IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
783	 27.65	-1	850819..851082	+	87	89256231	-	FTL_0871	-	Na+/H+ antiporter
784	 29.34	0	851082..851582	+	166	89256232	-	FTL_0872	-	hypothetical protein
785	 35.74	0	852433..853638	+	401	89256233	ispG	FTL_0875	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
786	 32.77	0	853653..854360	+	235	89256234	-	FTL_0876	-	hypothetical protein
787	 34.62	0	854379..856172	+	597	89256235	-	FTL_0877	-	peptidase, M24 family protein
788	 32.49	0	856270..857334	+	354	89256236	-	FTL_0878	-	DNA/RNA endonuclease family protein
789	 29.17	0	857325..858188	-	287	89256237	-	FTL_0879	-	beta-lactamase
790	 27.23	-1	858617..859567	+	316	89256238	-	FTL_0880	-	hypothetical protein
791	 24.28	-2	859863..860138	-	91	89256239	-	FTL_0881	-	hypothetical protein
792	 32.86	0	860384..861874	-	496	89256240	-	FTL_0882	-	apolipoprotein N-acyltransferase
793	 30.25	0	861874..862716	-	280	89256241	-	FTL_0883	-	metal ion transporter protein
794	 33.72	0	862706..863227	-	173	89256242	-	FTL_0884	-	hypothetical protein
795	 36.48	+1	863187..864170	-	327	89256243	-	FTL_0885	-	phoH-like protein
796	 35.36	0	864174..865502	-	442	89256244	-	FTL_0886	-	hypothetical protein
797	 34.96	0	865725..866399	+	224	89256245	-	FTL_0887	-	o-methyltransferase family protein
798	 28.47	-1	867008..867151	+	47	89256246	-	FTL_0889	-	hypothetical protein
799	 34.01	0	867167..867760	+	197	89256247	-	FTL_0890	-	thymidine kinase
800	 34.24	0	868423..869739	+	438	89256248	tig	FTL_0891	-	trigger factor
801	 34.32	0	869765..870370	+	201	89256249	-	FTL_0892	-	ATP-dependent Clp protease subunit P
802	 32.38	0	870394..871647	+	417	89256250	clpX	FTL_0893	-	ATP-dependent protease ATP-binding subunit
803	 34.71	0	871672..873996	+	774	89256251	-	FTL_0894	-	DNA-binding, ATP-dependent protease La
804	 36.63	+1	874083..874355	+	90	89256252	-	FTL_0895	-	histone-like protein HU form B
805	 28.23	-1	874468..875898	+	476	89256253	-	FTL_0896	-	hypothetical protein
806	 33.01	0	875899..876825	+	308	89256254	-	FTL_0897	-	tRNA delta(2)-isopentenylpyrophosphate transferase
807	 30.91	0	876936..877265	+	109	89256255	-	FTL_0898	-	host factor I for bacteriophage Q beta replication
808	 33.64	0	877317..878624	+	435	89256256	-	FTL_0899	-	protease, GTP-binding subunit
809	 32.22	0	878635..878994	-	119	89256257	-	FTL_0900	-	monooxygenase, putative
810	 30.41	0	879067..879648	-	193	89256258	-	FTL_0901	-	monooxygenase family protein
811	 37.10	+1	879627..879812	-	61	89256259	-	FTL_0902	-	oxidoreductase
812	 33.71	0	879997..881064	+	355	89256260	-	FTL_0903	-	SPFH domain-containing protein/band 7 family protein
813	 33.44	0	881066..881992	+	308	89256261	-	FTL_0904	-	SPFH domain-containing protein/band 7 family protein
814	 34.98	0	881993..882478	+	161	89256262	-	FTL_0905	-	low molecular weight (LMW) phosphotyrosine protein phosphatase
815	 32.49	0	882475..883068	+	197	89256263	-	FTL_0906	-	GTPase EngB
