IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
541	 29.05	-1	577532..578185	+	217	89255989	isftu2	FTL_0591	-	transposase
542	 33.22	0	578226..579962	+	578	89255990	-	FTL_0592	-	dTDP-glucose 4,6-dehydratase
543	 32.39	0	579955..580587	+	210	89255991	-	FTL_0593	-	galactosyl transferase
544	 29.55	0	580589..581380	+	263	89255992	-	FTL_0594	-	UDP-glucose 4-epimerase
545	 28.75	-1	581370..582461	+	363	89255993	-	FTL_0595	-	galacturonosyl transferase
546	 35.01	0	582479..583789	+	436	89255994	-	FTL_0596	-	UDP-glucose/GDP-mannose dehydrogenase
547	 33.54	0	583789..584760	+	323	89255995	-	FTL_0597	-	NAD dependent epimerase
548	 22.52	-2	584777..586006	+	409	89255996	-	FTL_0598	-	membrane protein/O-antigen protein
549	 26.25	-1	586003..587103	+	366	89255997	-	FTL_0599	-	glycosyl transferase
550	 31.85	0	587103..588989	+	628	89255998	-	FTL_0600	-	asparagine synthase
551	 30.66	0	588982..590064	+	360	89255999	-	FTL_0601	-	sugar transamine/perosamine synthetase
552	 28.37	-1	590061..590786	+	241	89256000	-	FTL_0602	-	hypothetical protein
553	 30.11	0	590791..592278	+	495	89256001	-	FTL_0603	-	O-antigen flippase
554	 29.15	0	592271..593131	+	286	89256002	-	FTL_0604	-	glycosyltransferase
555	 38.19	+1	593156..594040	+	294	89256003	-	FTL_0605	-	glucose-1-phosphate thymidylyltransferase
556	 33.43	0	594587..595603	+	338	89256004	-	FTL_0606	-	dTDP-D-glucose 4,6-dehydratase
557	 31.44	0	595748..596628	+	293	89256005	isftu1	FTL_0607	-	transposase
558	 36.32	+1	596881..598287	+	468	89256006	-	FTL_0608	-	mannose-1-phosphate guanyltransferase
559	 35.42	0	598318..599802	+	494	89256007	-	FTL_0609	-	phosphomannomutase
560	 39.67	+2	600895..602157	-	420	89256008	rho	FTL_0610	-	transcription termination factor Rho
561	 34.57	0	602200..602523	-	107	89256009	-	FTL_0611	-	thioredoxin
562	 34.84	0	602721..603647	+	308	89256010	-	FTL_0612	-	exopolyphosphatase
563	 29.69	0	603576..604262	-	228	89256011	isftu2	FTL_0613	-	transposase
564	 35.55	0	605084..605986	+	300	89256012	-	FTL_0615	-	AAA family ATPase
565	 32.60	0	606074..607027	+	317	89256013	-	FTL_0616	-	DNA-directed RNA polymerase subunit alpha
566	 29.02	-1	607646..608086	-	146	89256014	-	FTL_0617	-	hypothetical protein
567	 32.94	0	609798..610565	+	255	89256015	-	FTL_0620	-	deoxyribonuclease
568	 29.23	0	611800..612432	-	210	89256016	isftu2	FTL_0622	-	transposase
569	 32.14	0	612750..613673	+	307	89256017	-	FTL_0623	-	ABC transporter, ATP-binding protein
570	 32.31	0	613682..614461	+	259	89256018	-	FTL_0624	-	ABC transporter, membrane protein
571	 34.50	0	614465..615409	-	314	89256019	-	FTL_0625	-	glycosyl transferase
572	 34.57	0	615600..616490	+	296	89256020	-	FTL_0626	-	inorganic phosphate/ATP-NAD kinase
573	 30.19	0	616487..617122	-	211	89256021	-	FTL_0627	-	threonine efflux protein
574	 31.56	0	619191..620071	-	293	89256022	isftu1	FTL_0631	-	transposase
575	 36.67	+1	620245..620544	+	99	89256023	-	FTL_0632	-	ArsR family transcriptional regulator
576	 34.10	0	620610..621128	+	172	89256024	-	FTL_0633	-	hypothetical protein
577	 41.27	+2	621153..621278	+	41	89256025	-	FTL_0634	-	NADH oxidase
578	 34.46	0	621339..621959	+	206	89256026	-	FTL_0635	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
579	 34.17	0	622009..622845	+	278	89256027	-	FTL_0636	-	NADH oxidase
580	 35.66	0	622890..623576	+	228	89256028	-	FTL_0637	-	hypothetical protein
581	 34.67	0	623578..624327	+	249	89256029	-	FTL_0638	-	hypothetical protein
582	 29.72	0	624320..624928	-	202	89256030	-	FTL_0639	-	oxidoreductase
583	 32.67	0	624980..625429	-	149	89256031	-	FTL_0640	-	hypothetical protein
584	 34.65	0	625660..626115	-	151	89256032	-	FTL_0641	-	hypothetical protein
585	 32.93	0	626176..626673	-	165	89256033	-	FTL_0642	-	lipoprotein
586	 33.10	0	626753..627178	+	141	89256034	-	FTL_0643	-	N utilisation substance protein B
587	 33.46	0	627162..627932	-	256	89256035	-	FTL_0644	-	carbon-nitrogen hydrolase
588	 32.61	0	628101..628514	+	137	89256036	-	FTL_0645	-	lipoprotein
589	 29.01	-1	628660..629469	-	269	89256037	-	FTL_0646	-	hypothetical protein
590	 27.74	-1	629577..630059	-	160	89256038	-	FTL_0647	-	hypothetical protein
591	 34.60	0	630059..630688	-	209	89256039	-	FTL_0648	-	aminotransferase
592	 34.58	0	630712..631191	-	159	89256040	-	FTL_0649	-	aspartate/tyrosine/aromatic aminotransferase family protein
