IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
468	 33.64	0	493358..494014	+	218	89255916	-	FTL_0509	-	tRNA/rRNA methyltransferase
469	 31.56	0	493992..494872	-	293	89255917	isftu1	FTL_0510	-	transposase
470	 32.31	0	495122..495802	+	226	89255918	-	FTL_0511	-	hypothetical protein
471	 28.69	-1	496082..496318	-	78	89255919	-	FTL_0512	-	BolA-like protein
472	 24.49	-2	496335..496628	-	97	89255920	-	FTL_0513	-	hypothetical protein
473	 32.43	0	496628..497290	-	220	89255921	-	FTL_0514	-	hypothetical protein
474	 33.15	0	497365..497898	-	177	89255922	-	FTL_0515	-	ABC transporter, periplasmic protein
475	 33.73	0	497898..498662	-	254	89255923	-	FTL_0516	-	ABC transporter, membrane protein
476	 32.84	0	498666..499469	-	267	89255924	-	FTL_0517	-	ABC transporter, ATP-binding protein
477	 30.77	0	499483..499755	-	90	89255925	-	FTL_0518	-	cell division topological specificity factor protein
478	 35.27	0	499758..500582	-	274	89255926	-	FTL_0519	-	septum site-determining protein MinD
479	 33.62	0	500622..501308	-	228	89255927	-	FTL_0520	-	septum site-determining protein MinC
480	 28.21	-1	501343..501498	-	51	89255928	rpmG	FTL_0521	-	50S ribosomal protein L33
481	 32.49	0	501525..501761	-	78	89255929	rpmB	FTL_0522	-	50S ribosomal protein L28
482	 35.07	0	501895..502239	-	114	89255930	-	FTL_0523	-	hypothetical protein
483	 34.22	0	502369..504408	+	679	89255931	-	FTL_0524	-	ATP-dependent DNA helicase RecG
484	 38.35	+1	505163..506677	+	504	89255932	-	FTL_0525	-	fumerate hydratase
485	 33.94	0	507162..507880	+	239	89255933	isftu1	FTL_0526	-	transposase
486	 28.77	-1	507885..508169	+	94	89255934	-	FTL_0527	-	endonuclease
487	 29.09	-1	508407..511280	+	957	89255935	-	FTL_0528	-	Type III restriction enzyme
488	 33.03	0	511277..511939	+	220	89255936	-	FTL_0529	-	uracil-DNA glycosylase
489	 29.93	0	512300..512593	-	97	89255937	-	FTL_0530	-	hypothetical protein
490	 29.46	0	512798..513055	-	85	89255938	-	FTL_0531	-	hypothetical protein
491	 33.97	0	513165..513635	-	156	89255939	-	FTL_0532	-	hypothetical protein
492	 35.37	0	513894..516500	+	868	89255940	-	FTL_0533	-	DNA gyrase, subunit A
493	 33.16	0	516506..517663	+	385	89255941	-	FTL_0534	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
494	 34.13	0	517669..520047	+	792	89255942	-	FTL_0535	-	outer membrane protein
495	 31.15	0	520183..520686	+	167	89255943	-	FTL_0536	-	outer membrane protein OmpH
496	 36.69	+1	520705..521718	+	337	89255944	-	FTL_0537	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
497	 37.60	+1	521733..522224	+	163	89255945	-	FTL_0538	-	(3R)-hydroxymyristoyl-(acyl-carrier protein) dehydratase
498	 35.51	0	522227..523006	+	259	89255946	-	FTL_0539	-	UDP-N-acetylglucosamine acyltransferase
499	 31.58	0	523006..524148	+	380	89255947	-	FTL_0540	-	Lipid-A-disaccharide synthase
500	 30.27	0	524207..524794	+	195	89255948	-	FTL_0541	-	hypothetical protein
501	 33.87	0	524885..525259	+	124	89255949	-	FTL_0542	-	hypothetical protein
502	 33.58	0	527080..527889	-	269	89255950	-	FTL_0544	-	hypothetical protein
503	 29.28	0	527959..528723	-	254	89255951	-	FTL_0545	-	phosphatidylcholine synthase
504	 29.93	0	528771..529652	-	293	89255952	-	FTL_0546	-	geranyltranstransferase
505	 30.79	0	529649..530944	-	431	89255953	-	FTL_0547	-	3-deoxy-D-manno-octulosonic-acid transferase
506	 33.33	0	531049..531627	-	192	89255954	-	FTL_0548	-	HAM1 protein
507	 31.39	0	531734..532558	+	274	89255955	-	FTL_0549	-	pyrroline-5-carboxylate reductase
508	 31.88	0	534316..535002	+	228	89255956	-	FTL_0552	-	two-component response regulator
509	 32.75	0	535007..535870	+	287	89255957	-	FTL_0553	-	signal peptidase I
510	 33.33	0	535877..536569	+	230	89255958	-	FTL_0554	-	ribonuclease III
511	 31.57	0	536556..537464	+	302	89255959	-	FTL_0555	-	tRNA pseudouridine synthetase B
512	 34.18	0	537457..539709	+	750	89255960	-	FTL_0556	-	ribonuclease R
513	 35.05	0	539777..540415	-	212	89255961	-	FTL_0557	-	Delta 9 acyl-lipid fatty acid desaturase
514	 32.12	0	540620..541363	-	247	89255962	-	FTL_0558	-	oxidoreductase
515	 32.97	0	541365..541907	-	180	89255963	-	FTL_0559	-	hypothetical protein
516	 30.20	0	541904..542413	-	169	89255964	-	FTL_0560	-	hypothetical protein
