IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1010	 30.92	0	1361104..1362597	-	497	187931922	-	FTM_1272	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1011	 31.50	0	1362722..1363429	-	235	187931923	-	FTM_1273	-	hypothetical protein
1012	 30.05	0	1363441..1363836	-	131	187931924	-	FTM_1274	-	hypothetical protein
1013	 32.36	0	1363923..1364945	+	340	187931925	-	FTM_1275	-	integral membrane protein
1014	 30.72	0	1364934..1365584	-	216	187931926	serB	FTM_1276	-	phosphoserine phosphatase
1015	 31.00	0	1366198..1367655	+	485	187931927	-	FTM_1277	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1016	 30.68	0	1367784..1368047	-	87	187931928	-	FTM_1278	-	hypothetical protein
1017	 35.49	0	1368983..1369861	-	292	187931929	rpoH	FTM_1279	-	RNA polymerase sigma-32 factor
1018	 33.74	0	1369885..1370373	-	162	187931930	-	FTM_1280	-	hypothetical protein
1019	 32.70	0	1370447..1371391	-	314	187931931	secF	FTM_1281	-	preprotein translocase, subunit F, membrane protein
1020	 35.35	0	1371410..1373347	-	645	187931932	secD	FTM_1282	-	preprotein translocase, subunit D, membrane protein
1021	 34.45	0	1373404..1373760	-	118	187931933	yajC	FTM_1283	-	preprotein translocase, YajC subunit
1022	 35.08	0	1374316..1374888	-	190	187931934	-	FTM_1284	-	isochorismatase hydrolase family protein
1023	 37.05	+1	1376739..1377842	-	367	187931935	tgt	FTM_1287	-	queuine tRNA-ribosyltransferase
1024	 39.70	+2	1378825..1379091	-	88	187931936	-	FTM_1289	-	hypothetical protein
1025	 37.43	+1	1379247..1379588	-	113	187931937	-	FTM_1290	-	hypothetical protein
1026	 34.15	0	1380224..1380838	+	204	187931938	-	FTM_1291	-	hypothetical protein
1027	 34.76	0	1381854..1383326	+	490	187931939	metIQ	FTM_1293	-	methionine uptake transporter (MUT) family protein, membrane and periplasmic protein
1028	 28.30	-1	1383397..1384608	+	403	187931940	-	FTM_1294	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
1029	 33.86	0	1384683..1385438	+	251	187931941	-	FTM_1295	-	rhodanese-like family protein
1030	 31.67	0	1385445..1385924	+	159	187931942	ispF	FTM_1296	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1031	 34.46	0	1385929..1387614	-	561	187931943	-	FTM_1297	-	Mur ligase family protein
1032	 36.27	+1	1387640..1390462	-	940	187931944	cphA	FTM_1298	-	cyanophycin synthetase
1033	 29.08	-1	1391317..1392069	-	250	187931945	glpQ	FTM_1300	-	glycerophosphoryl diester phosphodiesterase
1034	 34.35	0	1392227..1394005	+	592	187931946	pilB	FTM_1301	-	Type IV pili ATPase
1035	 34.15	0	1394020..1395249	+	409	187931947	pilC	FTM_1302	-	Type IV pili polytopic inner membrane protein
1036	 26.15	-1	1396500..1396889	-	129	187931948	-	FTM_1304	-	hypothetical protein
1037	 37.93	+1	1396852..1397112	-	86	187931949	-	FTM_1305	-	hypothetical protein
1038	 29.44	0	1397246..1398247	+	333	187931950	hemH	FTM_1306	-	ferrochelatase
1039	 34.15	0	1402085..1403923	-	612	187931951	uvrC	FTM_1311	-	excinuclease ABC, C subunit
1040	 28.40	-1	1404032..1405126	+	364	187931952	rnd	FTM_1312	-	ribonuclease D
1041	 32.26	0	1405155..1406369	+	404	187931953	-	FTM_1313	-	drug:H+ antiporter-1 (DHA1) family protein
1042	 35.45	0	1406366..1406743	-	125	187931954	-	FTM_1314	-	hypothetical protein
