IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
900	 33.33	0	969150..969623	+	157	89256348	-	FTL_1004	-	D-alanyl-D-alanine carboxypeptidase
901	 31.06	0	969610..971019	+	469	89256349	-	FTL_1005	-	hypothetical protein
902	 37.88	+1	972468..972929	+	153	89256350	-	FTL_1009	-	aldehyde dehydrogenase
903	 30.04	0	973493..973765	+	90	89256351	-	FTL_1012	-	hypothetical protein
904	 29.51	0	973779..974510	+	243	89256352	-	FTL_1013	-	hypothetical protein
905	 30.11	0	974513..975382	-	289	89256353	-	FTL_1014	-	oxidative stress transcriptional regulator
906	 33.33	0	975480..976004	+	174	89256354	-	FTL_1015	-	AhpC/TSA family protein
907	 32.68	0	976007..976618	+	203	89256355	-	FTL_1016	-	short chain dehydrogenase
908	 33.18	0	976635..977300	-	221	89256356	-	FTL_1017	-	cytidylate kinase
909	 30.86	0	977287..978339	-	350	89256357	-	FTL_1018	-	phosphoserine aminotransferase
910	 19.22	-2	978414..978668	-	84	89256358	-	FTL_1019	-	hypothetical protein
911	 31.56	0	978659..979539	+	293	89256359	isftu1	FTL_1020	-	transposase
912	 31.34	0	979517..980572	-	351	89256360	-	FTL_1021	-	hypothetical protein
913	 33.98	0	980597..981523	-	308	89256361	-	FTL_1022	-	coproporphyrinogen III oxidase
914	 28.91	-1	981903..982943	+	346	89256362	isftu2	FTL_1023	-	transposase
915	 36.01	+1	983058..983393	+	111	89256363	rpsF	FTL_1024	-	30S ribosomal protein S6
916	 33.79	0	983409..983627	+	72	89256364	rpsR	FTL_1025	-	30S ribosomal protein S18
917	 37.72	+1	983646..984101	+	151	89256365	rplI	FTL_1026	-	50S ribosomal protein L9
918	 35.20	0	984192..985586	+	464	89256366	-	FTL_1027	-	replicative DNA helicase
919	 34.68	0	985617..986729	+	370	89256367	-	FTL_1028	-	radical SAM superfamily protein
920	 31.68	0	986719..987624	+	301	89256368	-	FTL_1029	-	Type IV pili lipoprotein
921	 34.80	0	987617..988432	+	271	89256369	-	FTL_1030	-	ribosomal large subunit pseudouridine synthase B
922	 22.54	-2	988432..988857	+	141	89256370	-	FTL_1031	-	hypothetical protein
923	 26.30	-1	988835..989275	+	146	89256371	-	FTL_1032	-	ribosomal-protein-alanine acetyltransferase
924	 33.23	0	992306..993259	+	317	89256372	-	FTL_1034	-	sulfate adenylate transferase subunit 1
925	 31.39	0	993256..993717	+	153	89256373	-	FTL_1035	-	sulfate adenylyltransferase.