517	 33.88	0	542406..543500	-	364	89255965	-	FTL_0561	-	cyclopropane-fatty-acid-phospholipid synthase
518	 29.28	0	547305..547946	-	213	89255966	isftu2	FTL_0568	-	transposase
519	 33.89	0	548287..548823	+	178	89255967	-	FTL_0569	-	hypothetical protein
520	 29.10	0	548941..549342	+	133	89255968	-	FTL_0570	-	hypothetical protein
521	 34.81	0	549517..550125	+	202	89255969	-	FTL_0571	-	hypothetical protein
522	 36.06	+1	550182..551612	+	476	89255970	-	FTL_0572	-	hypothetical protein
523	 33.64	0	551623..552606	+	327	89255971	-	FTL_0573	-	hypothetical protein
524	 32.90	0	552612..554006	+	464	89255972	-	FTL_0574	-	hypothetical protein
525	 29.60	0	554219..554860	-	213	89255973	isftu2	FTL_0575	-	transposase
526	 31.02	0	555154..555672	+	172	89255974	-	FTL_0576	-	hypothetical protein
527	 34.29	0	555709..555918	+	69	89255975	-	FTL_0577	-	hypothetical protein
528	 35.22	0	556334..557182	+	282	89255976	-	FTL_0578	-	ornithine cyclodeaminase
529	 33.19	0	557253..558668	+	471	89255977	-	FTL_0579	-	putative nicotinate phosphoribosyltransferase
530	 27.63	-1	558753..558980	+	75	89255978	-	FTL_0580	-	hypothetical protein
531	 30.76	0	559130..560410	+	426	89255979	-	FTL_0581	-	sugar transport protein
532	 32.92	0	560403..560891	-	162	89255980	-	FTL_0582	-	hypothetical protein
533	 38.64	+1	560953..562140	-	395	89255981	-	FTL_0583	-	acetyl-CoA acetyltransferase
534	 36.26	+1	562153..564849	-	898	89255982	-	FTL_0584	-	fusion product of 3-hydroxacyl-CoA dehydrogenase and acyl-CoA-binding protein
535	 37.62	+1	564922..567162	-	746	89255983	fadE	FTL_0585	-	acyl-CoA dehydrogenase
536	 34.10	0	567200..568888	-	562	89255984	-	FTL_0586	-	long chain fatty acid CoA ligase
537	 31.32	0	569104..569451	+	115	89255985	-	FTL_0587	-	arsenate reductase
538	 35.45	0	569500..571716	+	738	89255986	-	FTL_0588	-	isocitrate dehydrogenase
539	 28.04	-1	571730..572617	+	295	89255987	-	FTL_0589	-	hypothetical protein
540	 32.76	0	572637..576971	+	1444	89255988	-	FTL_0590	-	ATp-dependent helicase
541	 29.05	-1	577532..578185	+	217	89255989	isftu2	FTL_0591	-	transposase
542	 33.22	0	578226..579962	+	578	89255990	-	FTL_0592	-	dTDP-glucose 4,6-dehydratase
543	 32.39	0	579955..580587	+	210	89255991	-	FTL_0593	-	galactosyl transferase
544	 29.55	0	580589..581380	+	263	89255992	-	FTL_0594	-	UDP-glucose 4-epimerase
545	 28.75	-1	581370..582461	+	363	89255993	-	FTL_0595	-	galacturonosyl transferase
546	 35.01	0	582479..583789	+	436	89255994	-	FTL_0596	-	UDP-glucose/GDP-mannose dehydrogenase
547	 33.54	0	583789..584760	+	323	89255995	-	FTL_0597	-	NAD dependent epimerase
548	 22.52	-2	584777..586006	+	409	89255996	-	FTL_0598	-	membrane protein/O-antigen protein
549	 26.25	-1	586003..587103	+	366	89255997	-	FTL_0599	-	glycosyl transferase
550	 31.85	0	587103..588989	+	628	89255998	-	FTL_0600	-	asparagine synthase
551	 30.66	0	588982..590064	+	360	89255999	-	FTL_0601	-	sugar transamine/perosamine synthetase
552	 28.37	-1	590061..590786	+	241	89256000	-	FTL_0602	-	hypothetical protein
553	 30.11	0	590791..592278	+	495	89256001	-	FTL_0603	-	O-antigen flippase
554	 29.15	0	592271..593131	+	286	89256002	-	FTL_0604	-	glycosyltransferase
555	 38.19	+1	593156..594040	+	294	89256003	-	FTL_0605	-	glucose-1-phosphate thymidylyltransferase
556	 33.43	0	594587..595603	+	338	89256004	-	FTL_0606	-	dTDP-D-glucose 4,6-dehydratase
557	 31.44	0	595748..596628	+	293	89256005	isftu1	FTL_0607	-	transposase
558	 36.32	+1	596881..598287	+	468	89256006	-	FTL_0608	-	mannose-1-phosphate guanyltransferase
559	 35.42	0	598318..599802	+	494	89256007	-	FTL_0609	-	phosphomannomutase
560	 39.67	+2	600895..602157	-	420	89256008	rho	FTL_0610	-	transcription termination factor Rho
561	 34.57	0	602200..602523	-	107	89256009	-	FTL_0611	-	thioredoxin
562	 34.84	0	602721..603647	+	308	89256010	-	FTL_0612	-	exopolyphosphatase
563	 29.69	0	603576..604262	-	228	89256011	isftu2	FTL_0613	-	transposase
564	 35.55	0	605084..605986	+	300	89256012	-	FTL_0615	-	AAA family ATPase
565	 32.60	0	606074..607027	+	317	89256013	-	FTL_0616	-	DNA-directed RNA polymerase subunit alpha
566	 29.02	-1	607646..608086	-	146	89256014	-	FTL_0617	-	hypothetical protein
567	 32.94	0	609798..610565	+	255	89256015	-	FTL_0620	-	deoxyribonuclease
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.