593	 35.69	0	631337..633034	-	565	89256041	-	FTL_0650	-	prolyl-tRNA synthetase
594	 28.33	-1	633888..634187	-	99	89256042	-	FTL_0651	-	transposase
595	 31.28	0	635603..636139	-	178	89256043	-	FTL_0652	-	hypothetical protein
596	 31.89	0	636846..637262	+	138	89256044	-	FTL_0653	-	hypothetical protein
597	 29.07	-1	637263..638012	+	249	89256045	-	FTL_0654	-	uroporphyrinogen III synthase
598	 30.66	0	637978..639063	+	361	89256046	-	FTL_0655	-	hypothetical protein
599	 29.79	0	639060..640217	+	385	89256047	-	FTL_0656	-	hypothetical protein
600	 30.83	0	640231..640989	+	252	89256048	-	FTL_0657	-	hydroxyacylglutathione hydrolase
601	 33.33	0	641067..641774	-	235	89256049	-	FTL_0659	-	cell division protein
602	 29.33	0	641883..642107	+	74	89256050	-	FTL_0660	-	ferrous iron transport protein A
603	 31.44	0	642124..643758	+	544	89256051	-	FTL_0661	-	hypothetical protein
604	 32.11	0	644330..644983	-	217	89256052	-	FTL_0662	-	prophage repressor protein
605	 25.20	-2	645152..645520	+	122	89256053	-	FTL_0663	-	hypothetical protein
606	 27.49	-1	645551..646423	-	290	89256054	-	FTL_0664	-	hypothetical protein
607	 37.68	+1	646600..648186	+	528	89256055	-	FTL_0665	-	hypothetical protein
608	 31.76	0	648263..651502	+	1079	89256056	-	FTL_0666	-	exodeoxyribonuclease V gamma chain
609	 33.52	0	651486..652016	+	176	89256057	-	FTL_0667	-	hypothetical protein
610	 30.68	0	652159..653589	+	476	89256058	-	FTL_0668	-	ATP-dependent DNA helicase
611	 32.16	0	653661..657314	+	1217	89256059	-	FTL_0669	-	exodeoxyribonuclease V beta chain
612	 31.32	0	657307..659148	+	613	89256060	-	FTL_0670	-	exodeoxyribonuclease V, alpha subunit
613	 34.50	0	659157..659927	-	256	89256061	-	FTL_0671	-	pantothenate kinase
614	 34.06	0	659991..660266	-	91	89256062	-	FTL_0672	-	aspartate alpha-decarboxylase
615	 30.53	0	660260..661045	-	261	89256063	-	FTL_0673	-	pantoate-beta-alanine ligase
616	 33.80	0	661032..661883	-	283	89256064	-	FTL_0674	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
617	 32.49	0	661831..662544	-	237	89256065	-	FTL_0675	-	hypothetical protein
618	 35.20	0	662852..664888	+	678	89256066	-	FTL_0676	-	DNA ligase
619	 30.69	0	664885..665262	+	125	89256067	-	FTL_0677	-	hypothetical protein
620	 31.56	0	665240..666120	-	293	89256068	isftu1	FTL_0678	-	transposase
621	 32.84	0	666344..667150	-	268	89256069	-	FTL_0679	-	polyamine transporter, subunit I, ABC transporter, membrane protein
622	 32.99	0	667164..668045	-	293	89256070	-	FTL_0680	-	polyamine transporter, subunit H, ABC transporter, membrane protein
623	 34.67	0	668045..669166	-	373	89256071	-	FTL_0681	-	polyamine transporter, ABC transporter,ATP-binding protein
624	 31.56	0	669449..670329	-	293	89256072	isftu1	FTL_0682	-	transposase
625	 29.55	0	671099..671521	-	140	89256073	-	FTL_0684	-	hypothetical protein
626	 34.53	0	671625..672374	-	249	89256074	-	FTL_0685	-	NH(3)-dependent NAD(+) synthetase
627	 34.28	0	672503..673975	-	490	89256075	-	FTL_0686	-	outer membrane efflux protein
628	 33.24	0	673985..675007	-	340	89256076	-	FTL_0687	-	HlyD family secretion protein
629	 33.99	0	675029..676558	-	509	89256077	-	FTL_0688	-	major facilitator transporter
630	 37.20	+1	676723..677550	+	275	89256078	-	FTL_0689	-	transcriptional regulator araC family protein
631	 32.39	0	677538..679229	-	563	89256079	-	FTL_0690	-	Acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)
632	 33.60	0	679337..680818	-	493	89256080	-	FTL_0691	-	proton-dependent oligopeptide transport (POT) family protein
633	 26.75	-1	681054..681782	-	242	89256081	-	FTL_0692	-	hypothetical protein
634	 32.17	0	681853..682539	+	228	89256082	-	FTL_0693	-	hypothetical protein
635	 27.75	-1	682529..683227	-	232	89256083	-	FTL_0694	-	hypothetical protein
636	 28.51	-1	683232..683957	-	241	89256084	-	FTL_0695	-	cell entry (mce) related family protein
637	 32.02	0	683967..684728	-	253	89256085	-	FTL_0696	-	ABC transporter, ATP-binding protein
638	 31.34	0	684743..685843	-	366	89256086	-	FTL_0697	-	ABC transporter, membrane protein
639	 29.63	0	685918..686754	-	278	89256087	-	FTL_0698	-	hypothetical protein
640	 35.04	0	686708..687706	-	332	89256088	-	FTL_0699	-	ribosomal large subunit pseudouridine synthase D
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.