816	 33.67	0	884563..884856	+	97	89256264	-	FTL_0909	-	hypothetical protein
817	 33.33	0	884898..885008	+	36	89256265	-	FTL_0910	-	hypothetical protein
818	 29.25	0	888117..888434	+	105	89256266	-	FTL_0915	-	acetolactate synthase, small subunit
819	 36.88	+1	888462..889505	+	347	89256267	-	FTL_0916	-	ketol-acid reductoisomerase
820	 30.27	0	889628..893053	-	1141	89256268	-	FTL_0917	-	transcription-repair coupling factor
821	 33.48	0	893098..893784	-	228	89256269	-	FTL_0918	-	hypothetical protein
822	 25.71	-1	893900..895159	-	419	89256270	-	FTL_0919	-	hypothetical protein
823	 31.25	0	895159..895590	-	143	89256271	-	FTL_0920	-	hypothetical protein
824	 33.33	0	895587..896225	-	212	89256272	-	FTL_0921	-	endonuclease III
825	 33.02	0	896218..896847	-	209	89256273	-	FTL_0922	-	Iron-sulfur cluster-binding protein
826	 30.08	0	896849..897493	-	214	89256274	-	FTL_0923	-	glutaredoxin 2
827	 27.46	-1	897576..898001	+	141	89256275	-	FTL_0924	-	proton-dependent oligopeptide transporter
828	 28.50	-1	897902..899122	+	406	89256276	-	FTL_0925	-	proton-dependent oligopeptide transport (POT) family protein
829	 32.53	0	899125..899625	-	166	89256277	-	FTL_0926	-	Ferritin-like protein
830	 34.96	0	899831..900814	+	327	89256278	-	FTL_0927	-	lipoyl synthase
831	 36.36	+1	900844..901503	+	219	89256279	-	FTL_0928	-	isoprenoid biosynthesis protein
832	 37.48	+1	901519..902265	+	248	89256280	-	FTL_0929	-	hypothetical protein
833	 37.02	+1	902362..902877	+	171	89256281	-	FTL_0930	-	holliday junction endodeoxyribonuclease
834	 30.65	0	902959..904149	+	396	89256282	-	FTL_0931	-	major facilitator transporter
835	 33.33	0	904162..904812	+	216	89256283	-	FTL_0932	-	holliday junction DNA helicase, subunit A
836	 30.16	0	904838..906253	+	471	89256284	-	FTL_0933	-	DNA recombination protein RmuC family protein
837	 32.44	0	906432..906881	+	149	89256285	-	FTL_0934	-	hypothetical protein
838	 34.01	0	906903..907199	-	98	89256286	-	FTL_0935	-	hypothetical protein
839	 34.50	0	907235..907576	-	113	89256287	-	FTL_0936	-	hypothetical protein
840	 28.54	-1	907855..908667	+	270	89256288	-	FTL_0937	-	hypothetical protein
841	 28.41	-1	908654..909790	-	378	89256289	-	FTL_0938	-	histidine decarboxylase
842	 29.90	0	909805..910503	-	232	89256290	-	FTL_0939	-	aldolase/adducin class II family protein
843	 29.21	0	910594..911175	-	193	89256291	-	FTL_0940	-	methylpurine-DNA glycosylase family protein
844	 30.95	0	911303..911806	+	167	89256292	-	FTL_0941	-	hypothetical protein
845	 28.91	-1	911806..912438	+	210	89256293	-	FTL_0942	-	nicotinamide mononucleotide transport (NMT) family protein
846	 32.40	0	912557..913732	+	391	89256294	-	FTL_0943	-	Sodium/hydrogen exchanger family protein
847	 27.31	-1	914065..914529	-	154	89256295	-	FTL_0945	-	hypothetical protein
848	 30.63	0	914886..915884	+	332	89256296	-	FTL_0946	-	major facilitator transporter
