IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
31	 38.38	+1	34297..35643	+	448	89255480	-	FTL_0033	-	dihydroorotase
32	 25.94	-1	35671..36711	-	346	89255481	-	FTL_0034	-	hypothetical protein
33	 35.13	0	37248..37526	+	92	89255482	-	FTL_0035	-	hypothetical protein
34	 32.61	0	37915..38466	+	183	89255483	-	FTL_0036	-	hypothetical protein
35	 31.62	0	38582..39634	-	350	89255484	-	FTL_0037	-	hypothetical protein
36	 28.16	-1	39621..40586	-	321	89255485	-	FTL_0038	-	HlyD family secretion protein
37	 28.68	-1	40675..41082	-	135	89255486	-	FTL_0039	-	hypothetical protein
38	 31.49	0	41208..42077	+	289	89255487	-	FTL_0040	-	LysR family transcriptional regulator
39	 34.95	0	42078..42449	-	123	89255488	-	FTL_0041	-	hypothetical protein
40	 29.51	0	42739..43365	-	208	89255489	isftu2	FTL_0042	-	transposase
41	 31.51	0	43704..44252	+	182	89255490	-	FTL_0043	-	chorismate mutase
42	 35.81	0	44307..47540	-	1077	89255491	-	FTL_0044	-	transglutaminase-like domain-containing protein
43	 35.23	0	47960..48592	+	210	89255492	-	FTL_0045	-	orotidine 5'-phosphate decarboxylase
44	 33.47	0	48594..49340	+	248	89255493	-	FTL_0046	-	diyroorotate dehydrogenase
45	 31.58	0	49699..49869	-	56	89255494	-	FTL_0047	-	hypothetical protein
46	 33.48	0	49873..50535	-	220	89255495	-	FTL_0048	-	prephenate dehydrogenase.
47	 31.28	0	50803..51240	-	145	89255496	-	FTL_0049	-	D-tyrosyl-tRNA deacylase
48	 30.57	0	51483..52169	-	228	89255497	-	FTL_0050	-	hypothetical protein
49	 34.84	0	52317..52715	-	132	89255498	-	FTL_0051	-	hypothetical protein
50	 29.07	-1	52734..53273	-	179	89255499	-	FTL_0052	-	hypothetical protein
51	 33.01	0	53270..54202	-	310	89255500	-	FTL_0053	-	Beta-fructofuranosidase
52	 31.56	0	54408..55288	-	293	89255501	isftu1	FTL_0054	-	transposase
53	 29.89	0	55312..55863	-	183	89255502	-	FTL_0055	-	hypothetical protein
54	 34.53	0	56134..56799	-	221	89255503	-	FTL_0056	-	NADH dehydrogenase
55	 33.77	0	57202..57894	+	230	89255504	-	FTL_0057	-	hypothetical protein
56	 33.17	0	57891..59096	-	401	89255505	-	FTL_0058	-	aromatic amino acid HAAP transporter
57	 31.55	0	59196..59813	+	205	89255506	-	FTL_0059	-	methyltransferase glucose-inhibited cell division protein
58	 33.33	0	59810..60478	+	222	89255507	-	FTL_0060	-	hypothetical protein
59	 31.86	0	60471..61355	-	294	89255508	-	FTL_0061	-	hypothetical protein
60	 30.69	0	61557..62048	-	163	89255509	-	FTL_0062	-	transcription regulator
61	 30.52	0	62556..63692	+	378	89255510	-	FTL_0063	-	major facilitator transporter
62	 35.01	0	66214..66810	+	198	89255511	-	FTL_0068	-	phosphoheptose isomerase
63	 29.97	0	66818..67174	+	118	89255512	-	FTL_0069	-	outer membrane lipoprotein
64	 33.70	0	67248..67520	-	90	89255513	rpsT	FTL_0070	-	30S ribosomal protein S20
65	 37.65	+1	67790..69574	+	594	89255514	-	FTL_0071	-	GTP-binding protein LepA
66	 36.57	+1	69588..70667	+	359	89255515	-	FTL_0072	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
67	 33.94	0	70687..71679	-	330	89255516	-	FTL_0073	-	hypothetical protein
68	 33.33	0	71761..72279	-	172	89255517	-	FTL_0074	-	peptide deformylase
69	 35.36	0	72282..72725	-	147	89255518	-	FTL_0075	-	riboflavin synthase beta subunit (6,7-dimethl-8-ribityllumazine synthase)
70	 35.64	0	72735..73946	-	403	89255519	-	FTL_0076	-	riboflavin biosynthesis protein ribA/GTP-cyclohydrolase II
71	 31.02	0	73939..74544	-	201	89255520	-	FTL_0077	-	riboflavin synthase subunit alpha
72	 34.08	0	74537..75604	-	355	89255521	-	FTL_0078	-	riboflavin biosynthesis protein ribD
73	 29.51	0	75931..76557	-	208	89255522	isftu2	FTL_0079	-	transposase
74	 32.17	0	76775..77604	-	276	89255523	isftu1	FTL_0080	-	transposase
75	 32.36	0	78577..79092	-	171	89255524	-	FTL_0082	-	B-type cytochrome
76	 32.73	0	80142..81293	+	383	89255525	-	FTL_0085	-	Na(+)/H(+) antiporter 1
77	 29.58	0	81358..82077	+	239	89255526	-	FTL_0086	-	hypothetical protein
78	 34.41	0	82083..82823	-	246	89255527	-	FTL_0087	-	acetyltransferase protein
79	 33.60	0	82837..83589	-	250	89255528	-	FTL_0088	-	acetyltransferase protein
80	 37.04	+1	83752..84075	-	107	89255529	-	FTL_0089	-	ferredoxin
81	 31.15	0	84308..84949	+	213	89255530	-	FTL_0090	-	hypothetical protein
