+	157	187931028	sdhC	FTM_0136	-	succinate dehydrogenase, cytochrome b556 subunit
116	 34.96	0	146114..146482	+	122	187931029	sdhD	FTM_0137	-	succinate dehydrogenase, hydrophobic membrane anchor protein
117	 40.13	+2	146495..148288	+	597	187931030	sdhA	FTM_0138	-	succinate dehydrogenase, flavoprotein subunit
118	 36.32	+1	148306..149007	+	233	187931031	sdhB	FTM_0139	-	succinate dehydrogenase iron-sulfur protein
119	 36.21	0	149037..151850	+	937	187931032	sucA	FTM_0140	-	2-oxoglutarate dehydrogenase, E1 component
120	 37.89	+1	151876..153345	+	489	187931033	sucB	FTM_0141	-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
121	 39.02	+1	153385..153912	+	175	187931034	apt	FTM_0142	-	adenine phosphoribosyltransferase
122	 34.76	0	153923..155254	+	443	187931035	mrsA	FTM_0143	-	phosphoglucosamine mutase
123	 34.25	0	155257..156018	+	253	187931036	tpiA	FTM_0144	-	triosephosphate isomerase
124	 38.98	+1	156006..156359	+	117	187931037	secG	FTM_0145	-	preprotein translocase, subunit G, membrane protein
125	 30.53	0	158036..159178	-	380	187931038	hemN	FTM_0149	-	coproporphyrinogen III oxidase, anaerobic
126	 27.25	-1	159183..159560	-	125	187931039	-	FTM_0150	-	GtrA-like protein
127	 31.40	0	159630..160508	+	292	187931040	-	FTM_0151	-	iron-dependent peroxidase
128	 37.31	+1	160613..163426	+	937	187931041	acnA	FTM_0152	-	aconitate hydratase 1
129	 25.06	-2	166432..166878	-	148	187931042	-	FTM_0155	-	hypothetical protein
130	 32.43	0	169467..170348	+	293	187931043	-	FTM_0158	-	NAD dependent epimerase/dehydratase family
131	 31.65	0	170345..171772	-	475	187931044	-	FTM_0159	-	two-component regulator, sensor histidine kinase
132	 31.23	0	174285..174806	+	173	187931045	-	FTM_0162	-	hypothetical protein
133	 27.42	-1	177103..178116	+	337	187931046	-	FTM_0164	-	peptidase, U61 family
134	 27.66	-1	179561..180142	-	193	187931047	-	FTM_0165	-	transposase, IS4 family protein
135	 34.58	0	180384..181664	-	426	187931048	-	FTM_0166	-	major facilitator superfamily
136	 35.87	0	181784..184897	-	1037	187931049	-	FTM_0167	-	transporter, AcrB/AcrD/AcrF family
137	 33.62	0	184897..186270	-	457	187931050	-	FTM_0168	-	membrane fusion protein
138	 29.07	-1	186283..186774	-	163	187931051	dsbB	FTM_0169	-	disulfide bond formation protein
139	 32.59	0	186814..187896	-	360	187931052	cca	FTM_0170	-	CCA-adding enzyme
140	 34.54	0	188001..189830	+	609	187931053	msbA	FTM_0171	-	lipid A export permease/ATP-binding protein MsbA
141	 32.61	0	189836..190804	+	322	187931054	lpxK	FTM_0172	-	tetraacyldisaccharide 4'-kinase
142	 35.04	0	190900..193593	+	897	187931055	polA	FTM_0173	-	DNA polymerase I
143	 34.62	0	193613..194389	+	258	187931056	-	FTM_0174	-	type III pantothenate kinase 1
144	 36.79	+1	194394..195638	+	414	187931057	deoB	FTM_0175	-	phosphopentomutase
145	 33.60	0	195601..196362	+	253	187931058	deoC	FTM_0176	-	deoxyribose-phosphate aldolase
146	 30.58	0	196352..197551	+	399	187931059	nupC1	FTM_0177	-	nucleoside permease NupC
147	 30.67	0	197570..198772	+	400	187931060	nupC	FTM_0178	-	nucleoside permease NupC
148	 32.22	0	198785..199414	+	209	187931061	tmk	FTM_0179	-	thymidylate kinase
149	 36.57	+1	199476..201053	+	525	187931062	prfC	FTM_0180	-	peptide chain release factor 3
150	 33.64	0	201128..202447	+	439	187931063	fimV	FTM_0181	-	type IV pili, pilus assembly protein
151	 35.14	0	202480..203475	+	331	187931064	ftsY	FTM_0182	-	signal recognition particle-docking protein FtsY
152	 33.47	0	203566..205788	+	740	187931065	uvrD	FTM_0183	-	DNA helicase II
153	 34.54	0	205907..207475	+	522	187931066	-	FTM_0184	-	ABC-type oligopeptide transport system, periplasmic component
154	 35.81	0	209380..210348	+	322	187931067	oppD	FTM_0187	-	peptide/opine/nickel uptake transporter (PepT) family protein
155	 30.92	0	211326..212528	-	400	187931068	-	FTM_0189	-	major facilitator superfamily
156	 33.85	0	212662..213243	+	193	187931069	-	FTM_0190	-	hypothetical protein
157	 31.81	0	213342..214655	+	437	187931070	-	FTM_0191	-	sugar transporter, MFS superfamily
158	 38.04	+1	214712..216220	+	502	187931071	glpK	FTM_0192	-	glycerol kinase
159	 33.99	0	217283..218815	+	510	187931072	glpD	FTM_0193	-	glycerol-3-phosphate dehydrogenase
160	 38.69	+1	218825..219589	+	254	187931073	glpF	FTM_0194	-	glycerol uptake facilitator protein
161	 27.73	-1	219593..220306	+	237	187931074	-	FTM_0195	-	hypothetical membrane protein
162	 34.54	0	220284..220781	+	165	187931075	-	FTM_0196	-	small conductance mechanosensitive ion channel (MscS) family protein
163	 42.03	+2	222659..223843	+	394	187931076	tufA	FTM_0201	-	translation elongation factor Tu
164	 34.18	0	224036..224506	+	156	187931077	secE	FTM_0203	-	preprotein translocase, subunit E, membrane protein
165	 38.76	+1	224522..225055	+	177	187931078	nusG	FTM_0204	-	transcription termination/antitermination factor NusG
166	 38.16	+1	225125..225559	+	144	187931079	rplK	FTM_0205	-	50S ribosomal protein L11
167	 37.93	+1	225562..226257	+	231	187931080	rplA	FTM_0206	-	50S ribosomal protein L1
168	 39.31	+1	226427..226945	+	172	187931081	rplJ	FTM_0207	-	50S ribosomal protein L10
32.84	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.