IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
493	 33.16	0	516506..517663	+	385	89255941	-	FTL_0534	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
494	 34.13	0	517669..520047	+	792	89255942	-	FTL_0535	-	outer membrane protein
495	 31.15	0	520183..520686	+	167	89255943	-	FTL_0536	-	outer membrane protein OmpH
496	 36.69	+1	520705..521718	+	337	89255944	-	FTL_0537	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
497	 37.60	+1	521733..522224	+	163	89255945	-	FTL_0538	-	(3R)-hydroxymyristoyl-(acyl-carrier protein) dehydratase
498	 35.51	0	522227..523006	+	259	89255946	-	FTL_0539	-	UDP-N-acetylglucosamine acyltransferase
499	 31.58	0	523006..524148	+	380	89255947	-	FTL_0540	-	Lipid-A-disaccharide synthase
500	 30.27	0	524207..524794	+	195	89255948	-	FTL_0541	-	hypothetical protein
501	 33.87	0	524885..525259	+	124	89255949	-	FTL_0542	-	hypothetical protein
502	 33.58	0	527080..527889	-	269	89255950	-	FTL_0544	-	hypothetical protein
503	 29.28	0	527959..528723	-	254	89255951	-	FTL_0545	-	phosphatidylcholine synthase
504	 29.93	0	528771..529652	-	293	89255952	-	FTL_0546	-	geranyltranstransferase
505	 30.79	0	529649..530944	-	431	89255953	-	FTL_0547	-	3-deoxy-D-manno-octulosonic-acid transferase
506	 33.33	0	531049..531627	-	192	89255954	-	FTL_0548	-	HAM1 protein
507	 31.39	0	531734..532558	+	274	89255955	-	FTL_0549	-	pyrroline-5-carboxylate reductase
508	 31.88	0	534316..535002	+	228	89255956	-	FTL_0552	-	two-component response regulator
509	 32.75	0	535007..535870	+	287	89255957	-	FTL_0553	-	signal peptidase I
510	 33.33	0	535877..536569	+	230	89255958	-	FTL_0554	-	ribonuclease III
511	 31.57	0	536556..537464	+	302	89255959	-	FTL_0555	-	tRNA pseudouridine synthetase B
512	 34.18	0	537457..539709	+	750	89255960	-	FTL_0556	-	ribonuclease R
513	 35.05	0	539777..540415	-	212	89255961	-	FTL_0557	-	Delta 9 acyl-lipid fatty acid desaturase
514	 32.12	0	540620..541363	-	247	89255962	-	FTL_0558	-	oxidoreductase
515	 32.97	0	541365..541907	-	180	89255963	-	FTL_0559	-	hypothetical protein
516	 30.20	0	541904..542413	-	169	89255964	-	FTL_0560	-	hypothetical protein
517	 33.88	0	542406..543500	-	364	89255965	-	FTL_0561	-	cyclopropane-fatty-acid-phospholipid synthase
518	 29.28	0	547305..547946	-	213	89255966	isftu2	FTL_0568	-	transposase
519	 33.89	0	548287..548823	+	178	89255967	-	FTL_0569	-	hypothetical protein
520	 29.10	0	548941..549342	+	133	89255968	-	FTL_0570	-	hypothetical protein
521	 34.81	0	549517..550125	+	202	89255969	-	FTL_0571	-	hypothetical protein
522	 36.06	+1	550182..551612	+	476	89255970	-	FTL_0572	-	hypothetical protein
523	 33.64	0	551623..552606	+	327	89255971	-	FTL_0573	-	hypothetical protein
524	 32.90	0	552612..554006	+	464	89255972	-	FTL_0574	-	hypothetical protein
525	 29.60	0	554219..554860	-	213	89255973	isftu2	FTL_0575	-	transposase
526	 31.02	0	555154..555672	+	172	89255974	-	FTL_0576	-	hypothetical protein
527	 34.29	0	555709..555918	+	69	89255975	-	FTL_0577	-	hypothetical protein
528	 35.22	0	556334..557182	+	282	89255976	-	FTL_0578	-	ornithine cyclodeaminase
529	 33.19	0	557253..558668	+	471	89255977	-	FTL_0579	-	putative nicotinate phosphoribosyltransferase
530	 27.63	-1	558753..558980	+	75	89255978	-	FTL_0580	-	hypothetical protein
531	 30.76	0	559130..560410	+	426	89255979	-	FTL_0581	-	sugar transport protein
532	 32.92	0	560403..560891	-	162	89255980	-	FTL_0582	-	hypothetical protein
533	 38.64	+1	560953..562140	-	395	89255981	-	FTL_0583	-	acetyl-CoA acetyltransferase
534	 36.26	+1	562153..564849	-	898	89255982	-	FTL_0584	-	fusion product of 3-hydroxacyl-CoA dehydrogenase and acyl-CoA-binding protein
535	 37.62	+1	564922..567162	-	746	89255983	fadE	FTL_0585	-	acyl-CoA dehydrogenase
536	 34.10	0	567200..568888	-	562	89255984	-	FTL_0586	-	long chain fatty acid CoA ligase
537	 31.32	0	569104..569451	+	115	89255985	-	FTL_0587	-	arsenate reductase
538	 35.45	0	569500..571716	+	738	89255986	-	FTL_0588	-	isocitrate dehydrogenase
539	 28.04	-1	571730..572617	+	295	89255987	-	FTL_0589	-	hypothetical protein
540	 32.76	0	572637..576971	+	1444	89255988	-	FTL_0590	-	ATp-dependent helicase
541	 29.05	-1	577532..578185	+	217	89255989	isftu2	FTL_0591	-	transposase
