IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1072	 33.53	0	1445675..1446184	-	169	187931984	-	FTM_1348	-	hypothetical protein
1073	 33.28	0	1446561..1448342	+	593	187931985	cydD	FTM_1349	-	ABC-type transport ATP-binding protein CydD
1074	 32.73	0	1448339..1449988	+	549	187931986	cydC	FTM_1350	-	ABC-type transport ATP-binding protein CydC
1075	 33.01	0	1449990..1451240	-	416	187931987	dctA	FTM_1351	-	aerobic C4-dicarboxylate transport protein
1076	 34.65	0	1451379..1451759	-	126	187931988	-	FTM_1352	-	endoribonuclease L-PSP
1077	 30.29	0	1453577..1454695	-	372	187931989	-	FTM_1354	-	ABC transporter, membrane protein
1078	 31.22	0	1455621..1456424	-	267	187931990	-	FTM_1356	-	hypothetical protein
1079	 34.20	0	1456730..1457764	+	344	187931991	ugpQ	FTM_1357	-	glycerophosphoryl diester phosphodiesterase family protein
1080	 36.29	+1	1457871..1459187	+	438	187931992	glpT	FTM_1358	-	glycerol-3-phosphate transporter
1081	 38.19	+1	1463195..1465420	+	741	187931993	katG	FTM_1361	-	peroxidase/catalase
1082	 32.05	0	1465524..1466849	+	441	187931994	-	FTM_1362	-	dGTP triphosphohydrolase
1083	 31.29	0	1466833..1468053	-	406	187931995	-	FTM_1363	-	metabolite:H+ symporter (MHS) family protein
1084	 33.33	0	1468114..1468458	-	114	187931996	-	FTM_1364	-	hypothetical protein
1085	 36.67	+1	1469466..1470095	-	209	187931997	upp	FTM_1366	-	uracil phosphoribosyltransferase
1086	 36.34	+1	1470289..1472619	-	776	187931998	chiA	FTM_1367	-	chitinase, glycosyl hydrolase family 18
1087	 34.50	0	1473153..1474349	+	398	187931999	kbl	FTM_1368	-	2-amino-3-ketobutyrate coenzyme A ligase
1088	 37.50	+1	1474372..1475427	+	351	187932000	tdh	FTM_1369	-	L-threonine 3-dehydrogenase
1089	 27.55	-1	1475429..1476691	+	420	187932001	-	FTM_1370	-	serine permease
1090	 31.88	0	1476696..1477385	-	229	187932002	ispD	FTM_1371	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1091	 30.24	0	1477375..1477665	-	96	187932003	ftsB	FTM_1372	-	cell division protein, septum formation initiator
1092	 36.03	0	1477673..1479043	-	456	187932004	eno	FTM_1373	-	enolase (2-phosphoglycerate dehydratase)
1093	 31.96	0	1479152..1480390	-	412	187932005	-	FTM_1374	-	major facilitator superfamily (MFS) transport protein
1094	 27.19	-1	1480493..1481257	-	254	187932006	-	FTM_1375	-	nicotinamide mononucleotide transport (NMT) family protein
1095	 36.18	0	1481277..1482224	-	315	187932007	-	FTM_1376	-	ROK family protein
1096	 34.47	0	1482224..1483189	-	321	187932008	-	FTM_1377	-	ROK family protein
1097	 33.26	0	1483199..1484548	-	449	187932009	-	FTM_1378	-	RNA methyltransferase, trmA family
1098	 32.64	0	1484637..1485209	-	190	187932010	-	FTM_1379	-	hypothetical protein
1099	 31.96	0	1485474..1485692	-	72	187932011	rpoZ	FTM_1381	-	DNA-directed RNA polymerase, omega subunit
1100	 29.73	0	1485685..1486350	-	221	187932012	udk	FTM_1382	-	uridine kinase
1101	 36.59	+1	1486361..1487188	-	275	187932013	kdsA	FTM_1383	-	3-deoxy-D-manno-octulosonic acid 8-phosphate synthase
1102	 36.75	+1	1487219..1487569	-	116	187932014	-	FTM_1384	-	hypothetical protein
1103	 35.98	0	1487575..1489656	-	693	187932015	pnp	FTM_1385	-	polyribonucleotide nucleotidyltransferase
1104	 30.34	0	1489712..1489978	-	88	187932016	rpsO	FTM_1386	-	30S ribosomal protein S15
