IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
853	 22.45	-2	921539..921685	-	48	89256301	-	FTL_0952	-	hypothetical protein
854	 26.85	-1	921901..922347	-	148	89256302	-	FTL_0953	-	hypothetical protein
855	 28.26	-1	922930..923205	-	91	89256303	-	FTL_0954	-	hypothetical protein
856	 34.71	0	923220..924311	-	363	89256304	-	FTL_0955	-	translation-associated GTPase
857	 32.47	0	924330..924905	-	191	89256305	-	FTL_0956	-	peptidyl-tRNA hydrolase
858	 31.07	0	924898..925782	-	294	89256306	-	FTL_0957	-	Beta-lactamase class A
859	 32.03	0	925791..926636	-	281	89256307	-	FTL_0958	-	hypothetical protein
860	 32.11	0	926676..927494	-	272	89256308	-	FTL_0959	-	Type IV pili leader peptidase and methylase.
861	 34.33	0	927498..928898	-	466	89256309	-	FTL_0960	-	soluble pyridine nucleotide transhydrogenase
862	 26.06	-1	929167..929853	-	228	89256310	-	FTL_0961	-	potassium channel protein
863	 28.21	-1	929877..930149	-	90	89256311	-	FTL_0962	-	hypothetical protein
864	 31.62	0	930229..931686	-	485	89256312	-	FTL_0963	-	proton-dependent oligopeptide transport (POT) family protein
865	 35.38	0	931784..933151	-	455	89256313	hslU	FTL_0964	-	ATP-dependent protease ATP-binding subunit
866	 34.42	0	933159..933710	-	183	89256314	-	FTL_0965	-	ATP-dependent protease peptidase subunit
867	 28.67	-1	933902..934651	+	249	89256315	-	FTL_0966	-	hypothetical protein
868	 29.13	0	934654..935556	-	300	89256316	-	FTL_0967	-	lipoate-protein ligase A
869	 34.51	0	935670..936860	+	396	89256317	-	FTL_0968	-	tyrosyl-tRNA synthetase
870	 31.56	0	937264..938144	-	293	89256318	isftu1	FTL_0969	-	transposase
871	 32.39	0	938212..939381	+	389	89256319	-	FTL_0970	-	L-lactate dehydrogenase
872	 32.75	0	939821..941200	+	459	89256320	-	FTL_0971	-	FAD linked oxidase
873	 31.68	0	943905..944750	+	281	89256321	-	FTL_0974	-	50S ribosomal protein L11, methyltransferase
874	 37.40	+1	944740..945723	+	327	89256322	-	FTL_0975	-	Nif3 family protein
875	 31.01	0	945953..948280	+	775	89256323	-	FTL_0976	-	hypothetical protein
876	 29.20	0	948522..948908	+	128	89256324	-	FTL_0977	-	hypothetical protein
877	 25.43	-2	948955..949245	+	96	89256325	-	FTL_0978	-	hypothetical protein
878	 23.49	-2	949297..949611	+	104	89256326	-	FTL_0979	-	hypothetical protein
879	 27.58	-1	949617..951023	+	468	89256327	-	FTL_0980	-	hypothetical protein
880	 33.33	0	951043..952092	-	349	89256328	-	FTL_0981	-	DNA polymerase IV, devoid of proofreading,damage inducible protein P
881	 32.01	0	952099..952701	-	200	89256329	-	FTL_0982	-	DJ-1/PfpI family protein
882	 35.04	0	953855..955087	-	410	89256330	-	FTL_0984	-	bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta
883	 29.12	0	955094..955354	-	86	89256331	-	FTL_0985	-	glutaredoxin 1
884	 35.98	+1	955358..957130	-	590	89256332	-	FTL_0986	-	ribonucleotide-diphosphate reductase subunit alpha
885	 36.25	+1	957334..958293	-	319	89256333	-	FTL_0987	-	lactate dehydrogenase
886	 30.02	0	958456..958968	+	170	89256334	-	FTL_0988	-	hypothetical protein
887	 36.48	+1	958984..959619	+	211	89256335	-	FTL_0989	-	ubiquinone biosynthesis protein
888	 31.58	0	959628..960197	-	189	89256336	-	FTL_0990	-	lipoprotein
