IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
570	 32.31	0	613682..614461	+	259	89256018	-	FTL_0624	-	ABC transporter, membrane protein
571	 34.50	0	614465..615409	-	314	89256019	-	FTL_0625	-	glycosyl transferase
572	 34.57	0	615600..616490	+	296	89256020	-	FTL_0626	-	inorganic phosphate/ATP-NAD kinase
573	 30.19	0	616487..617122	-	211	89256021	-	FTL_0627	-	threonine efflux protein
574	 31.56	0	619191..620071	-	293	89256022	isftu1	FTL_0631	-	transposase
575	 36.67	+1	620245..620544	+	99	89256023	-	FTL_0632	-	ArsR family transcriptional regulator
576	 34.10	0	620610..621128	+	172	89256024	-	FTL_0633	-	hypothetical protein
577	 41.27	+2	621153..621278	+	41	89256025	-	FTL_0634	-	NADH oxidase
578	 34.46	0	621339..621959	+	206	89256026	-	FTL_0635	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
579	 34.17	0	622009..622845	+	278	89256027	-	FTL_0636	-	NADH oxidase
580	 35.66	0	622890..623576	+	228	89256028	-	FTL_0637	-	hypothetical protein
581	 34.67	0	623578..624327	+	249	89256029	-	FTL_0638	-	hypothetical protein
582	 29.72	0	624320..624928	-	202	89256030	-	FTL_0639	-	oxidoreductase
583	 32.67	0	624980..625429	-	149	89256031	-	FTL_0640	-	hypothetical protein
584	 34.65	0	625660..626115	-	151	89256032	-	FTL_0641	-	hypothetical protein
585	 32.93	0	626176..626673	-	165	89256033	-	FTL_0642	-	lipoprotein
586	 33.10	0	626753..627178	+	141	89256034	-	FTL_0643	-	N utilisation substance protein B
587	 33.46	0	627162..627932	-	256	89256035	-	FTL_0644	-	carbon-nitrogen hydrolase
588	 32.61	0	628101..628514	+	137	89256036	-	FTL_0645	-	lipoprotein
589	 29.01	-1	628660..629469	-	269	89256037	-	FTL_0646	-	hypothetical protein
590	 27.74	-1	629577..630059	-	160	89256038	-	FTL_0647	-	hypothetical protein
591	 34.60	0	630059..630688	-	209	89256039	-	FTL_0648	-	aminotransferase
592	 34.58	0	630712..631191	-	159	89256040	-	FTL_0649	-	aspartate/tyrosine/aromatic aminotransferase family protein
593	 35.69	0	631337..633034	-	565	89256041	-	FTL_0650	-	prolyl-tRNA synthetase
594	 28.33	-1	633888..634187	-	99	89256042	-	FTL_0651	-	transposase
595	 31.28	0	635603..636139	-	178	89256043	-	FTL_0652	-	hypothetical protein
596	 31.89	0	636846..637262	+	138	89256044	-	FTL_0653	-	hypothetical protein
597	 29.07	-1	637263..638012	+	249	89256045	-	FTL_0654	-	uroporphyrinogen III synthase
598	 30.66	0	637978..639063	+	361	89256046	-	FTL_0655	-	hypothetical protein
599	 29.79	0	639060..640217	+	385	89256047	-	FTL_0656	-	hypothetical protein
600	 30.83	0	640231..640989	+	252	89256048	-	FTL_0657	-	hydroxyacylglutathione hydrolase
601	 33.33	0	641067..641774	-	235	89256049	-	FTL_0659	-	cell division protein
602	 29.33	0	641883..642107	+	74	89256050	-	FTL_0660	-	ferrous iron transport protein A
603	 31.44	0	642124..643758	+	544	89256051	-	FTL_0661	-	hypothetical protein
604	 32.11	0	644330..644983	-	217	89256052	-	FTL_0662	-	prophage repressor protein
605	 25.20	-2	645152..645520	+	122	89256053	-	FTL_0663	-	hypothetical protein
606	 27.49	-1	645551..646423	-	290	89256054	-	FTL_0664	-	hypothetical protein
607	 37.68	+1	646600..648186	+	528	89256055	-	FTL_0665	-	hypothetical protein
608	 31.76	0	648263..651502	+	1079	89256056	-	FTL_0666	-	exodeoxyribonuclease V gamma chain
609	 33.52	0	651486..652016	+	176	89256057	-	FTL_0667	-	hypothetical protein
610	 30.68	0	652159..653589	+	476	89256058	-	FTL_0668	-	ATP-dependent DNA helicase
611	 32.16	0	653661..657314	+	1217	89256059	-	FTL_0669	-	exodeoxyribonuclease V beta chain
612	 31.32	0	657307..659148	+	613	89256060	-	FTL_0670	-	exodeoxyribonuclease V, alpha subunit
613	 34.50	0	659157..659927	-	256	89256061	-	FTL_0671	-	pantothenate kinase
614	 34.06	0	659991..660266	-	91	89256062	-	FTL_0672	-	aspartate alpha-decarboxylase
615	 30.53	0	660260..661045	-	261	89256063	-	FTL_0673	-	pantoate-beta-alanine ligase
616	 33.80	0	661032..661883	-	283	89256064	-	FTL_0674	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
617	 32.49	0	661831..662544	-	237	89256065	-	FTL_0675	-	hypothetical protein
618	 35.20	0	662852..664888	+	678	89256066	-	FTL_0676	-	DNA ligase
619	 30.69	0	664885..665262	+	125	89256067	-	FTL_0677	-	hypothetical protein
620	 31.56	0	665240..666120	-	293	89256068	isftu1	FTL_0678	-	transposase
621	 32.84	0	666344..667150	-	268	89256069	-	FTL_0679	-	polyamine transporter, subunit I, ABC transporter, membrane protein
