IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1113	 34.08	0	1501016..1501816	+	266	187932025	-	FTM_1395	-	hypothetical protein
1114	 32.42	0	1501850..1502833	+	327	187932026	-	FTM_1396	-	tRNA-dihydrouridine synthase
1115	 32.55	0	1502840..1503607	-	255	187932027	-	FTM_1397	-	protein-disulfide isomerase
1116	 31.82	0	1504597..1506510	-	637	187932028	-	FTM_1399	-	outer membrane protein of unknown function
1117	 37.97	+1	1506680..1507843	+	387	187932029	sucC	FTM_1400	-	succinyl-CoA synthetase beta chain
1118	 40.09	+2	1507875..1508747	+	290	187932030	sucD	FTM_1401	-	succinyl-CoA ligase [ADP-forming] subunit alpha
1119	 37.32	+1	1508859..1509284	+	141	187932031	-	FTM_1402	-	hypothetical membrane protein
1120	 29.49	0	1509667..1510707	+	346	187932032	-	FTM_1403	-	hypothetical protein
1121	 30.54	0	1510839..1512056	-	405	187932033	-	FTM_1404	-	hypothetical protein
1122	 33.20	0	1512286..1513731	+	481	187932034	-	FTM_1405	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1123	 36.05	0	1513735..1514655	+	306	187932035	-	FTM_1406	-	asparaginase
1124	 33.93	0	1515432..1515935	-	167	187932036	-	FTM_1408	-	hypothetical protein
1125	 33.47	0	1516268..1516990	+	240	187932037	cutC	FTM_1409	-	copper homeostasis protein CutC family protein
1126	 34.82	0	1517033..1518172	-	379	187932038	araJ	FTM_1410	-	conserved inner membrane protein of unknown function
1127	 31.56	0	1519246..1519920	+	224	187932039	gph	FTM_1412	-	phosphoglycolate phosphatase
1128	 36.91	+1	1521271..1522221	+	316	187932040	trxB	FTM_1414	-	thioredoxin reductase
1129	 26.31	-1	1522329..1523495	+	388	187932041	-	FTM_1415	-	major facilitator superfamily (MFS) transport protein
1130	 34.50	0	1524593..1526395	-	600	187932042	mutL	FTM_1417	-	DNA mismatch repair enzyme with ATPase activity
1131	 33.48	0	1526403..1527065	-	220	187932043	-	FTM_1418	-	hypothetical protein
1132	 38.19	+1	1527133..1527852	-	239	187932044	-	FTM_1419	-	hypothetical protein
1133	 32.32	0	1528006..1528893	+	295	187932045	-	FTM_1420	-	GTPase
1134	 40.07	+2	1529110..1529925	+	271	187932046	-	FTM_1421	-	lipoprotein, putative
1135	 30.20	0	1530178..1531359	-	393	187932047	potF	FTM_1422	-	ATP-binding cassette putrescine uptake system, periplasmic protein
1136	 33.48	0	1531443..1532852	+	469	187932048	-	FTM_1423	-	amino acid-polyamine-organocation (APC) superfamily protein
1137	 29.90	0	1532954..1534060	+	368	187932049	perM	FTM_1424	-	PerM family protein
1138	 33.05	0	1534054..1535796	+	580	187932050	recJ	FTM_1425	-	single-stranded-DNA-specific exonuclease RecJ
1139	 27.71	-1	1535793..1536575	+	260	187932051	-	FTM_1426	-	birA-like protein
1140	 30.95	0	1536572..1537495	+	307	187932052	-	FTM_1427	-	tRNA synthetase class II (D, K and N)
1141	 28.78	-1	1537500..1538618	-	372	187932053	-	FTM_1428	-	mechanosensitive ion channel protein
1142	 29.96	0	1538644..1539324	-	226	187932054	-	FTM_1429	-	hypothetical membrane protein
1143	 36.87	+1	1539418..1540773	-	451	187932055	accC	FTM_1430	-	acetyl-CoA carboxylase, biotin carboxylase subunit
1144	 37.55	+1	1540838..1541311	-	157	187932056	accB	FTM_1431	-	acetyl-CoA carboxylase, biotin carboxy carrier protein subunit
