IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. mediasiatica FSC147



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.84 STD DEV: 3.41
Francisella tularensis subsp. mediasiatica FSC147, complete genome - 1..1893886
1406 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
968	 32.40	0	1293491..1293919	+	142	187931880	-	FTM_1211	-	hypothetical protein
969	 25.87	-2	1293919..1295178	+	419	187931881	-	FTM_1212	-	hypothetical membrane protein
970	 33.48	0	1295294..1295980	+	228	187931882	-	FTM_1213	-	hypothetical protein
971	 30.56	0	1296025..1299450	+	1141	187931883	mfd	FTM_1214	-	transcription-repair coupling factor
972	 28.93	-1	1300644..1300961	-	105	187931884	ilvN	FTM_1216	-	acetolactate synthase, small subunit
973	 37.31	+1	1302806..1304488	-	560	187931885	ilvD	FTM_1218	-	dihydroxy-acid dehydratase
974	 35.53	0	1307899..1308126	+	75	187931886	-	FTM_1220	-	transcriptional regulator
975	 30.61	0	1308129..1309487	+	452	187931887	-	FTM_1221	-	transcription regulator
976	 37.39	+1	1309509..1310690	-	393	187931888	-	FTM_1222	-	hypothetical protein
977	 38.70	+1	1310705..1310965	-	86	187931889	-	FTM_1223	-	hypothetical protein
978	 30.62	0	1313317..1313574	-	85	187931890	-	FTM_1227	-	hypothetical protein
979	 29.62	0	1313579..1314439	-	286	187931891	rdgC	FTM_1228	-	recombination associated protein
980	 33.74	0	1314629..1315615	+	328	187931892	-	FTM_1229	-	putative rhodanese, sulfurtransferase
981	 31.50	0	1316632..1318647	-	671	187931893	rep	FTM_1231	-	UvrD/REP superfamily I DNA and RNA helicase
982	 31.06	0	1318641..1319387	-	248	187931894	-	FTM_1232	-	hypothetical protein
983	 25.40	-2	1320009..1320512	+	167	187931895	-	FTM_1233	-	isochorismatase hydrolase family protein
984	 25.36	-2	1321200..1321688	+	162	187931896	-	FTM_1235	-	isochorismatase hydrolase family protein
985	 31.59	0	1321838..1322296	-	152	187931897	-	FTM_1236	-	hypothetical protein
986	 32.51	0	1322319..1323284	-	321	187931898	talA	FTM_1237	-	transaldolase
987	 34.49	0	1323422..1324801	-	459	187931899	pepB	FTM_1238	-	cytosol aminopeptidase
988	 32.97	0	1324804..1326186	-	460	187931900	-	FTM_1239	-	putative outer membrane efflux protein
989	 34.37	0	1326194..1328791	-	865	187931901	alaS	FTM_1240	-	alanyl-tRNA synthetase
990	 34.00	0	1328947..1329393	+	148	187931902	-	FTM_1241	-	hypothetical protein
991	 26.49	-1	1331481..1331816	-	111	187931903	-	FTM_1243	-	hypothetical protein
992	 27.94	-1	1331847..1332254	+	135	187931904	-	FTM_1244	-	hypothetical protein
993	 36.27	+1	1333741..1334862	+	373	187931905	-	FTM_1247	-	protein-disulfide isomerase
994	 33.22	0	1336311..1337165	-	284	187931906	-	FTM_1249	-	peptide methionine sulfoxide reductase
995	 34.31	0	1337762..1339714	-	650	187931907	betT	FTM_1251	-	betaine/carnitine/choline transporter (BCCT) family protein
996	 35.19	0	1339856..1340608	+	250	187931908	spoU	FTM_1252	-	rRNA methyltransferase
997	 32.91	0	1340702..1341649	+	315	187931909	-	FTM_1253	-	choloylglycine hydrolase family protein
998	 38.98	+1	1341814..1342167	+	117	187931910	-	FTM_1254	-	hypothetical protein
999	 30.27	0	1343989..1344282	-	97	187931911	-	FTM_1256	-	hypothetical protein