926	 30.52	0	993877..994338	+	153	89256374	-	FTL_1036	-	adenylylsulfate kinase, fragment
927	 25.57	-2	994763..995329	+	188	89256375	-	FTL_1037	-	hypothetical protein
928	 28.42	-1	995381..995746	+	121	89256376	-	FTL_1038	-	hypothetical protein
929	 24.52	-2	996413..997036	+	207	89256377	-	FTL_1039	-	hypothetical protein
930	 30.79	0	997117..997548	+	143	89256378	-	FTL_1040	-	hypothetical protein
931	 31.80	0	997638..998615	+	325	89256379	-	FTL_1041	-	octaprenyl-diphosphate synthase
932	 34.32	0	998633..999445	-	270	89256380	-	FTL_1042	-	FKBP-type peptidyl-prolyl cis-trans isomerase family protein
933	 31.22	0	999459..1000262	-	267	89256381	-	FTL_1043	-	hypothetical protein
934	 29.02	-1	1000255..1000671	-	138	89256382	-	FTL_1044	-	hypothetical protein
935	 34.31	0	1000687..1001298	-	203	89256383	-	FTL_1045	-	lipoprotein
936	 32.12	0	1001299..1002702	-	467	89256384	-	FTL_1046	-	D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein
937	 36.36	+1	1002958..1003155	+	65	89256385	rpsU	FTL_1047	-	30S ribosomal protein S21
938	 33.33	0	1003216..1003662	+	148	89256386	-	FTL_1048	-	hypothetical protein
939	 31.13	0	1003683..1005500	+	605	89256387	-	FTL_1049	-	DNA primase
940	 32.18	0	1005525..1007258	+	577	89256388	-	FTL_1050	-	RNA polymerase sigma-70 factor
941	 29.26	0	1007365..1008615	+	416	89256389	-	FTL_1051	-	NADH dehydrogenase
942	 31.71	0	1008728..1008973	-	81	89256390	-	FTL_1052	-	putative glycosidase
943	 36.67	+1	1008946..1009395	-	149	89256391	-	FTL_1053	-	putative alpha-xylosidase
944	 35.37	0	1009400..1009840	-	146	89256392	-	FTL_1054	-	putative alpha-xylosidase
945	 32.85	0	1012669..1013289	-	206	89256393	-	FTL_1058	-	lipoate-protein ligase B
946	 28.77	-1	1013299..1013583	-	94	89256394	-	FTL_1059	-	hypothetical protein
947	 35.96	+1	1013616..1014950	-	444	89256395	-	FTL_1060	-	D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein
948	 32.18	0	1015107..1015628	+	173	89256396	-	FTL_1061	-	inorganic pyrophosphatase
949	 31.69	0	1015719..1016267	+	182	89256397	-	FTL_1062	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
950	 29.67	0	1016275..1016901	+	208	89256398	-	FTL_1063	-	hypothetical protein
951	 29.74	0	1016888..1017721	+	277	89256399	-	FTL_1064	-	hypothetical protein
952	 37.98	+1	1017795..1018526	+	243	89256400	-	FTL_1065	-	ABC transporter, ATP-binding protein
953	 28.11	-1	1018575..1019168	+	197	89256401	-	FTL_1066	-	fumarylacetoacetate hydrolase family protein
954	 33.33	0	1019181..1021013	+	610	89256402	-	FTL_1067	-	hypothetical protein
955	 33.20	0	1021016..1021792	+	258	89256403	truA	FTL_1068	-	tRNA pseudouridine synthase A
956	 33.33	0	1021848..1022960	+	370	89256404	-	FTL_1069	-	amino acid permease
957	 29.27	0	1023146..1023391	+	81	89256405	-	FTL_1070	-	hypothetical protein
958	 34.56	0	1023479..1025029	+	516	89256406	guaA	FTL_1071	-	bifunctional GMP synthase/glutamine amidotransferase protein
959	 34.69	0	1025111..1026958	+	615	89256407	-	FTL_1072	-	1-deoxy-D-xylulose-5-phosphate synthase
960	 31.25	0	1026974..1027309	+	111	89256408	-	FTL_1073	-	hypothetical protein
961	 31.11	0	1027331..1027960	+	209	89256409	-	FTL_1074	-	GDSL-like lipase/acylhydrolase family protein
962	 30.12	0	1027970..1028560	-	196	89256410	-	FTL_1075	-	hypothetical protein