1043	 36.08	0	1407130..1407384	-	84	187931955	rpmA	FTM_1315	-	ribosomal protein L27
1044	 38.73	+1	1407415..1407729	-	104	187931956	rplU	FTM_1316	-	ribosomal protein L21
1045	 35.02	0	1409797..1412517	-	906	187931957	secA	FTM_1319	-	preprotein translocase, subunit A (ATPase, RNA helicase)
1046	 29.83	0	1412649..1413677	+	342	187931958	-	FTM_1320	-	hypothetical protein
1047	 28.00	-1	1413681..1414130	+	149	187931959	-	FTM_1321	-	hypothetical protein
1048	 33.20	0	1414127..1414849	-	240	187931960	deoD	FTM_1322	-	purine nucleoside phosphorylase
1049	 38.01	+1	1415910..1417856	-	648	187931961	hflB	FTM_1323	-	ATP-dependent metalloprotease
1050	 35.78	0	1419461..1422283	-	940	187931962	uvrA	FTM_1325	-	excinuclease ABC, A subunit
1051	 34.37	0	1422322..1422804	-	160	187931963	greA	FTM_1326	-	transcriptional elongation factor
1052	 35.73	0	1422838..1423422	-	194	187931964	fimT	FTM_1327	-	type IV pili, pilus assembly protein
1053	 32.78	0	1423423..1425045	-	540	187931965	pgi	FTM_1328	-	glucose-6-phosphate isomerase
1054	 28.13	-1	1425032..1425685	-	217	187931966	-	FTM_1329	-	predicted thiamine pyrophosphokinase
1055	 38.74	+1	1425751..1427211	-	486	187931967	guaB	FTM_1330	-	IMP dehydrogenase/GMP reductase
1056	 35.14	0	1427312..1428751	-	479	187931968	pepA	FTM_1331	-	cytosol aminopeptidase
1057	 29.36	-1	1428917..1429999	+	360	187931969	-	FTM_1332	-	hypothetical protein
1058	 31.45	0	1429999..1431060	+	353	187931970	-	FTM_1333	-	permease YjgP/YjgQ family protein
1059	 31.90	0	1431068..1432321	+	417	187931971	-	FTM_1334	-	metallopeptidase M16 family protein
1060	 31.13	0	1432328..1433551	+	407	187931972	-	FTM_1335	-	Zn-dependent peptidase M16 family protein
1061	 29.36	-1	1433552..1434130	+	192	187931973	-	FTM_1336	-	N6-adenine-specific methylase
1062	 32.41	0	1434164..1434814	+	216	187931974	-	FTM_1337	-	hypothetical protein
1063	 33.01	0	1434867..1435478	-	203	187931975	miaE	FTM_1338	-	tRNA-(ms(2)io(6)A)-hydroxylase
1064	 33.33	0	1435594..1436397	+	267	187931976	udp	FTM_1339	-	uridine phosphorylase
1065	 32.09	0	1436418..1436819	+	133	187931977	cdd	FTM_1340	-	cytidine deaminase
1066	 33.83	0	1437017..1440046	-	1009	187931978	-	FTM_1342	-	4Fe-4S ferredoxin, FAD dependent
1067	 34.76	0	1440264..1441802	+	512	187931979	gpmI	FTM_1343	-	phosphoglycerate mutase, cofactor independent
1068	 34.74	0	1441817..1443097	+	426	187931980	serS	FTM_1344	-	seryl-tRNA synthetase
1069	 36.11	0	1443207..1444106	+	299	187931981	cscK	FTM_1345	-	ROK family protein
1070	 30.32	0	1444184..1445443	+	419	187931982	-	FTM_1346	-	multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter
1071	 30.85	0	1445447..1445647	-	66	187931983	-	FTM_1347	-	hypothetical protein
1072	 33.53	0	1445675..1446184	-	169	187931984	-	FTM_1348	-	hypothetical protein
1073	 33.28	0	1446561..1448342	+	593	187931985	cydD	FTM_1349	-	ABC-type transport ATP-binding protein CydD
1074	 32.73	0	1448339..1449988	+	549	187931986	cydC	FTM_1350	-	ABC-type transport ATP-binding protein CydC
1075	 33.01	0	1449990..1451240	-	416	187931987	dctA	FTM_1351	-	aerobic C4-dicarboxylate transport protein
1076	 34.65	0	1451379..1451759	-	126	187931988	-	FTM_1352	-	endoribonuclease L-PSP