1000	 37.57	+1	1350948..1352126	-	392	187931912	fopA	FTM_1261	-	outer membrane protein FopA
1001	 33.74	0	1352236..1352481	-	81	187931913	-	FTM_1262	-	4Fe-4S ferredoxin
1002	 32.72	0	1352486..1352974	-	162	187931914	coaD	FTM_1263	-	phosphopantetheine adenylyltransferase
1003	 33.88	0	1352986..1353537	-	183	187931915	-	FTM_1264	-	hypothetical protein
1004	 33.33	0	1353551..1353907	-	118	187931916	-	FTM_1265	-	hypothetical protein
1005	 34.48	0	1353928..1355151	-	407	187931917	sufS	FTM_1266	-	selenocysteine lyase
1006	 35.88	0	1355254..1356627	-	457	187931918	sdaA	FTM_1267	-	L-serine dehydratase
1007	 26.91	-1	1356683..1357351	-	222	187931919	-	FTM_1268	-	predicted metal-dependent hydrolase
1008	 31.20	0	1357377..1358219	-	280	187931920	pheA	FTM_1269	-	prephenate dehydratase
1009	 32.24	0	1359994..1361091	-	365	187931921	alr	FTM_1271	-	alanine racemase
1010	 30.92	0	1361104..1362597	-	497	187931922	-	FTM_1272	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1011	 31.50	0	1362722..1363429	-	235	187931923	-	FTM_1273	-	hypothetical protein
1012	 30.05	0	1363441..1363836	-	131	187931924	-	FTM_1274	-	hypothetical protein
1013	 32.36	0	1363923..1364945	+	340	187931925	-	FTM_1275	-	integral membrane protein
1014	 30.72	0	1364934..1365584	-	216	187931926	serB	FTM_1276	-	phosphoserine phosphatase
1015	 31.00	0	1366198..1367655	+	485	187931927	-	FTM_1277	-	proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter
1016	 30.68	0	1367784..1368047	-	87	187931928	-	FTM_1278	-	hypothetical protein
1017	 35.49	0	1368983..1369861	-	292	187931929	rpoH	FTM_1279	-	RNA polymerase sigma-32 factor
1018	 33.74	0	1369885..1370373	-	162	187931930	-	FTM_1280	-	hypothetical protein
1019	 32.70	0	1370447..1371391	-	314	187931931	secF	FTM_1281	-	preprotein translocase, subunit F, membrane protein
1020	 35.35	0	1371410..1373347	-	645	187931932	secD	FTM_1282	-	preprotein translocase, subunit D, membrane protein
1021	 34.45	0	1373404..1373760	-	118	187931933	yajC	FTM_1283	-	preprotein translocase, YajC subunit
1022	 35.08	0	1374316..1374888	-	190	187931934	-	FTM_1284	-	isochorismatase hydrolase family protein
1023	 37.05	+1	1376739..1377842	-	367	187931935	tgt	FTM_1287	-	queuine tRNA-ribosyltransferase
1024	 39.70	+2	1378825..1379091	-	88	187931936	-	FTM_1289	-	hypothetical protein
1025	 37.43	+1	1379247..1379588	-	113	187931937	-	FTM_1290	-	hypothetical protein
1026	 34.15	0	1380224..1380838	+	204	187931938	-	FTM_1291	-	hypothetical protein
1027	 34.76	0	1381854..1383326	+	490	187931939	metIQ	FTM_1293	-	methionine uptake transporter (MUT) family protein, membrane and periplasmic protein
1028	 28.30	-1	1383397..1384608	+	403	187931940	-	FTM_1294	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
1029	 33.86	0	1384683..1385438	+	251	187931941	-	FTM_1295	-	rhodanese-like family protein
1030	 31.67	0	1385445..1385924	+	159	187931942	ispF	FTM_1296	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1031	 34.46	0	1385929..1387614	-	561	187931943	-	FTM_1297	-	Mur ligase family protein
1032	 36.27	+1	1387640..1390462	-	940	187931944	cphA	FTM_1298	-	cyanophycin synthetase
1033	 29.08	-1	1391317..1392069	-	250	187931945	glpQ	FTM_1300	-	glycerophosphoryl diester phosphodiesterase
