IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1043	 36.08	0	1407130..1407384	-	84	187931955	rpmA	FTM_1315	-	ribosomal protein L27
1044	 38.73	+1	1407415..1407729	-	104	187931956	rplU	FTM_1316	-	ribosomal protein L21
1045	 35.02	0	1409797..1412517	-	906	187931957	secA	FTM_1319	-	preprotein translocase, subunit A (ATPase, RNA helicase)
1046	 29.83	0	1412649..1413677	+	342	187931958	-	FTM_1320	-	hypothetical protein
1047	 28.00	-1	1413681..1414130	+	149	187931959	-	FTM_1321	-	hypothetical protein
1048	 33.20	0	1414127..1414849	-	240	187931960	deoD	FTM_1322	-	purine nucleoside phosphorylase
1049	 38.01	+1	1415910..1417856	-	648	187931961	hflB	FTM_1323	-	ATP-dependent metalloprotease
1050	 35.78	0	1419461..1422283	-	940	187931962	uvrA	FTM_1325	-	excinuclease ABC, A subunit
1051	 34.37	0	1422322..1422804	-	160	187931963	greA	FTM_1326	-	transcriptional elongation factor
1052	 35.73	0	1422838..1423422	-	194	187931964	fimT	FTM_1327	-	type IV pili, pilus assembly protein
1053	 32.78	0	1423423..1425045	-	540	187931965	pgi	FTM_1328	-	glucose-6-phosphate isomerase
1054	 28.13	-1	1425032..1425685	-	217	187931966	-	FTM_1329	-	predicted thiamine pyrophosphokinase
1055	 38.74	+1	1425751..1427211	-	486	187931967	guaB	FTM_1330	-	IMP dehydrogenase/GMP reductase
1056	 35.14	0	1427312..1428751	-	479	187931968	pepA	FTM_1331	-	cytosol aminopeptidase
1057	 29.36	-1	1428917..1429999	+	360	187931969	-	FTM_1332	-	hypothetical protein
1058	 31.45	0	1429999..1431060	+	353	187931970	-	FTM_1333	-	permease YjgP/YjgQ family protein
1059	 31.90	0	1431068..1432321	+	417	187931971	-	FTM_1334	-	metallopeptidase M16 family protein
1060	 31.13	0	1432328..1433551	+	407	187931972	-	FTM_1335	-	Zn-dependent peptidase M16 family protein
1061	 29.36	-1	1433552..1434130	+	192	187931973	-	FTM_1336	-	N6-adenine-specific methylase
1062	 32.41	0	1434164..1434814	+	216	187931974	-	FTM_1337	-	hypothetical protein
1063	 33.01	0	1434867..1435478	-	203	187931975	miaE	FTM_1338	-	tRNA-(ms(2)io(6)A)-hydroxylase
1064	 33.33	0	1435594..1436397	+	267	187931976	udp	FTM_1339	-	uridine phosphorylase
1065	 32.09	0	1436418..1436819	+	133	187931977	cdd	FTM_1340	-	cytidine deaminase
1066	 33.83	0	1437017..1440046	-	1009	187931978	-	FTM_1342	-	4Fe-4S ferredoxin, FAD dependent
1067	 34.76	0	1440264..1441802	+	512	187931979	gpmI	FTM_1343	-	phosphoglycerate mutase, cofactor independent
1068	 34.74	0	1441817..1443097	+	426	187931980	serS	FTM_1344	-	seryl-tRNA synthetase
1069	 36.11	0	1443207..1444106	+	299	187931981	cscK	FTM_1345	-	ROK family protein
1070	 30.32	0	1444184..1445443	+	419	187931982	-	FTM_1346	-	multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter
1071	 30.85	0	1445447..1445647	-	66	187931983	-	FTM_1347	-	hypothetical protein
1072	 33.53	0	1445675..1446184	-	169	187931984	-	FTM_1348	-	hypothetical protein
1073	 33.28	0	1446561..1448342	+	593	187931985	cydD	FTM_1349	-	ABC-type transport ATP-binding protein CydD
1074	 32.73	0	1448339..1449988	+	549	187931986	cydC	FTM_1350	-	ABC-type transport ATP-binding protein CydC
1075	 33.01	0	1449990..1451240	-	416	187931987	dctA	FTM_1351	-	aerobic C4-dicarboxylate transport protein
1076	 34.65	0	1451379..1451759	-	126	187931988	-	FTM_1352	-	endoribonuclease L-PSP