963	 29.89	0	1028678..1029403	+	241	89256411	-	FTL_1076	-	short chain dehydrogenase family protein
964	 37.06	+1	1029467..1030513	+	348	89256412	ruvB	FTL_1077	-	Holliday junction DNA helicase B
965	 25.49	-2	1031796..1031999	-	67	89256413	-	FTL_1079	-	helix-turn-helix family protein
966	 26.98	-1	1032172..1032549	-	125	89256414	-	FTL_1080	-	hypothetical protein
967	 25.24	-2	1032902..1033321	+	139	89256415	-	FTL_1081	-	hypothetical protein
968	 28.23	-1	1033290..1033622	+	110	89256416	-	FTL_1082	-	hypothetical protein
969	 28.87	-1	1033607..1033897	-	96	89256417	-	FTL_1083	-	hypothetical protein
970	 24.77	-2	1034256..1034582	-	108	89256418	-	FTL_1084	-	hypothetical protein
971	 27.31	-1	1034661..1034876	-	71	89256419	-	FTL_1085	-	hypothetical protein
972	 29.65	0	1035243..1035866	+	207	89256420	-	FTL_1086	-	proton-dependent oligopeptide transporter (POT) family protein
973	 29.19	0	1035817..1036443	-	208	89256421	isftu2	FTL_1087	-	transposase
974	 39.27	+1	1036686..1037039	-	117	89256422	-	FTL_1088	-	hypothetical protein
975	 31.22	0	1037417..1038172	-	251	89256423	-	FTL_1089	-	choloylglycine hydrolase family protein
976	 34.79	0	1038266..1039018	-	250	89256424	-	FTL_1090	-	rRNA methyltransferase
977	 32.98	0	1041501..1042355	+	284	89256425	-	FTL_1093	-	bifunctional methionine sulfoxide reductase B/A protein
978	 36.10	+1	1043815..1044936	-	373	89256426	-	FTL_1096	-	lipoprotein
979	 33.33	0	1044957..1045247	-	96	89256427	-	FTL_1097	-	macrophage infectivity potentiator, fragment
980	 28.19	-1	1046424..1046831	-	135	89256428	-	FTL_1100	-	hypothetical protein
981	 26.49	-1	1046862..1047197	+	111	89256429	-	FTL_1101	-	hypothetical protein
982	 34.23	0	1049106..1049552	-	148	89256430	-	FTL_1105	-	hypothetical protein
983	 34.53	0	1049708..1052305	+	865	89256431	-	FTL_1106	-	alanyl-tRNA synthetase
984	 32.97	0	1052322..1053695	+	457	89256432	-	FTL_1107	-	hypothetical protein
985	 34.64	0	1053698..1055077	+	459	89256433	-	FTL_1108	-	cytosol aminopeptidase family protein
986	 32.09	0	1055211..1056176	+	321	161353781	-	FTL_1109	-	transaldolase B
987	 30.94	0	1056202..1056660	+	152	89256435	-	FTL_1110	-	hypothetical protein
988	 26.92	-1	1056872..1057183	-	103	89256436	-	FTL_1111	-	isochorismatase hydrolase family protein
989	 29.31	0	1057410..1058180	+	256	89256437	isftu2	FTL_1112	-	transposase
990	 26.99	-1	1058231..1058908	-	225	89256438	-	FTL_1113	-	hypothetical protein
991	 25.05	-2	1058905..1059411	-	168	89256439	-	FTL_1114	-	isochorismatase hydrolase family protein
992	 31.06	0	1060034..1060780	+	248	89256440	-	FTL_1115	-	hypothetical protein
993	 31.45	0	1060774..1062789	+	671	89256441	-	FTL_1116	-	ATP-dependent DNA helicase
994	 31.53	0	1062845..1063675	+	276	89256442	-	FTL_1117	-	hypothetical protein
995	 33.84	0	1063806..1064792	-	328	89256443	-	FTL_1118	-	hypothetical protein
996	 29.73	0	1064986..1065846	+	286	89256444	rdgC	FTL_1119	-	recombination associated protein
997	 30.23	0	1065851..1066108	+	85	89256445	-	FTL_1120	-	hypothetical protein
998	 32.09	0	1066772..1067575	+	267	89256446	-	FTL_1121	-	hypothetical protein
999	 23.37	-2	1067575..1068126	+	183	89256447	-	FTL_1122	-	hypothetical protein
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.