622	 32.99	0	667164..668045	-	293	89256070	-	FTL_0680	-	polyamine transporter, subunit H, ABC transporter, membrane protein
623	 34.67	0	668045..669166	-	373	89256071	-	FTL_0681	-	polyamine transporter, ABC transporter,ATP-binding protein
624	 31.56	0	669449..670329	-	293	89256072	isftu1	FTL_0682	-	transposase
625	 29.55	0	671099..671521	-	140	89256073	-	FTL_0684	-	hypothetical protein
626	 34.53	0	671625..672374	-	249	89256074	-	FTL_0685	-	NH(3)-dependent NAD(+) synthetase
627	 34.28	0	672503..673975	-	490	89256075	-	FTL_0686	-	outer membrane efflux protein
628	 33.24	0	673985..675007	-	340	89256076	-	FTL_0687	-	HlyD family secretion protein
629	 33.99	0	675029..676558	-	509	89256077	-	FTL_0688	-	major facilitator transporter
630	 37.20	+1	676723..677550	+	275	89256078	-	FTL_0689	-	transcriptional regulator araC family protein
631	 32.39	0	677538..679229	-	563	89256079	-	FTL_0690	-	Acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)
632	 33.60	0	679337..680818	-	493	89256080	-	FTL_0691	-	proton-dependent oligopeptide transport (POT) family protein
633	 26.75	-1	681054..681782	-	242	89256081	-	FTL_0692	-	hypothetical protein
634	 32.17	0	681853..682539	+	228	89256082	-	FTL_0693	-	hypothetical protein
635	 27.75	-1	682529..683227	-	232	89256083	-	FTL_0694	-	hypothetical protein
636	 28.51	-1	683232..683957	-	241	89256084	-	FTL_0695	-	cell entry (mce) related family protein
637	 32.02	0	683967..684728	-	253	89256085	-	FTL_0696	-	ABC transporter, ATP-binding protein
638	 31.34	0	684743..685843	-	366	89256086	-	FTL_0697	-	ABC transporter, membrane protein
639	 29.63	0	685918..686754	-	278	89256087	-	FTL_0698	-	hypothetical protein
640	 35.04	0	686708..687706	-	332	89256088	-	FTL_0699	-	ribosomal large subunit pseudouridine synthase D
641	 33.09	0	687794..688618	+	274	89256089	-	FTL_0700	-	lipoprotein
642	 36.27	+1	688726..690495	+	589	89256090	-	FTL_0701	-	FAD binding family protein
643	 32.65	0	690560..692017	-	485	89256091	-	FTL_0702	-	hypothetical protein
644	 36.84	+1	692295..693548	-	417	89256092	-	FTL_0703	-	serine hydroxymethyltransferase
645	 25.68	-2	693652..694200	+	182	89256093	-	FTL_0704	-	hypothetical protein
646	 25.24	-2	694215..695486	-	423	89256094	-	FTL_0705	-	hypothetical protein
647	 25.30	-2	695694..697025	+	443	89256095	-	FTL_0706	-	hypothetical protein
648	 28.73	-1	697051..697941	-	296	89256096	-	FTL_0707	-	glycosyl transferase family protein
649	 27.82	-1	697949..699037	-	362	89256097	-	FTL_0708	-	hypothetical protein
650	 32.86	0	699207..700271	+	354	89256098	-	FTL_0709	-	glycosyl transferases group 1 family protein
651	 31.13	0	700348..701301	-	317	89256099	-	FTL_0710	-	choloylglycine hydrolase family protein
652	 31.14	0	701797..702390	+	197	89256100	-	FTL_0711	-	proton-dependent oligopeptide transport (POT) family protein
653	 34.12	0	702481..702990	+	169	89256101	-	FTL_0712	-	hypothetical protein
654	 30.24	0	702998..704194	-	398	89256102	-	FTL_0713	-	PP-loop family protein
655	 33.90	0	704195..705430	-	411	89256103	-	FTL_0714	-	D-3-phosphoglycerate dehydrogenase
656	 34.30	0	705442..706266	-	274	89256104	thyA	FTL_0715	-	thymidylate synthase
657	 36.80	+1	706251..707057	-	268	89256105	-	FTL_0716	-	prolipoprotein diacylglyceryl transferase
658	 33.06	0	707072..709603	-	843	89256106	-	FTL_0717	-	ribonuclease E
659	 34.86	0	709853..711028	+	391	89256107	-	FTL_0718	-	cysteine desulfarase
660	 31.21	0	711021..711350	+	109	89256108	-	FTL_0719	-	hypothetical protein
661	 28.47	-1	711334..712032	+	232	89256109	-	FTL_0720	-	DNA repair protein recO
662	 32.10	0	712108..712755	-	215	89256110	-	FTL_0721	-	DedA family protein
663	 28.07	-1	712811..713437	-	208	89256111	-	FTL_0722	-	DedA family protein
664	 30.71	0	713444..713710	-	88	89256112	-	FTL_0723	-	hypothetical protein
665	 28.96	-1	713713..714261	-	182	89256113	-	FTL_0724	-	5-formyltetrahydroformate cycloligase family protein
666	 33.89	0	714701..715237	+	178	89256114	-	FTL_0725	-	hypothetical protein
667	 34.49	0	715246..716457	+	403	89256115	-	FTL_0726	-	2-octaprenyl-6-methoxyphenyl hydroxylase
668	 33.66	0	716447..717682	+	411	89256116	-	FTL_0727	-	monooxygenase family protein
669	 25.54	-2	717704..718165	+	153	89256117	-	FTL_0728	-	hypothetical protein
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.