82	 34.05	0	85149..85565	+	138	89255531	-	FTL_0091	-	O-methyltransferase
83	 35.49	0	85682..86842	-	386	89255532	purT	FTL_0092	-	phosphoribosylglycinamide formyltransferase 2
84	 36.11	+1	86896..89088	-	730	89255533	-	FTL_0093	-	chitinase
85	 35.85	0	89339..91918	-	859	89255534	-	FTL_0094	-	ClpB protein
86	 29.66	0	92864..93217	+	117	89255535	-	FTL_0097	-	hypothetical protein
87	 35.43	0	93272..94081	-	269	89255536	trpA	FTL_0098	-	tryptophan synthase subunit alpha
88	 39.46	+2	94081..95271	-	396	89255537	-	FTL_0099	-	tryptophan synthase subunit beta
89	 31.14	0	95358..96863	-	501	89255538	-	FTL_0100	-	carboxypeptidase,fragment
90	 36.24	+1	96799..97863	-	354	89255539	-	FTL_0101	-	voltage-gated ClC-type chloride channel clcA
91	 33.33	0	97893..98216	-	107	89255540	-	FTL_0102	-	hypothetical protein
92	 29.47	0	98400..98684	-	94	89255541	-	FTL_0103	-	hypothetical protein
93	 32.85	0	98687..99097	-	136	89255542	-	FTL_0104	-	hypothetical protein
94	 31.55	0	99118..99510	-	130	89255543	-	FTL_0105	-	hypothetical protein
95	 31.44	0	100311..101191	+	293	89255544	isftu1	FTL_0107	-	transposase
96	 29.67	0	101192..102064	-	290	89255545	-	FTL_0108	-	hypothetical protein
97	 30.10	0	102157..102558	+	133	89255546	-	FTL_0109	-	hypothetical protein
98	 29.90	0	102568..102771	+	67	89255547	-	FTL_0110	-	hypothetical protein
99	 32.25	0	102852..103406	+	184	89255548	-	FTL_0111	-	intracellular growth locus, subunit A
100	 31.03	0	103420..104940	+	506	89255549	-	FTL_0112	-	intracellular growth locus, subunit B
101	 34.60	0	104957..105586	+	209	89255550	-	FTL_0113	-	intracellular growth locus, subunit C
102	 29.24	0	105607..106803	+	398	89255551	-	FTL_0114	-	intracellular growth locus, subunit D
103	 24.48	-2	106810..107385	-	191	89255552	-	FTL_0115	-	hypothetical protein
104	 26.39	-1	107403..111389	-	1328	89255553	-	FTL_0116	-	hypothetical protein
105	 23.51	-2	111429..112202	-	257	89255554	-	FTL_0117	-	hypothetical protein
106	 26.13	-1	112168..113319	-	383	89255555	-	FTL_0118	-	hypothetical protein
107	 27.88	-1	113341..113964	-	207	89255556	-	FTL_0119	-	hypothetical protein
108	 26.14	-1	113977..115407	-	476	89255557	-	FTL_0120	-	hypothetical protein
109	 33.14	0	115420..115941	-	173	89255558	-	FTL_0121	-	hypothetical protein
110	 23.84	-2	116009..117673	-	554	89255559	-	FTL_0122	-	hypothetical protein
111	 30.10	0	117678..118172	-	164	89255560	-	FTL_0123	-	hypothetical protein
112	 23.81	-2	118185..118562	-	125	89255561	-	FTL_0124	-	hypothetical protein
113	 25.99	-1	118552..121833	-	1093	89255562	-	FTL_0125	-	hypothetical protein
114	 27.00	-1	121838..124300	-	820	89255563	-	FTL_0126	-	hypothetical protein
115	 33.33	0	129871..130587	+	238	89255564	-	FTL_0127	-	formate dehydrogenase
116	 31.44	0	130645..131525	+	293	89255565	isftu1	FTL_0128	-	transposase
117	 35.78	0	131814..132632	-	272	89255566	-	FTL_0129	-	2-isopropylmalate synthase
118	 34.12	0	132640..132894	-	84	89255567	-	FTL_0130	-	isopropylmalate/homocitrate/citramalate synthase family protein
119	 33.56	0	132905..133792	-	295	89255568	-	FTL_0131	-	branched-chain amino acid aminotransferase protein (class IV)
120	 37.17	+1	134193..136826	-	877	89255569	-	FTL_0132	-	pyruvate phosphate dikinase
121	 33.47	0	137653..139896	-	747	89255570	-	FTL_0133	-	ferrous iron transport protein
122	 28.90	-1	139997..140470	-	157	89255571	-	FTL_0134	-	hypothetical protein
123	 31.56	0	140442..141322	-	293	89255572	isftu1	FTL_0135	-	transposase
124	 27.01	-1	141811..142443	-	210	89255573	-	FTL_0136	-	hypothetical protein
125	 27.97	-1	143094..144062	-	322	89255574	-	FTL_0137	-	lipopolysaccharide protein
126	 32.96	0	144251..146101	+	616	89255575	-	FTL_0138	-	ribonuclease II family protein
127	 33.18	0	146438..147106	+	222	89255576	-	FTL_0139	-	carboxylesterase/phospholipase family protein
128	 34.66	0	147103..148005	+	300	89255577	-	FTL_0140	-	hydroxymethylbilane synthase (porphobilinogen deaminase)
129	 32.44	0	148006..148341	+	111	89255578	-	FTL_0141	-	CrcB family protein
130	 32.11	0	148394..148801	+	135	89255579	-	FTL_0142	-	hypothetical protein
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.