1077	 30.29	0	1453577..1454695	-	372	187931989	-	FTM_1354	-	ABC transporter, membrane protein
1078	 31.22	0	1455621..1456424	-	267	187931990	-	FTM_1356	-	hypothetical protein
1079	 34.20	0	1456730..1457764	+	344	187931991	ugpQ	FTM_1357	-	glycerophosphoryl diester phosphodiesterase family protein
1080	 36.29	+1	1457871..1459187	+	438	187931992	glpT	FTM_1358	-	glycerol-3-phosphate transporter
1081	 38.19	+1	1463195..1465420	+	741	187931993	katG	FTM_1361	-	peroxidase/catalase
1082	 32.05	0	1465524..1466849	+	441	187931994	-	FTM_1362	-	dGTP triphosphohydrolase
1083	 31.29	0	1466833..1468053	-	406	187931995	-	FTM_1363	-	metabolite:H+ symporter (MHS) family protein
1084	 33.33	0	1468114..1468458	-	114	187931996	-	FTM_1364	-	hypothetical protein
1085	 36.67	+1	1469466..1470095	-	209	187931997	upp	FTM_1366	-	uracil phosphoribosyltransferase
1086	 36.34	+1	1470289..1472619	-	776	187931998	chiA	FTM_1367	-	chitinase, glycosyl hydrolase family 18
1087	 34.50	0	1473153..1474349	+	398	187931999	kbl	FTM_1368	-	2-amino-3-ketobutyrate coenzyme A ligase
1088	 37.50	+1	1474372..1475427	+	351	187932000	tdh	FTM_1369	-	L-threonine 3-dehydrogenase
1089	 27.55	-1	1475429..1476691	+	420	187932001	-	FTM_1370	-	serine permease
1090	 31.88	0	1476696..1477385	-	229	187932002	ispD	FTM_1371	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1091	 30.24	0	1477375..1477665	-	96	187932003	ftsB	FTM_1372	-	cell division protein, septum formation initiator
1092	 36.03	0	1477673..1479043	-	456	187932004	eno	FTM_1373	-	enolase (2-phosphoglycerate dehydratase)
1093	 31.96	0	1479152..1480390	-	412	187932005	-	FTM_1374	-	major facilitator superfamily (MFS) transport protein
1094	 27.19	-1	1480493..1481257	-	254	187932006	-	FTM_1375	-	nicotinamide mononucleotide transport (NMT) family protein
1095	 36.18	0	1481277..1482224	-	315	187932007	-	FTM_1376	-	ROK family protein
1096	 34.47	0	1482224..1483189	-	321	187932008	-	FTM_1377	-	ROK family protein
1097	 33.26	0	1483199..1484548	-	449	187932009	-	FTM_1378	-	RNA methyltransferase, trmA family
1098	 32.64	0	1484637..1485209	-	190	187932010	-	FTM_1379	-	hypothetical protein
1099	 31.96	0	1485474..1485692	-	72	187932011	rpoZ	FTM_1381	-	DNA-directed RNA polymerase, omega subunit
1100	 29.73	0	1485685..1486350	-	221	187932012	udk	FTM_1382	-	uridine kinase
1101	 36.59	+1	1486361..1487188	-	275	187932013	kdsA	FTM_1383	-	3-deoxy-D-manno-octulosonic acid 8-phosphate synthase
1102	 36.75	+1	1487219..1487569	-	116	187932014	-	FTM_1384	-	hypothetical protein
1103	 35.98	0	1487575..1489656	-	693	187932015	pnp	FTM_1385	-	polyribonucleotide nucleotidyltransferase
1104	 30.34	0	1489712..1489978	-	88	187932016	rpsO	FTM_1386	-	30S ribosomal protein S15
1105	 35.22	0	1490085..1491779	-	564	187932017	ftsI	FTM_1387	-	cell division protein, peptidoglycan synthetase (PBP)
1106	 29.06	-1	1491772..1492122	-	116	187932018	-	FTM_1388	-	hypothetical protein
1107	 33.44	0	1492119..1493036	-	305	187932019	mraW	FTM_1389	-	S-adenosyl-methyltransferase MraW
1108	 33.10	0	1493042..1495141	-	699	187932020	-	FTM_1390	-	hypothetical protein
1109	 29.70	0	1495235..1496059	+	274	187932021	mutM	FTM_1391	-	Formamidopyrimidine-DNA glycosylase