889	 37.55	+1	961721..961981	-	86	89256337	-	FTL_0993	-	HesA/MoeB/ThiF family protein
890	 30.85	0	961985..963475	-	496	89256338	-	FTL_0994	-	hypothetical protein
891	 30.41	0	963530..964111	-	193	89256339	-	FTL_0995	-	haloacid dehalogenase
892	 37.00	+1	964207..964806	+	199	89256340	-	FTL_0996	-	AhpC/Tsa family protein
893	 32.34	0	964871..965374	+	167	89256341	-	FTL_0997	-	hypothetical protein
894	 30.69	0	965567..966247	+	226	89256342	-	FTL_0998	-	hypothetical protein
895	 33.33	0	966353..966619	+	88	89256343	-	FTL_0999	-	phosphonoacetate hydrolase
896	 27.78	-1	966692..966907	+	71	89256344	-	FTL_1000	-	hypothetical protein
897	 33.82	0	966911..967522	+	203	89256345	-	FTL_1001	-	hypothetical protein
898	 32.27	0	967658..968410	+	250	89256346	-	FTL_1002	-	hypothetical protein
899	 30.40	0	968440..969156	+	238	89256347	-	FTL_1003	-	DNA polymerase III, epsilon subunit
900	 33.33	0	969150..969623	+	157	89256348	-	FTL_1004	-	D-alanyl-D-alanine carboxypeptidase
901	 31.06	0	969610..971019	+	469	89256349	-	FTL_1005	-	hypothetical protein
902	 37.88	+1	972468..972929	+	153	89256350	-	FTL_1009	-	aldehyde dehydrogenase
903	 30.04	0	973493..973765	+	90	89256351	-	FTL_1012	-	hypothetical protein
904	 29.51	0	973779..974510	+	243	89256352	-	FTL_1013	-	hypothetical protein
905	 30.11	0	974513..975382	-	289	89256353	-	FTL_1014	-	oxidative stress transcriptional regulator
906	 33.33	0	975480..976004	+	174	89256354	-	FTL_1015	-	AhpC/TSA family protein
907	 32.68	0	976007..976618	+	203	89256355	-	FTL_1016	-	short chain dehydrogenase
908	 33.18	0	976635..977300	-	221	89256356	-	FTL_1017	-	cytidylate kinase
909	 30.86	0	977287..978339	-	350	89256357	-	FTL_1018	-	phosphoserine aminotransferase
910	 19.22	-2	978414..978668	-	84	89256358	-	FTL_1019	-	hypothetical protein
911	 31.56	0	978659..979539	+	293	89256359	isftu1	FTL_1020	-	transposase
912	 31.34	0	979517..980572	-	351	89256360	-	FTL_1021	-	hypothetical protein
913	 33.98	0	980597..981523	-	308	89256361	-	FTL_1022	-	coproporphyrinogen III oxidase
914	 28.91	-1	981903..982943	+	346	89256362	isftu2	FTL_1023	-	transposase
915	 36.01	+1	983058..983393	+	111	89256363	rpsF	FTL_1024	-	30S ribosomal protein S6
916	 33.79	0	983409..983627	+	72	89256364	rpsR	FTL_1025	-	30S ribosomal protein S18
917	 37.72	+1	983646..984101	+	151	89256365	rplI	FTL_1026	-	50S ribosomal protein L9
918	 35.20	0	984192..985586	+	464	89256366	-	FTL_1027	-	replicative DNA helicase
919	 34.68	0	985617..986729	+	370	89256367	-	FTL_1028	-	radical SAM superfamily protein
920	 31.68	0	986719..987624	+	301	89256368	-	FTL_1029	-	Type IV pili lipoprotein
921	 34.80	0	987617..988432	+	271	89256369	-	FTL_1030	-	ribosomal large subunit pseudouridine synthase B
922	 22.54	-2	988432..988857	+	141	89256370	-	FTL_1031	-	hypothetical protein
923	 26.30	-1	988835..989275	+	146	89256371	-	FTL_1032	-	ribosomal-protein-alanine acetyltransferase
924	 33.23	0	992306..993259	+	317	89256372	-	FTL_1034	-	sulfate adenylate transferase subunit 1
925	 31.39	0	993256..993717	+	153	89256373	-	FTL_1035	-	sulfate adenylyltransferase.