1077	 30.29	0	1453577..1454695	-	372	187931989	-	FTM_1354	-	ABC transporter, membrane protein
1078	 31.22	0	1455621..1456424	-	267	187931990	-	FTM_1356	-	hypothetical protein
1079	 34.20	0	1456730..1457764	+	344	187931991	ugpQ	FTM_1357	-	glycerophosphoryl diester phosphodiesterase family protein
1080	 36.29	+1	1457871..1459187	+	438	187931992	glpT	FTM_1358	-	glycerol-3-phosphate transporter
1081	 38.19	+1	1463195..1465420	+	741	187931993	katG	FTM_1361	-	peroxidase/catalase
1082	 32.05	0	1465524..1466849	+	441	187931994	-	FTM_1362	-	dGTP triphosphohydrolase
1083	 31.29	0	1466833..1468053	-	406	187931995	-	FTM_1363	-	metabolite:H+ symporter (MHS) family protein
1084	 33.33	0	1468114..1468458	-	114	187931996	-	FTM_1364	-	hypothetical protein
1085	 36.67	+1	1469466..1470095	-	209	187931997	upp	FTM_1366	-	uracil phosphoribosyltransferase
1086	 36.34	+1	1470289..1472619	-	776	187931998	chiA	FTM_1367	-	chitinase, glycosyl hydrolase family 18
1087	 34.50	0	1473153..1474349	+	398	187931999	kbl	FTM_1368	-	2-amino-3-ketobutyrate coenzyme A ligase
1088	 37.50	+1	1474372..1475427	+	351	187932000	tdh	FTM_1369	-	L-threonine 3-dehydrogenase
1089	 27.55	-1	1475429..1476691	+	420	187932001	-	FTM_1370	-	serine permease
1090	 31.88	0	1476696..1477385	-	229	187932002	ispD	FTM_1371	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1091	 30.24	0	1477375..1477665	-	96	187932003	ftsB	FTM_1372	-	cell division protein, septum formation initiator
1092	 36.03	0	1477673..1479043	-	456	187932004	eno	FTM_1373	-	enolase (2-phosphoglycerate dehydratase)
1093	 31.96	0	1479152..1480390	-	412	187932005	-	FTM_1374	-	major facilitator superfamily (MFS) transport protein
1094	 27.19	-1	1480493..1481257	-	254	187932006	-	FTM_1375	-	nicotinamide mononucleotide transport (NMT) family protein
1095	 36.18	0	1481277..1482224	-	315	187932007	-	FTM_1376	-	ROK family protein
1096	 34.47	0	1482224..1483189	-	321	187932008	-	FTM_1377	-	ROK family protein
1097	 33.26	0	1483199..1484548	-	449	187932009	-	FTM_1378	-	RNA methyltransferase, trmA family
1098	 32.64	0	1484637..1485209	-	190	187932010	-	FTM_1379	-	hypothetical protein
1099	 31.96	0	1485474..1485692	-	72	187932011	rpoZ	FTM_1381	-	DNA-directed RNA polymerase, omega subunit
1100	 29.73	0	1485685..1486350	-	221	187932012	udk	FTM_1382	-	uridine kinase
1101	 36.59	+1	1486361..1487188	-	275	187932013	kdsA	FTM_1383	-	3-deoxy-D-manno-octulosonic acid 8-phosphate synthase
1102	 36.75	+1	1487219..1487569	-	116	187932014	-	FTM_1384	-	hypothetical protein
1103	 35.98	0	1487575..1489656	-	693	187932015	pnp	FTM_1385	-	polyribonucleotide nucleotidyltransferase
1104	 30.34	0	1489712..1489978	-	88	187932016	rpsO	FTM_1386	-	30S ribosomal protein S15
1105	 35.22	0	1490085..1491779	-	564	187932017	ftsI	FTM_1387	-	cell division protein, peptidoglycan synthetase (PBP)
1106	 29.06	-1	1491772..1492122	-	116	187932018	-	FTM_1388	-	hypothetical protein
1107	 33.44	0	1492119..1493036	-	305	187932019	mraW	FTM_1389	-	S-adenosyl-methyltransferase MraW
1108	 33.10	0	1493042..1495141	-	699	187932020	-	FTM_1390	-	hypothetical protein
1109	 29.70	0	1495235..1496059	+	274	187932021	mutM	FTM_1391	-	Formamidopyrimidine-DNA glycosylase
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.