1145	 31.05	0	1541316..1541753	-	145	187932057	aroD	FTM_1432	-	3-dehydroquinate dehydratase
1146	 31.04	0	1541757..1542584	-	275	187932058	apaH	FTM_1433	-	diadenosine tetraphosphatase
1147	 31.05	0	1542596..1543384	-	262	187932059	ksgA	FTM_1434	-	dimethyladenosine transferase
1148	 32.41	0	1543386..1544795	-	469	187932060	-	FTM_1435	-	peptidyl-prolyl cis-trans isomerase (PPIase)
1149	 33.49	0	1544795..1547398	-	867	187932061	ostA1	FTM_1436	-	organic solvent tolerance protein
1150	 34.99	0	1547525..1549270	+	581	187932062	argS	FTM_1437	-	arginyl-tRNA synthetase
1151	 37.53	+1	1549311..1549691	-	126	187932063	-	FTM_1438	-	hypothetical protein
1152	 31.84	0	1551403..1551870	-	155	187932064	-	FTM_1440	-	RNA methyltransferase, SpoU family
1153	 36.92	+1	1551874..1552848	-	324	187932065	hemB	FTM_1441	-	delta-aminolevulinic acid dehydratase
1154	 33.69	0	1552856..1553134	-	92	187932066	yhbY	FTM_1442	-	RNA-binding protein
1155	 29.39	-1	1553145..1554056	-	303	187932067	holB	FTM_1443	-	DNA polymerase III, delta prime subunit
1156	 34.02	0	1554064..1555080	-	338	187932068	sohB	FTM_1444	-	peptidase family S49 protein
1157	 34.12	0	1555092..1555724	-	210	187932069	sspA	FTM_1445	-	stringent starvation protein A, regulator of transcription
1158	 34.92	0	1555805..1556119	+	104	187932070	-	FTM_1446	-	hypothetical protein
1159	 31.44	0	1556140..1556403	+	87	187932071	-	FTM_1447	-	hypothetical protein
1160	 31.18	0	1556495..1558258	+	587	187932072	-	FTM_1448	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
1161	 33.96	0	1558650..1559606	-	318	187932073	-	FTM_1449	-	glycosyltransferase
1162	 29.86	0	1559705..1560511	+	268	187932074	-	FTM_1450	-	hypothetical protein
1163	 34.00	0	1560519..1561724	-	401	187932075	ftsW	FTM_1451	-	cell division protein FtsW
1164	 29.50	0	1561734..1562984	-	416	187932076	murD	FTM_1452	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1165	 33.97	0	1562984..1564081	-	365	187932077	mraY	FTM_1453	-	phospho-N-acetylmuramoyl-pentapeptide- transferase
1166	 32.45	0	1564156..1565748	-	530	187932078	pckA	FTM_1454	-	phosphoenolpyruvate carboxykinase
1167	 34.18	0	1565893..1567539	+	548	187932079	glnS	FTM_1455	-	glutaminyl-tRNA synthetase
1168	 32.19	0	1570527..1572368	-	613	187932080	yjjK	FTM_1458	-	(putative) drug resistance ATPase-1 (Drug RA1) family protein
1169	 34.23	0	1572402..1573628	-	408	187932081	-	FTM_1459	-	drug:H+ antiporter-1 (DHA1) family protein
1170	 29.02	-1	1573711..1574754	-	347	187932082	-	FTM_1460	-	hypothetical protein
1171	 26.12	-1	1576220..1576801	+	193	187932083	-	FTM_1462	-	hypothetical protein
1172	 33.33	0	1577876..1578391	-	171	187932084	-	FTM_1464	-	acetyltransferase
1173	 29.57	0	1578396..1579112	-	238	187932085	-	FTM_1465	-	hypothetical protein
1174	 29.87	0	1579881..1580516	+	211	187932086	rhtB	FTM_1467	-	homoserine/threonine efflux family protein
1175	 34.34	0	1580513..1581403	-	296	187932087	ppnK	FTM_1468	-	NAD kinase
1176	 34.60	0	1581591..1582535	+	314	187932088	gtrB	FTM_1469	-	glycosyl transferase
1177	 32.44	0	1582539..1583318	-	259	187932089	-	FTM_1470	-	ATP-binding cassette (ABC) superfamily protein
1178	 32.68	0	1583327..1584250	-	307	187932090	-	FTM_1471	-	ATP-binding cassette (ABC) superfamily protein
