IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
751	 33.50	0	821559..822173	-	204	89256199	-	FTL_0839	-	hypothetical protein
752	 37.13	+1	822809..823150	+	113	89256200	-	FTL_0840	-	hypothetical protein
753	 39.81	+2	823141..823572	+	143	89256201	-	FTL_0841	-	lipoprotein
754	 31.08	0	824028..824249	-	73	89256202	-	FTL_0842	-	transposase
755	 37.14	+1	824555..825658	+	367	89256203	-	FTL_0843	-	queuine tRNA-ribosyltransferase.
756	 28.88	-1	825879..826484	-	201	89256204	-	FTL_0844	-	LysR transcriptional regulator family protein
757	 28.43	-1	826646..827461	+	271	89256205	-	FTL_0845	-	hypothetical protein
758	 35.08	0	827533..828105	+	190	89256206	-	FTL_0846	-	isochorismatase hydrolase family protein
759	 34.45	0	828660..829016	+	118	89256207	-	FTL_0847	-	preprotein translocase family protein
760	 35.19	0	829073..831010	+	645	89256208	secD	FTL_0848	-	preprotein translocase subunit SecD
761	 32.80	0	831029..831973	+	314	89256209	secF	FTL_0849	-	preprotein translocase subunit SecF
762	 32.58	0	832005..832535	+	176	89256210	-	FTL_0850	-	hypothetical protein
763	 35.27	0	832559..833437	+	292	89256211	-	FTL_0851	-	RNA polymerase factor sigma-32
764	 36.54	+1	833528..834805	+	425	89256212	-	FTL_0852	-	3-phosphoshikimate 1-carboxyvinyltransferase
765	 29.44	0	834808..835398	+	196	89256213	-	FTL_0853	-	hypothetical protein
766	 37.04	+1	835373..835831	+	152	89256214	-	FTL_0854	-	ribonuclease H
767	 33.53	0	835833..836870	+	345	89256215	-	FTL_0855	-	L-asparaginase
768	 34.93	0	836941..837627	+	228	89256216	-	FTL_0856	-	carbonic anhydrase
769	 24.59	-2	837914..838519	-	201	89256217	-	FTL_0857	-	hypothetical protein
770	 31.16	0	838583..839455	-	290	89256218	-	FTL_0858	-	hypothetical protein
771	 34.68	0	839464..839685	-	73	89256219	-	FTL_0859	-	rubredoxin
772	 31.07	0	839720..840337	-	205	89256220	-	FTL_0860	-	hypothetical protein
773	 29.38	0	840640..841272	+	210	89256221	isftu2	FTL_0861	-	transposase
774	 32.04	0	841307..842701	+	464	89256222	-	FTL_0862	-	hypothetical protein
775	 33.02	0	842733..844007	-	424	89256223	-	FTL_0863	-	Sodium-dicarboxylate symporter family protein
776	 34.01	0	844209..845237	+	342	89256224	-	FTL_0864	-	SIS domain-containing protein
777	 32.61	0	845289..846665	+	458	89256225	-	FTL_0865	-	major facilitator transporter
778	 32.69	0	847053..847361	+	102	89256226	-	FTL_0866	-	IS1 transposase
779	 31.07	0	847543..849000	-	485	89256227	-	FTL_0867	-	hypothetical protein
780	 29.09	-1	849036..849671	-	211	89256228	isftu2	FTL_0868	-	transposase
781	 30.00	0	850138..850377	+	79	89256229	-	FTL_0869	-	hypothetical protein
782	 30.56	0	850437..850616	+	59	89256230	-	FTL_0870	-	hypothetical protein
783	 27.65	-1	850819..851082	+	87	89256231	-	FTL_0871	-	Na+/H+ antiporter
784	 29.34	0	851082..851582	+	166	89256232	-	FTL_0872	-	hypothetical protein
785	 35.74	0	852433..853638	+	401	89256233	ispG	FTL_0875	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
786	 32.77	0	853653..854360	+	235	89256234	-	FTL_0876	-	hypothetical protein
787	 34.62	0	854379..856172	+	597	89256235	-	FTL_0877	-	peptidase, M24 family protein
788	 32.49	0	856270..857334	+	354	89256236	-	FTL_0878	-	DNA/RNA endonuclease family protein
789	 29.17	0	857325..858188	-	287	89256237	-	FTL_0879	-	beta-lactamase
790	 27.23	-1	858617..859567	+	316	89256238	-	FTL_0880	-	hypothetical protein
791	 24.28	-2	859863..860138	-	91	89256239	-	FTL_0881	-	hypothetical protein
792	 32.86	0	860384..861874	-	496	89256240	-	FTL_0882	-	apolipoprotein N-acyltransferase
793	 30.25	0	861874..862716	-	280	89256241	-	FTL_0883	-	metal ion transporter protein
794	 33.72	0	862706..863227	-	173	89256242	-	FTL_0884	-	hypothetical protein
795	 36.48	+1	863187..864170	-	327	89256243	-	FTL_0885	-	phoH-like protein
796	 35.36	0	864174..865502	-	442	89256244	-	FTL_0886	-	hypothetical protein
797	 34.96	0	865725..866399	+	224	89256245	-	FTL_0887	-	o-methyltransferase family protein
798	 28.47	-1	867008..867151	+	47	89256246	-	FTL_0889	-	hypothetical protein
799	 34.01	0	867167..867760	+	197	89256247	-	FTL_0890	-	thymidine kinase
800	 34.24	0	868423..869739	+	438	89256248	tig	FTL_0891	-	trigger factor
801	 34.32	0	869765..870370	+	201	89256249	-	FTL_0892	-	ATP-dependent Clp protease subunit P
802	 32.38	0	870394..871647	+	417	89256250	clpX	FTL_0893	-	ATP-dependent protease ATP-binding subunit
