IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
363	 29.51	0	370444..371070	-	208	89255811	isftu2	FTL_0400	-	transposase
364	 26.23	-1	371278..371643	-	121	89255812	-	FTL_0401	-	Sua5_yciO_yrdC family protein
365	 29.19	0	371704..372234	+	176	89255813	-	FTL_0402	-	intracellular septation protein A family protein
366	 26.98	-1	372308..372559	+	83	89255814	-	FTL_0403	-	hypothetical protein
367	 35.89	+1	372548..373564	-	338	89255815	-	FTL_0404	-	glucose kinase
368	 34.79	0	373658..374410	+	250	89255816	-	FTL_0405	-	menaquinone biosynthesis methyltransferase
369	 30.10	0	374412..374999	+	195	89255817	-	FTL_0406	-	hypothetical protein
370	 33.69	0	374992..376650	+	552	89255818	-	FTL_0407	-	2-polyprenylphenol 6-hydroxylase
371	 32.15	0	376656..376994	+	112	89255819	-	FTL_0408	-	histidine triad (HIT) family protein
372	 31.50	0	377509..378162	-	217	89255820	-	FTL_0409	-	purine/pyrimidine phosphoribosyl transferase family protein
373	 28.74	-1	378140..378967	+	275	89255821	-	FTL_0410	-	hypothetical protein
374	 30.94	0	378969..379844	-	291	89255822	-	FTL_0411	-	hypothetical protein
375	 30.39	0	379923..380771	-	282	89255823	-	FTL_0412	-	UDP-N-acetylenolpyruvoylglucosamine reductase
376	 32.18	0	380779..382083	-	434	89255824	-	FTL_0413	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
377	 35.48	0	382052..383449	-	465	89255825	engA	FTL_0414	-	GTP-binding protein EngA
378	 36.03	+1	383686..384204	-	172	89255826	-	FTL_0415	-	hypothetical protein
379	 29.77	0	384458..385270	+	270	89255827	isftu2	FTL_0416	-	transposase
380	 32.41	0	385054..385880	-	275	89255828	isftu1	FTL_0417	-	transposase
381	 32.53	0	385938..386186	-	82	89255829	-	FTL_0418	-	hypothetical protein
382	 33.88	0	386267..388273	-	668	89255830	-	FTL_0419	-	oligopeptidase A
383	 30.65	0	388365..388736	+	123	89255831	-	FTL_0420	-	hypothetical protein
384	 37.11	+1	388817..389266	+	149	89255832	-	FTL_0421	-	lipoprotein
385	 32.14	0	389927..390430	+	167	89255833	-	FTL_0423	-	hypothetical protein
386	 33.33	0	390463..390930	+	155	89255834	-	FTL_0424	-	lipoprotein
387	 30.97	0	391093..392445	+	450	89255835	-	FTL_0425	-	Type IV pili glycosylation protein
388	 34.47	0	392499..394793	-	764	89255836	-	FTL_0426	-	DNA topoisomerase I
389	 36.14	+1	394992..395633	+	213	89255837	-	FTL_0427	-	chmomosome partition protein A
390	 34.10	0	395626..396540	+	304	89255838	-	FTL_0428	-	chromosome partition protein B
391	 32.77	0	396554..397261	+	235	89255839	-	FTL_0429	-	glutamine amidotransferase, class I
392	 31.52	0	397264..398145	+	293	89255840	-	FTL_0430	-	hypothetical protein
393	 36.59	+1	398142..398417	+	91	89255841	-	FTL_0431	-	hypothetical protein
394	 27.59	-1	398559..398732	+	57	89255842	-	FTL_0432	-	hypothetical protein
395	 33.01	0	398792..399412	-	206	89255843	-	FTL_0433	-	ribosomal large subunit methyltransferase J
396	 30.56	0	399570..400037	+	155	89255844	-	FTL_0434	-	hypothetical protein
397	 29.84	0	400032..400517	-	161	89255845	-	FTL_0435	-	lipoprotein signal peptidase II
398	 35.86	0	400504..403311	-	935	89255846	ileS	FTL_0436	-	isoleucyl-tRNA synthetase
399	 30.40	0	403404..404324	-	306	89255847	-	FTL_0437	-	riboflavin biosynthesis protein RibF
400	 35.65	0	404475..406289	+	604	89255848	-	FTL_0438	-	malate dehydrogenase
401	 37.98	+1	406452..408107	+	551	89255849	-	FTL_0439	-	hypothetical protein
402	 32.17	0	408242..409071	+	276	89255850	isftu1	FTL_0440	-	transposase
403	 32.00	0	409289..410188	+	299	89255851	isftu2	FTL_0441	-	transposase
404	 30.68	0	410238..410840	+	200	89255852	-	FTL_0442	-	hypothetical protein
405	 33.72	0	410837..412141	-	434	89255853	-	FTL_0443	-	major facilitator transporter
406	 34.07	0	412077..414101	-	674	89255854	metG	FTL_0444	-	methionyl-tRNA synthetase
407	 30.35	0	414671..415207	-	178	89255855	-	FTL_0445	-	hypothetical protein
408	 37.50	+1	421380..421595	+	71	89255856	-	FTL_0446	-	hypothetical protein
409	 27.65	-1	421977..423032	-	351	89255857	-	FTL_0447	-	hypothetical protein
410	 29.98	0	423165..423821	-	218	89255858	-	FTL_0448	-	hypothetical protein
411	 31.85	0	425025..425360	+	111	89255859	-	FTL_0449	-	hypothetical protein
412	 28.64	-1	425333..426184	-	283	89255860	-	FTL_0450	-	phosphatidylserine decarboxylase proenzyme
413	 31.29	0	426283..427263	+	326	89255861	-	FTL_0451	-	hypothetical protein