926	 30.52	0	993877..994338	+	153	89256374	-	FTL_1036	-	adenylylsulfate kinase, fragment
927	 25.57	-2	994763..995329	+	188	89256375	-	FTL_1037	-	hypothetical protein
928	 28.42	-1	995381..995746	+	121	89256376	-	FTL_1038	-	hypothetical protein
929	 24.52	-2	996413..997036	+	207	89256377	-	FTL_1039	-	hypothetical protein
930	 30.79	0	997117..997548	+	143	89256378	-	FTL_1040	-	hypothetical protein
931	 31.80	0	997638..998615	+	325	89256379	-	FTL_1041	-	octaprenyl-diphosphate synthase
932	 34.32	0	998633..999445	-	270	89256380	-	FTL_1042	-	FKBP-type peptidyl-prolyl cis-trans isomerase family protein
933	 31.22	0	999459..1000262	-	267	89256381	-	FTL_1043	-	hypothetical protein
934	 29.02	-1	1000255..1000671	-	138	89256382	-	FTL_1044	-	hypothetical protein
935	 34.31	0	1000687..1001298	-	203	89256383	-	FTL_1045	-	lipoprotein
936	 32.12	0	1001299..1002702	-	467	89256384	-	FTL_1046	-	D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein
937	 36.36	+1	1002958..1003155	+	65	89256385	rpsU	FTL_1047	-	30S ribosomal protein S21
938	 33.33	0	1003216..1003662	+	148	89256386	-	FTL_1048	-	hypothetical protein
939	 31.13	0	1003683..1005500	+	605	89256387	-	FTL_1049	-	DNA primase
940	 32.18	0	1005525..1007258	+	577	89256388	-	FTL_1050	-	RNA polymerase sigma-70 factor
941	 29.26	0	1007365..1008615	+	416	89256389	-	FTL_1051	-	NADH dehydrogenase
942	 31.71	0	1008728..1008973	-	81	89256390	-	FTL_1052	-	putative glycosidase
943	 36.67	+1	1008946..1009395	-	149	89256391	-	FTL_1053	-	putative alpha-xylosidase
944	 35.37	0	1009400..1009840	-	146	89256392	-	FTL_1054	-	putative alpha-xylosidase
945	 32.85	0	1012669..1013289	-	206	89256393	-	FTL_1058	-	lipoate-protein ligase B
946	 28.77	-1	1013299..1013583	-	94	89256394	-	FTL_1059	-	hypothetical protein
947	 35.96	+1	1013616..1014950	-	444	89256395	-	FTL_1060	-	D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein
948	 32.18	0	1015107..1015628	+	173	89256396	-	FTL_1061	-	inorganic pyrophosphatase
949	 31.69	0	1015719..1016267	+	182	89256397	-	FTL_1062	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
950	 29.67	0	1016275..1016901	+	208	89256398	-	FTL_1063	-	hypothetical protein
951	 29.74	0	1016888..1017721	+	277	89256399	-	FTL_1064	-	hypothetical protein
952	 37.98	+1	1017795..1018526	+	243	89256400	-	FTL_1065	-	ABC transporter, ATP-binding protein
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.