1105	 35.22	0	1490085..1491779	-	564	187932017	ftsI	FTM_1387	-	cell division protein, peptidoglycan synthetase (PBP)
1106	 29.06	-1	1491772..1492122	-	116	187932018	-	FTM_1388	-	hypothetical protein
1107	 33.44	0	1492119..1493036	-	305	187932019	mraW	FTM_1389	-	S-adenosyl-methyltransferase MraW
1108	 33.10	0	1493042..1495141	-	699	187932020	-	FTM_1390	-	hypothetical protein
1109	 29.70	0	1495235..1496059	+	274	187932021	mutM	FTM_1391	-	Formamidopyrimidine-DNA glycosylase
1110	 32.41	0	1496888..1497427	-	179	187932022	-	FTM_1392	-	glutamine amidotransferase, SNO family
1111	 39.00	+1	1497430..1498293	-	287	187932023	-	FTM_1393	-	pyridoxine/pyridoxal 5-phosphate biosynthesis protein
1112	 34.74	0	1498423..1500834	-	803	187932024	gyrB	FTM_1394	-	DNA gyrase, B subunit
1113	 34.08	0	1501016..1501816	+	266	187932025	-	FTM_1395	-	hypothetical protein
1114	 32.42	0	1501850..1502833	+	327	187932026	-	FTM_1396	-	tRNA-dihydrouridine synthase
1115	 32.55	0	1502840..1503607	-	255	187932027	-	FTM_1397	-	protein-disulfide isomerase
1116	 31.82	0	1504597..1506510	-	637	187932028	-	FTM_1399	-	outer membrane protein of unknown function
1117	 37.97	+1	1506680..1507843	+	387	187932029	sucC	FTM_1400	-	succinyl-CoA synthetase beta chain
1118	 40.09	+2	1507875..1508747	+	290	187932030	sucD	FTM_1401	-	succinyl-CoA ligase [ADP-forming] subunit alpha
1119	 37.32	+1	1508859..1509284	+	141	187932031	-	FTM_1402	-	hypothetical membrane protein
1120	 29.49	0	1509667..1510707	+	346	187932032	-	FTM_1403	-	hypothetical protein
1121	 30.54	0	1510839..1512056	-	405	187932033	-	FTM_1404	-	hypothetical protein
1122	 33.20	0	1512286..1513731	+	481	187932034	-	FTM_1405	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1123	 36.05	0	1513735..1514655	+	306	187932035	-	FTM_1406	-	asparaginase
1124	 33.93	0	1515432..1515935	-	167	187932036	-	FTM_1408	-	hypothetical protein
1125	 33.47	0	1516268..1516990	+	240	187932037	cutC	FTM_1409	-	copper homeostasis protein CutC family protein
1126	 34.82	0	1517033..1518172	-	379	187932038	araJ	FTM_1410	-	conserved inner membrane protein of unknown function
1127	 31.56	0	1519246..1519920	+	224	187932039	gph	FTM_1412	-	phosphoglycolate phosphatase
1128	 36.91	+1	1521271..1522221	+	316	187932040	trxB	FTM_1414	-	thioredoxin reductase
1129	 26.31	-1	1522329..1523495	+	388	187932041	-	FTM_1415	-	major facilitator superfamily (MFS) transport protein
1130	 34.50	0	1524593..1526395	-	600	187932042	mutL	FTM_1417	-	DNA mismatch repair enzyme with ATPase activity
1131	 33.48	0	1526403..1527065	-	220	187932043	-	FTM_1418	-	hypothetical protein
1132	 38.19	+1	1527133..1527852	-	239	187932044	-	FTM_1419	-	hypothetical protein
1133	 32.32	0	1528006..1528893	+	295	187932045	-	FTM_1420	-	GTPase
1134	 40.07	+2	1529110..1529925	+	271	187932046	-	FTM_1421	-	lipoprotein, putative
1135	 30.20	0	1530178..1531359	-	393	187932047	potF	FTM_1422	-	ATP-binding cassette putrescine uptake system, periplasmic protein
1136	 33.48	0	1531443..1532852	+	469	187932048	-	FTM_1423	-	amino acid-polyamine-organocation (APC) superfamily protein
1137	 29.90	0	1532954..1534060	+	368	187932049	perM	FTM_1424	-	PerM family protein
1138	 33.05	0	1534054..1535796	+	580	187932050	recJ	FTM_1425	-	single-stranded-DNA-specific exonuclease RecJ