542	 33.22	0	578226..579962	+	578	89255990	-	FTL_0592	-	dTDP-glucose 4,6-dehydratase
543	 32.39	0	579955..580587	+	210	89255991	-	FTL_0593	-	galactosyl transferase
544	 29.55	0	580589..581380	+	263	89255992	-	FTL_0594	-	UDP-glucose 4-epimerase
545	 28.75	-1	581370..582461	+	363	89255993	-	FTL_0595	-	galacturonosyl transferase
546	 35.01	0	582479..583789	+	436	89255994	-	FTL_0596	-	UDP-glucose/GDP-mannose dehydrogenase
547	 33.54	0	583789..584760	+	323	89255995	-	FTL_0597	-	NAD dependent epimerase
548	 22.52	-2	584777..586006	+	409	89255996	-	FTL_0598	-	membrane protein/O-antigen protein
549	 26.25	-1	586003..587103	+	366	89255997	-	FTL_0599	-	glycosyl transferase
550	 31.85	0	587103..588989	+	628	89255998	-	FTL_0600	-	asparagine synthase
551	 30.66	0	588982..590064	+	360	89255999	-	FTL_0601	-	sugar transamine/perosamine synthetase
552	 28.37	-1	590061..590786	+	241	89256000	-	FTL_0602	-	hypothetical protein
553	 30.11	0	590791..592278	+	495	89256001	-	FTL_0603	-	O-antigen flippase
554	 29.15	0	592271..593131	+	286	89256002	-	FTL_0604	-	glycosyltransferase
555	 38.19	+1	593156..594040	+	294	89256003	-	FTL_0605	-	glucose-1-phosphate thymidylyltransferase
556	 33.43	0	594587..595603	+	338	89256004	-	FTL_0606	-	dTDP-D-glucose 4,6-dehydratase
557	 31.44	0	595748..596628	+	293	89256005	isftu1	FTL_0607	-	transposase
558	 36.32	+1	596881..598287	+	468	89256006	-	FTL_0608	-	mannose-1-phosphate guanyltransferase
559	 35.42	0	598318..599802	+	494	89256007	-	FTL_0609	-	phosphomannomutase
560	 39.67	+2	600895..602157	-	420	89256008	rho	FTL_0610	-	transcription termination factor Rho
561	 34.57	0	602200..602523	-	107	89256009	-	FTL_0611	-	thioredoxin
562	 34.84	0	602721..603647	+	308	89256010	-	FTL_0612	-	exopolyphosphatase
563	 29.69	0	603576..604262	-	228	89256011	isftu2	FTL_0613	-	transposase
564	 35.55	0	605084..605986	+	300	89256012	-	FTL_0615	-	AAA family ATPase
565	 32.60	0	606074..607027	+	317	89256013	-	FTL_0616	-	DNA-directed RNA polymerase subunit alpha
566	 29.02	-1	607646..608086	-	146	89256014	-	FTL_0617	-	hypothetical protein
567	 32.94	0	609798..610565	+	255	89256015	-	FTL_0620	-	deoxyribonuclease
568	 29.23	0	611800..612432	-	210	89256016	isftu2	FTL_0622	-	transposase
569	 32.14	0	612750..613673	+	307	89256017	-	FTL_0623	-	ABC transporter, ATP-binding protein
570	 32.31	0	613682..614461	+	259	89256018	-	FTL_0624	-	ABC transporter, membrane protein
571	 34.50	0	614465..615409	-	314	89256019	-	FTL_0625	-	glycosyl transferase
572	 34.57	0	615600..616490	+	296	89256020	-	FTL_0626	-	inorganic phosphate/ATP-NAD kinase
573	 30.19	0	616487..617122	-	211	89256021	-	FTL_0627	-	threonine efflux protein
574	 31.56	0	619191..620071	-	293	89256022	isftu1	FTL_0631	-	transposase
575	 36.67	+1	620245..620544	+	99	89256023	-	FTL_0632	-	ArsR family transcriptional regulator
576	 34.10	0	620610..621128	+	172	89256024	-	FTL_0633	-	hypothetical protein
577	 41.27	+2	621153..621278	+	41	89256025	-	FTL_0634	-	NADH oxidase
578	 34.46	0	621339..621959	+	206	89256026	-	FTL_0635	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
579	 34.17	0	622009..622845	+	278	89256027	-	FTL_0636	-	NADH oxidase
580	 35.66	0	622890..623576	+	228	89256028	-	FTL_0637	-	hypothetical protein
581	 34.67	0	623578..624327	+	249	89256029	-	FTL_0638	-	hypothetical protein
582	 29.72	0	624320..624928	-	202	89256030	-	FTL_0639	-	oxidoreductase
583	 32.67	0	624980..625429	-	149	89256031	-	FTL_0640	-	hypothetical protein
584	 34.65	0	625660..626115	-	151	89256032	-	FTL_0641	-	hypothetical protein
585	 32.93	0	626176..626673	-	165	89256033	-	FTL_0642	-	lipoprotein
586	 33.10	0	626753..627178	+	141	89256034	-	FTL_0643	-	N utilisation substance protein B
587	 33.46	0	627162..627932	-	256	89256035	-	FTL_0644	-	carbon-nitrogen hydrolase
588	 32.61	0	628101..628514	+	137	89256036	-	FTL_0645	-	lipoprotein
589	 29.01	-1	628660..629469	-	269	89256037	-	FTL_0646	-	hypothetical protein
590	 27.74	-1	629577..630059	-	160	89256038	-	FTL_0647	-	hypothetical protein
591	 34.60	0	630059..630688	-	209	89256039	-	FTL_0648	-	aminotransferase
592	 34.58	0	630712..631191	-	159	89256040	-	FTL_0649	-	aspartate/tyrosine/aromatic aminotransferase family protein
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.