1179	 34.11	0	1585213..1585989	-	258	187932091	-	FTM_1472	-	hypothetical protein
1180	 33.33	0	1586439..1587206	-	255	187932092	-	FTM_1473	-	Mg-dependent DNase
1181	 29.71	0	1588919..1589359	+	146	187932093	bfr	FTM_1475	-	bacterioferritin
1182	 32.81	0	1589977..1590933	-	318	187932094	-	FTM_1477	-	DNA-directed RNA polymerase, alpha subunit/40 kD subunit
1183	 34.84	0	1592487..1593413	-	308	187932095	ppx	FTM_1479	-	exopolyphosphatase
1184	 34.57	0	1593611..1593934	+	107	187932096	trxA1	FTM_1480	-	thioredoxin
1185	 39.75	+2	1593977..1595239	+	420	187932097	rho	FTM_1481	-	transcription termination factor Rho
1186	 35.42	0	1596356..1597840	-	494	187932098	manB	FTM_1482	-	phosphomannomutase
1187	 36.60	+1	1597871..1599277	-	468	187932099	manC	FTM_1483	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
1188	 33.62	0	1600425..1601474	-	349	187932100	wbtM	FTM_1484	-	dTDP-glucose 4,6-dehydratase
1189	 38.76	+1	1601992..1602876	-	294	187932101	wbtL	FTM_1485	-	glucose-1-phosphate thymidylyltransferase
1190	 29.04	-1	1602901..1603761	-	286	187932102	wbtK	FTM_1486	-	glycosyltransferase
1191	 30.44	0	1603754..1605241	-	495	187932103	wzx	FTM_1487	-	O-antigen flippase
1192	 28.65	-1	1605246..1605971	-	241	187932104	wbtJ	FTM_1488	-	formyltransferase
1193	 30.47	0	1605968..1607050	-	360	187932105	wbtI	FTM_1489	-	sugar transamine/perosamine synthetase
1194	 32.01	0	1607043..1608929	-	628	187932106	wbtH	FTM_1490	-	glutamine amidotransferase/asparagine synthase
1195	 26.43	-1	1608929..1610029	-	366	187932107	wbtG	FTM_1491	-	glycosyl transferase
1196	 22.36	-2	1610026..1611255	-	409	187932108	wzy	FTM_1492	-	membrane protein/O-antigen protein
1197	 33.64	0	1611276..1612247	-	323	187932109	wbtF	FTM_1493	-	NAD dependent epimerase
1198	 35.09	0	1612247..1613557	-	436	187932110	wbtE	FTM_1494	-	UDP-glucose/GDP-mannose dehydrogenase
1199	 28.85	-1	1613575..1614666	-	363	187932111	wbtD	FTM_1495	-	glycosyl transferase, group 1
1200	 29.29	-1	1614656..1615447	-	263	187932112	wbtC	FTM_1496	-	UDP-glucose 4-epimerase
1201	 32.23	0	1615449..1616081	-	210	187932113	wbtB	FTM_1497	-	galactosyl transferase
1202	 33.22	0	1616074..1617810	-	578	187932114	wbtA	FTM_1498	-	dTDP-glucose 4,6-dehydratase
1203	 38.00	+1	1618968..1620317	+	449	187932115	gdhA	FTM_1499	-	glutamate dehydrogenase
1204	 25.98	-2	1622357..1623322	-	321	187932116	-	FTM_1500	-	hypothetical protein
1205	 35.62	0	1625146..1625583	-	145	187932117	rplQ	FTM_1501	-	50S ribosomal protein L17
1206	 33.02	0	1625628..1626599	-	323	187932118	rpoA	FTM_1502	-	DNA-directed RNA polymerase, alpha subunit
1207	 36.55	+1	1626657..1627277	-	206	187932119	rpsD	FTM_1503	-	30S ribosomal protein S4
1208	 38.72	+1	1627299..1627688	-	129	187932120	rpsK	FTM_1504	-	30S ribosomal protein S11
1209	 37.82	+1	1627727..1628083	-	118	187932121	rpsM	FTM_1505	-	30S ribosomal protein S13
1210	 35.96	0	1628200..1628313	-	37	187932122	rpmJ	FTM_1506	-	50S ribosomal protein L36
1211	 34.01	0	1628337..1629662	-	441	187932123	secY	FTM_1507	-	preprotein translocase, subunit Y, membrane protein
1212	 37.50	+1	1629673..1630104	-	143	187932124	rplO	FTM_1508	-	50S ribosomal protein L15
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.