849	 34.09	0	917404..918330	-	308	89256297	-	FTL_0948	-	hypothetical protein
850	 36.64	+1	918621..919589	+	322	89256298	-	FTL_0949	-	ribose-phosphate pyrophosphokinase
851	 35.74	0	919689..919979	+	96	89256299	-	FTL_0950	-	50S ribosomal protein L25
852	 30.56	0	920075..921334	+	419	89256300	-	FTL_0951	-	hypothetical protein
853	 22.45	-2	921539..921685	-	48	89256301	-	FTL_0952	-	hypothetical protein
854	 26.85	-1	921901..922347	-	148	89256302	-	FTL_0953	-	hypothetical protein
855	 28.26	-1	922930..923205	-	91	89256303	-	FTL_0954	-	hypothetical protein
856	 34.71	0	923220..924311	-	363	89256304	-	FTL_0955	-	translation-associated GTPase
857	 32.47	0	924330..924905	-	191	89256305	-	FTL_0956	-	peptidyl-tRNA hydrolase
858	 31.07	0	924898..925782	-	294	89256306	-	FTL_0957	-	Beta-lactamase class A
859	 32.03	0	925791..926636	-	281	89256307	-	FTL_0958	-	hypothetical protein
860	 32.11	0	926676..927494	-	272	89256308	-	FTL_0959	-	Type IV pili leader peptidase and methylase.
861	 34.33	0	927498..928898	-	466	89256309	-	FTL_0960	-	soluble pyridine nucleotide transhydrogenase
862	 26.06	-1	929167..929853	-	228	89256310	-	FTL_0961	-	potassium channel protein
863	 28.21	-1	929877..930149	-	90	89256311	-	FTL_0962	-	hypothetical protein
864	 31.62	0	930229..931686	-	485	89256312	-	FTL_0963	-	proton-dependent oligopeptide transport (POT) family protein
865	 35.38	0	931784..933151	-	455	89256313	hslU	FTL_0964	-	ATP-dependent protease ATP-binding subunit
866	 34.42	0	933159..933710	-	183	89256314	-	FTL_0965	-	ATP-dependent protease peptidase subunit
867	 28.67	-1	933902..934651	+	249	89256315	-	FTL_0966	-	hypothetical protein
868	 29.13	0	934654..935556	-	300	89256316	-	FTL_0967	-	lipoate-protein ligase A
869	 34.51	0	935670..936860	+	396	89256317	-	FTL_0968	-	tyrosyl-tRNA synthetase
870	 31.56	0	937264..938144	-	293	89256318	isftu1	FTL_0969	-	transposase
871	 32.39	0	938212..939381	+	389	89256319	-	FTL_0970	-	L-lactate dehydrogenase
872	 32.75	0	939821..941200	+	459	89256320	-	FTL_0971	-	FAD linked oxidase
873	 31.68	0	943905..944750	+	281	89256321	-	FTL_0974	-	50S ribosomal protein L11, methyltransferase
874	 37.40	+1	944740..945723	+	327	89256322	-	FTL_0975	-	Nif3 family protein
875	 31.01	0	945953..948280	+	775	89256323	-	FTL_0976	-	hypothetical protein
876	 29.20	0	948522..948908	+	128	89256324	-	FTL_0977	-	hypothetical protein
877	 25.43	-2	948955..949245	+	96	89256325	-	FTL_0978	-	hypothetical protein
878	 23.49	-2	949297..949611	+	104	89256326	-	FTL_0979	-	hypothetical protein
879	 27.58	-1	949617..951023	+	468	89256327	-	FTL_0980	-	hypothetical protein
880	 33.33	0	951043..952092	-	349	89256328	-	FTL_0981	-	DNA polymerase IV, devoid of proofreading,damage inducible protein P
881	 32.01	0	952099..952701	-	200	89256329	-	FTL_0982	-	DJ-1/PfpI family protein
882	 35.04	0	953855..955087	-	410	89256330	-	FTL_0984	-	bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.