1139	 27.71	-1	1535793..1536575	+	260	187932051	-	FTM_1426	-	birA-like protein
1140	 30.95	0	1536572..1537495	+	307	187932052	-	FTM_1427	-	tRNA synthetase class II (D, K and N)
1141	 28.78	-1	1537500..1538618	-	372	187932053	-	FTM_1428	-	mechanosensitive ion channel protein
1142	 29.96	0	1538644..1539324	-	226	187932054	-	FTM_1429	-	hypothetical membrane protein
1143	 36.87	+1	1539418..1540773	-	451	187932055	accC	FTM_1430	-	acetyl-CoA carboxylase, biotin carboxylase subunit
1144	 37.55	+1	1540838..1541311	-	157	187932056	accB	FTM_1431	-	acetyl-CoA carboxylase, biotin carboxy carrier protein subunit
1145	 31.05	0	1541316..1541753	-	145	187932057	aroD	FTM_1432	-	3-dehydroquinate dehydratase
1146	 31.04	0	1541757..1542584	-	275	187932058	apaH	FTM_1433	-	diadenosine tetraphosphatase
1147	 31.05	0	1542596..1543384	-	262	187932059	ksgA	FTM_1434	-	dimethyladenosine transferase
1148	 32.41	0	1543386..1544795	-	469	187932060	-	FTM_1435	-	peptidyl-prolyl cis-trans isomerase (PPIase)
1149	 33.49	0	1544795..1547398	-	867	187932061	ostA1	FTM_1436	-	organic solvent tolerance protein
1150	 34.99	0	1547525..1549270	+	581	187932062	argS	FTM_1437	-	arginyl-tRNA synthetase
1151	 37.53	+1	1549311..1549691	-	126	187932063	-	FTM_1438	-	hypothetical protein
1152	 31.84	0	1551403..1551870	-	155	187932064	-	FTM_1440	-	RNA methyltransferase, SpoU family
1153	 36.92	+1	1551874..1552848	-	324	187932065	hemB	FTM_1441	-	delta-aminolevulinic acid dehydratase
1154	 33.69	0	1552856..1553134	-	92	187932066	yhbY	FTM_1442	-	RNA-binding protein
1155	 29.39	-1	1553145..1554056	-	303	187932067	holB	FTM_1443	-	DNA polymerase III, delta prime subunit
1156	 34.02	0	1554064..1555080	-	338	187932068	sohB	FTM_1444	-	peptidase family S49 protein
1157	 34.12	0	1555092..1555724	-	210	187932069	sspA	FTM_1445	-	stringent starvation protein A, regulator of transcription
1158	 34.92	0	1555805..1556119	+	104	187932070	-	FTM_1446	-	hypothetical protein
1159	 31.44	0	1556140..1556403	+	87	187932071	-	FTM_1447	-	hypothetical protein
1160	 31.18	0	1556495..1558258	+	587	187932072	-	FTM_1448	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
1161	 33.96	0	1558650..1559606	-	318	187932073	-	FTM_1449	-	glycosyltransferase
1162	 29.86	0	1559705..1560511	+	268	187932074	-	FTM_1450	-	hypothetical protein
1163	 34.00	0	1560519..1561724	-	401	187932075	ftsW	FTM_1451	-	cell division protein FtsW
1164	 29.50	0	1561734..1562984	-	416	187932076	murD	FTM_1452	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1165	 33.97	0	1562984..1564081	-	365	187932077	mraY	FTM_1453	-	phospho-N-acetylmuramoyl-pentapeptide- transferase
1166	 32.45	0	1564156..1565748	-	530	187932078	pckA	FTM_1454	-	phosphoenolpyruvate carboxykinase
1167	 34.18	0	1565893..1567539	+	548	187932079	glnS	FTM_1455	-	glutaminyl-tRNA synthetase
1168	 32.19	0	1570527..1572368	-	613	187932080	yjjK	FTM_1458	-	(putative) drug resistance ATPase-1 (Drug RA1) family protein
1169	 34.23	0	1572402..1573628	-	408	187932081	-	FTM_1459	-	drug:H+ antiporter-1 (DHA1) family protein
1170	 29.02	-1	1573711..1574754	-	347	187932082	-	FTM_1460	-	hypothetical protein
1171	 26.12	-1	1576220..1576801	+	193	187932083	-	FTM_1462	-	hypothetical protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.