1110	 32.41	0	1496888..1497427	-	179	187932022	-	FTM_1392	-	glutamine amidotransferase, SNO family
1111	 39.00	+1	1497430..1498293	-	287	187932023	-	FTM_1393	-	pyridoxine/pyridoxal 5-phosphate biosynthesis protein
1112	 34.74	0	1498423..1500834	-	803	187932024	gyrB	FTM_1394	-	DNA gyrase, B subunit
1113	 34.08	0	1501016..1501816	+	266	187932025	-	FTM_1395	-	hypothetical protein
1114	 32.42	0	1501850..1502833	+	327	187932026	-	FTM_1396	-	tRNA-dihydrouridine synthase
1115	 32.55	0	1502840..1503607	-	255	187932027	-	FTM_1397	-	protein-disulfide isomerase
1116	 31.82	0	1504597..1506510	-	637	187932028	-	FTM_1399	-	outer membrane protein of unknown function
1117	 37.97	+1	1506680..1507843	+	387	187932029	sucC	FTM_1400	-	succinyl-CoA synthetase beta chain
1118	 40.09	+2	1507875..1508747	+	290	187932030	sucD	FTM_1401	-	succinyl-CoA ligase [ADP-forming] subunit alpha
1119	 37.32	+1	1508859..1509284	+	141	187932031	-	FTM_1402	-	hypothetical membrane protein
1120	 29.49	0	1509667..1510707	+	346	187932032	-	FTM_1403	-	hypothetical protein
1121	 30.54	0	1510839..1512056	-	405	187932033	-	FTM_1404	-	hypothetical protein
1122	 33.20	0	1512286..1513731	+	481	187932034	-	FTM_1405	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1123	 36.05	0	1513735..1514655	+	306	187932035	-	FTM_1406	-	asparaginase
1124	 33.93	0	1515432..1515935	-	167	187932036	-	FTM_1408	-	hypothetical protein
1125	 33.47	0	1516268..1516990	+	240	187932037	cutC	FTM_1409	-	copper homeostasis protein CutC family protein
1126	 34.82	0	1517033..1518172	-	379	187932038	araJ	FTM_1410	-	conserved inner membrane protein of unknown function
1127	 31.56	0	1519246..1519920	+	224	187932039	gph	FTM_1412	-	phosphoglycolate phosphatase
1128	 36.91	+1	1521271..1522221	+	316	187932040	trxB	FTM_1414	-	thioredoxin reductase
1129	 26.31	-1	1522329..1523495	+	388	187932041	-	FTM_1415	-	major facilitator superfamily (MFS) transport protein
1130	 34.50	0	1524593..1526395	-	600	187932042	mutL	FTM_1417	-	DNA mismatch repair enzyme with ATPase activity
1131	 33.48	0	1526403..1527065	-	220	187932043	-	FTM_1418	-	hypothetical protein
1132	 38.19	+1	1527133..1527852	-	239	187932044	-	FTM_1419	-	hypothetical protein
1133	 32.32	0	1528006..1528893	+	295	187932045	-	FTM_1420	-	GTPase
1134	 40.07	+2	1529110..1529925	+	271	187932046	-	FTM_1421	-	lipoprotein, putative
1135	 30.20	0	1530178..1531359	-	393	187932047	potF	FTM_1422	-	ATP-binding cassette putrescine uptake system, periplasmic protein
1136	 33.48	0	1531443..1532852	+	469	187932048	-	FTM_1423	-	amino acid-polyamine-organocation (APC) superfamily protein
1137	 29.90	0	1532954..1534060	+	368	187932049	perM	FTM_1424	-	PerM family protein
1138	 33.05	0	1534054..1535796	+	580	187932050	recJ	FTM_1425	-	single-stranded-DNA-specific exonuclease RecJ
1139	 27.71	-1	1535793..1536575	+	260	187932051	-	FTM_1426	-	birA-like protein
1140	 30.95	0	1536572..1537495	+	307	187932052	-	FTM_1427	-	tRNA synthetase class II (D, K and N)
1141	 28.78	-1	1537500..1538618	-	372	187932053	-	FTM_1428	-	mechanosensitive ion channel protein
1142	 29.96	0	1538644..1539324	-	226	187932054	-	FTM_1429	-	hypothetical membrane protein
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.