414	 31.90	0	427272..428315	+	347	89255862	-	FTL_0452	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
415	 34.50	0	428329..429696	+	455	89255863	-	FTL_0453	-	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase
416	 33.50	0	429717..431555	+	612	89255864	-	FTL_0454	-	glucosamine--fructose-6-phosphate aminotransferase
417	 29.46	0	431645..432160	+	171	89255865	-	FTL_0455	-	acetyltransferase
418	 35.86	0	432157..432354	-	65	89255866	rpsU	FTL_0456	-	30S ribosomal protein S21
419	 31.86	0	432354..432557	-	67	89255867	-	FTL_0457	-	cold shock protein
420	 30.30	0	432804..433133	-	109	89255868	-	FTL_0458	-	hypothetical protein
421	 36.32	+1	433260..434030	+	256	89255869	-	FTL_0459	-	methionine aminopeptidase
422	 30.62	0	434032..434880	+	282	89255870	-	FTL_0460	-	hypothetical protein
423	 29.43	0	434974..435639	+	221	89255871	-	FTL_0461	-	hypothetical protein
424	 33.56	0	435772..437997	+	741	89255872	-	FTL_0462	-	DNA topoisomerase IV subunit A
425	 33.77	0	437997..438683	+	228	89255873	-	FTL_0463	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
426	 24.67	-2	438670..439269	-	199	89255874	-	FTL_0464	-	hypothetical protein
427	 31.55	0	439262..440380	-	372	89255875	-	FTL_0465	-	BNR/Asp-box repeat-containing protein
428	 30.96	0	440579..442555	+	658	89255876	-	FTL_0466	-	soluble lytic murein transglycosylase
429	 34.44	0	442569..442838	-	89	89255877	-	FTL_0467	-	hypothetical protein
430	 30.43	0	442789..443442	-	217	89255878	isftu2	FTL_0468	-	transposase
431	 27.60	-1	443682..444065	-	127	89255879	-	FTL_0469	-	hypothetical protein
432	 28.91	-1	444418..444801	+	127	89255880	-	FTL_0470	-	hypothetical protein
433	 29.47	0	445158..445571	+	137	89255881	-	FTL_0471	-	hypothetical protein
434	 35.89	+1	445928..449407	+	1159	89255882	-	FTL_0472	-	DNA polymerase III alpha subunit
435	 31.60	0	449483..450118	+	211	89255883	-	FTL_0473	-	peptide deformylase
436	 34.71	0	450781..452085	+	434	89255884	-	FTL_0474	-	lipoprotein releasing system, subunit C,putative membrane protein
437	 33.91	0	452078..452773	+	231	89255885	-	FTL_0475	-	lipoprotein releasing system, subunit D, ABC transporter, ATP-binding protein
438	 32.91	0	452890..455031	+	713	89255886	-	FTL_0476	-	lysine decarboxylase, inducable
439	 37.05	+1	455122..456198	+	358	89255887	gcvT	FTL_0477	-	glycine cleavage system aminomethyltransferase T
440	 38.28	+1	456255..456638	+	127	89255888	-	FTL_0478	-	glycine cleavage system H protein
441	 36.40	+1	456703..458070	+	455	89255889	-	FTL_0479	-	glycine dehydrogenase subunit 1
442	 37.83	+1	458076..459521	+	481	89255890	-	FTL_0480	-	glycine dehydrogenase subunit 2
443	 31.09	0	459641..460486	-	281	89255891	-	FTL_0481	-	shikimate 5-dehydrogenase
444	 33.27	0	460512..463724	-	1070	89255892	-	FTL_0482	-	pullulonase
445	 34.79	0	463758..465680	-	640	89255893	-	FTL_0483	-	glycogen branching enzyme
446	 35.84	0	465981..467615	+	544	89255894	-	FTL_0484	-	phosphoglucomutase
447	 37.03	+1	467649..468920	+	423	89255895	-	FTL_0485	-	glucose-1-phosphate adenylyltransferase
448	 36.73	+1	468930..470399	+	489	89255896	glgA	FTL_0486	-	glycogen synthase
449	 29.99	0	470504..472777	+	757	89255897	-	FTL_0487	-	maltodextrin phosphorylase
450	 32.24	0	472821..474284	+	487	89255898	-	FTL_0488	-	4-alpha-glucanotransferase
451	 37.71	+1	474376..475266	+	296	89255899	glyQ	FTL_0489	-	glycyl-tRNA synthetase subunit alpha
452	 29.30	0	475477..476940	+	487	89255900	-	FTL_0490	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
453	 32.07	0	476962..477357	+	131	89255901	-	FTL_0491	-	outer membrane lipoprotein
454	 33.11	0	477710..479068	+	452	89255902	-	FTL_0492	-	UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase
455	 34.07	0	479077..479895	+	272	89255903	-	FTL_0493	-	hypothetical protein
456	 34.38	0	479944..480993	-	349	89255904	-	FTL_0494	-	aspartate-semialdehyde dehydrogenase
457	 34.49	0	482791..484083	+	430	89255905	-	FTL_0498	-	threonine synthase
458	 34.76	0	484671..485159	+	162	89255906	-	FTL_0499	-	S-adenosylmethionine decarboxylase
459	 32.87	0	485159..486028	+	289	89255907	-	FTL_0500	-	spermidine synthase
460	 30.36	0	486393..487703	+	436	89255908	-	FTL_0501	-	putative arginine decarboxylase
461	 33.10	0	487684..488544	+	286	89255909	-	FTL_0502	-	hypothetical protein
462	 31.44	0	488545..489425	-	293	89255910	isftu1	FTL_0503	-	transposase
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.