1034	 34.35	0	1392227..1394005	+	592	187931946	pilB	FTM_1301	-	Type IV pili ATPase
1035	 34.15	0	1394020..1395249	+	409	187931947	pilC	FTM_1302	-	Type IV pili polytopic inner membrane protein
1036	 26.15	-1	1396500..1396889	-	129	187931948	-	FTM_1304	-	hypothetical protein
1037	 37.93	+1	1396852..1397112	-	86	187931949	-	FTM_1305	-	hypothetical protein
1038	 29.44	0	1397246..1398247	+	333	187931950	hemH	FTM_1306	-	ferrochelatase
1039	 34.15	0	1402085..1403923	-	612	187931951	uvrC	FTM_1311	-	excinuclease ABC, C subunit
1040	 28.40	-1	1404032..1405126	+	364	187931952	rnd	FTM_1312	-	ribonuclease D
1041	 32.26	0	1405155..1406369	+	404	187931953	-	FTM_1313	-	drug:H+ antiporter-1 (DHA1) family protein
1042	 35.45	0	1406366..1406743	-	125	187931954	-	FTM_1314	-	hypothetical protein
1043	 36.08	0	1407130..1407384	-	84	187931955	rpmA	FTM_1315	-	ribosomal protein L27
1044	 38.73	+1	1407415..1407729	-	104	187931956	rplU	FTM_1316	-	ribosomal protein L21
1045	 35.02	0	1409797..1412517	-	906	187931957	secA	FTM_1319	-	preprotein translocase, subunit A (ATPase, RNA helicase)
1046	 29.83	0	1412649..1413677	+	342	187931958	-	FTM_1320	-	hypothetical protein
1047	 28.00	-1	1413681..1414130	+	149	187931959	-	FTM_1321	-	hypothetical protein
1048	 33.20	0	1414127..1414849	-	240	187931960	deoD	FTM_1322	-	purine nucleoside phosphorylase
1049	 38.01	+1	1415910..1417856	-	648	187931961	hflB	FTM_1323	-	ATP-dependent metalloprotease
1050	 35.78	0	1419461..1422283	-	940	187931962	uvrA	FTM_1325	-	excinuclease ABC, A subunit
1051	 34.37	0	1422322..1422804	-	160	187931963	greA	FTM_1326	-	transcriptional elongation factor
1052	 35.73	0	1422838..1423422	-	194	187931964	fimT	FTM_1327	-	type IV pili, pilus assembly protein
1053	 32.78	0	1423423..1425045	-	540	187931965	pgi	FTM_1328	-	glucose-6-phosphate isomerase
1054	 28.13	-1	1425032..1425685	-	217	187931966	-	FTM_1329	-	predicted thiamine pyrophosphokinase
1055	 38.74	+1	1425751..1427211	-	486	187931967	guaB	FTM_1330	-	IMP dehydrogenase/GMP reductase
1056	 35.14	0	1427312..1428751	-	479	187931968	pepA	FTM_1331	-	cytosol aminopeptidase
1057	 29.36	-1	1428917..1429999	+	360	187931969	-	FTM_1332	-	hypothetical protein
1058	 31.45	0	1429999..1431060	+	353	187931970	-	FTM_1333	-	permease YjgP/YjgQ family protein
1059	 31.90	0	1431068..1432321	+	417	187931971	-	FTM_1334	-	metallopeptidase M16 family protein
1060	 31.13	0	1432328..1433551	+	407	187931972	-	FTM_1335	-	Zn-dependent peptidase M16 family protein
1061	 29.36	-1	1433552..1434130	+	192	187931973	-	FTM_1336	-	N6-adenine-specific methylase
1062	 32.41	0	1434164..1434814	+	216	187931974	-	FTM_1337	-	hypothetical protein
1063	 33.01	0	1434867..1435478	-	203	187931975	miaE	FTM_1338	-	tRNA-(ms(2)io(6)A)-hydroxylase
1064	 33.33	0	1435594..1436397	+	267	187931976	udp	FTM_1339	-	uridine phosphorylase
1065	 32.09	0	1436418..1436819	+	133	187931977	cdd	FTM_1340	-	cytidine deaminase
1066	 33.83	0	1437017..1440046	-	1009	187931978	-	FTM_1342	-	4Fe-4S ferredoxin, FAD dependent
1067	 34.76	0	1440264..1441802	+	512	187931979	gpmI	FTM_1343	-	phosphoglycerate mutase, cofactor independent
32.84	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.