803	 34.71	0	871672..873996	+	774	89256251	-	FTL_0894	-	DNA-binding, ATP-dependent protease La
804	 36.63	+1	874083..874355	+	90	89256252	-	FTL_0895	-	histone-like protein HU form B
805	 28.23	-1	874468..875898	+	476	89256253	-	FTL_0896	-	hypothetical protein
806	 33.01	0	875899..876825	+	308	89256254	-	FTL_0897	-	tRNA delta(2)-isopentenylpyrophosphate transferase
807	 30.91	0	876936..877265	+	109	89256255	-	FTL_0898	-	host factor I for bacteriophage Q beta replication
808	 33.64	0	877317..878624	+	435	89256256	-	FTL_0899	-	protease, GTP-binding subunit
809	 32.22	0	878635..878994	-	119	89256257	-	FTL_0900	-	monooxygenase, putative
810	 30.41	0	879067..879648	-	193	89256258	-	FTL_0901	-	monooxygenase family protein
811	 37.10	+1	879627..879812	-	61	89256259	-	FTL_0902	-	oxidoreductase
812	 33.71	0	879997..881064	+	355	89256260	-	FTL_0903	-	SPFH domain-containing protein/band 7 family protein
813	 33.44	0	881066..881992	+	308	89256261	-	FTL_0904	-	SPFH domain-containing protein/band 7 family protein
814	 34.98	0	881993..882478	+	161	89256262	-	FTL_0905	-	low molecular weight (LMW) phosphotyrosine protein phosphatase
815	 32.49	0	882475..883068	+	197	89256263	-	FTL_0906	-	GTPase EngB
816	 33.67	0	884563..884856	+	97	89256264	-	FTL_0909	-	hypothetical protein
817	 33.33	0	884898..885008	+	36	89256265	-	FTL_0910	-	hypothetical protein
818	 29.25	0	888117..888434	+	105	89256266	-	FTL_0915	-	acetolactate synthase, small subunit
819	 36.88	+1	888462..889505	+	347	89256267	-	FTL_0916	-	ketol-acid reductoisomerase
820	 30.27	0	889628..893053	-	1141	89256268	-	FTL_0917	-	transcription-repair coupling factor
821	 33.48	0	893098..893784	-	228	89256269	-	FTL_0918	-	hypothetical protein
822	 25.71	-1	893900..895159	-	419	89256270	-	FTL_0919	-	hypothetical protein
823	 31.25	0	895159..895590	-	143	89256271	-	FTL_0920	-	hypothetical protein
824	 33.33	0	895587..896225	-	212	89256272	-	FTL_0921	-	endonuclease III
825	 33.02	0	896218..896847	-	209	89256273	-	FTL_0922	-	Iron-sulfur cluster-binding protein
826	 30.08	0	896849..897493	-	214	89256274	-	FTL_0923	-	glutaredoxin 2
827	 27.46	-1	897576..898001	+	141	89256275	-	FTL_0924	-	proton-dependent oligopeptide transporter
828	 28.50	-1	897902..899122	+	406	89256276	-	FTL_0925	-	proton-dependent oligopeptide transport (POT) family protein
829	 32.53	0	899125..899625	-	166	89256277	-	FTL_0926	-	Ferritin-like protein
830	 34.96	0	899831..900814	+	327	89256278	-	FTL_0927	-	lipoyl synthase
831	 36.36	+1	900844..901503	+	219	89256279	-	FTL_0928	-	isoprenoid biosynthesis protein
832	 37.48	+1	901519..902265	+	248	89256280	-	FTL_0929	-	hypothetical protein
833	 37.02	+1	902362..902877	+	171	89256281	-	FTL_0930	-	holliday junction endodeoxyribonuclease
834	 30.65	0	902959..904149	+	396	89256282	-	FTL_0931	-	major facilitator transporter
835	 33.33	0	904162..904812	+	216	89256283	-	FTL_0932	-	holliday junction DNA helicase, subunit A
836	 30.16	0	904838..906253	+	471	89256284	-	FTL_0933	-	DNA recombination protein RmuC family protein
837	 32.44	0	906432..906881	+	149	89256285	-	FTL_0934	-	hypothetical protein
838	 34.01	0	906903..907199	-	98	89256286	-	FTL_0935	-	hypothetical protein
839	 34.50	0	907235..907576	-	113	89256287	-	FTL_0936	-	hypothetical protein
840	 28.54	-1	907855..908667	+	270	89256288	-	FTL_0937	-	hypothetical protein
841	 28.41	-1	908654..909790	-	378	89256289	-	FTL_0938	-	histidine decarboxylase
842	 29.90	0	909805..910503	-	232	89256290	-	FTL_0939	-	aldolase/adducin class II family protein
843	 29.21	0	910594..911175	-	193	89256291	-	FTL_0940	-	methylpurine-DNA glycosylase family protein
844	 30.95	0	911303..911806	+	167	89256292	-	FTL_0941	-	hypothetical protein
845	 28.91	-1	911806..912438	+	210	89256293	-	FTL_0942	-	nicotinamide mononucleotide transport (NMT) family protein
846	 32.40	0	912557..913732	+	391	89256294	-	FTL_0943	-	Sodium/hydrogen exchanger family protein
847	 27.31	-1	914065..914529	-	154	89256295	-	FTL_0945	-	hypothetical protein
848	 30.63	0	914886..915884	+	332	89256296	-	FTL_0946	-	major facilitator transporter
849	 34.09	0	917404..918330	-	308	89256297	-	FTL_0948	-	hypothetical protein
850	 36.64	+1	918621..919589	+	322	89256298	-	FTL_0949	-	ribose-phosphate pyrophosphokinase
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.