IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
318	 34.49	0	322181..322786	+	201	89255766	-	FTL_0341	-	deoxyribodipyrimidine photolyase
319	 35.76	0	322844..323338	+	164	89255767	-	FTL_0342	-	deoxyribodipyrimidine photolyase
320	 34.05	0	323554..325083	+	509	89255768	-	FTL_0343	-	hypothetical protein
321	 36.23	+1	325080..325217	+	45	89255769	-	FTL_0344	-	hypothetical protein
322	 30.76	0	325343..326275	+	310	89255770	-	FTL_0345	-	bile acid symporter family protein
323	 26.91	-1	326342..326839	+	165	89255771	-	FTL_0346	-	hypothetical protein
324	 32.30	0	326969..327547	+	192	89255772	-	FTL_0347	-	hypothetical protein
325	 31.22	0	330636..331061	-	141	89255773	-	FTL_0352	-	hypothetical protein
326	 31.44	0	331033..331913	-	293	89255774	isftu1	FTL_0353	-	transposase
327	 28.33	-1	332031..332390	-	119	89255775	-	FTL_0354	-	hypothetical protein
328	 28.65	-1	332404..333258	-	284	89255776	ubiA	FTL_0355	-	prenyltransferase
329	 28.80	-1	333261..333767	-	168	89255777	-	FTL_0356	-	hypothetical protein
330	 39.27	+1	333866..334573	+	235	89255778	-	FTL_0357	-	ribonuclease PH
331	 28.70	-1	334627..334950	-	107	89255779	-	FTL_0358	-	hypothetical protein
332	 33.44	0	335055..335957	-	300	89255780	-	FTL_0359	-	Type IV pili fiber building block protein
333	 32.96	0	336062..337135	-	357	89255781	-	FTL_0360	-	heat shock protein HtpX
334	 32.64	0	337139..337714	-	191	89255782	-	FTL_0361	-	LemA-like protein
335	 29.86	0	340774..341436	+	220	89255783	isftu2	FTL_0367	-	transposase
336	 33.00	0	342870..343169	-	99	89255784	-	FTL_0370	-	arsenical restistance operon repressor
337	 30.43	0	343378..344031	+	217	89255785	-	FTL_0371	-	hypothetical protein
338	 35.94	+1	344351..345349	+	332	89255786	-	FTL_0372	-	glycerol-3-phosphate dehydrogenase
339	 31.84	0	345350..345886	-	178	89255787	-	FTL_0373	-	hypothetical protein
340	 36.32	+1	345891..347261	-	456	89255788	-	FTL_0374	-	DNA repair protein RadA
341	 31.39	0	347269..348039	-	256	89255789	-	FTL_0375	-	hypothetical protein
342	 30.33	0	348036..348635	-	199	89255790	-	FTL_0376	-	hypothetical protein
343	 38.62	+1	348638..349696	-	352	89255791	-	FTL_0377	-	chorismate synthase
344	 29.20	0	349837..350490	-	217	89255792	-	FTL_0378	-	hypothetical protein
345	 35.28	0	350509..351021	-	170	89255793	-	FTL_0379	-	methionine sulfoxide reductase B
346	 40.86	+2	351182..351739	+	185	89255794	-	FTL_0380	-	superoxide dismuate (Cu-Zn) precusor
347	 32.83	0	351743..352534	+	263	89255795	-	FTL_0381	-	hypothetical protein
348	 35.84	0	352509..353903	-	464	89255796	-	FTL_0382	-	amino acid permease
349	 36.64	+1	354053..354415	+	120	89255797	-	FTL_0383	-	mannose-6-phosphate isomerase, fragment
350	 36.69	+1	355654..356844	-	396	89255798	-	FTL_0387	-	aspartate aminotransferase
351	 30.86	0	357047..357934	+	295	89255799	-	FTL_0388	-	cation transporter
352	 35.88	0	358020..359669	+	549	89255800	-	FTL_0389	-	DNA repair protein recN
353	 36.10	+1	359970..361055	-	361	89255801	-	FTL_0390	-	Type IV pili fiber building block protein
354	 31.56	0	360979..361203	-	74	89255802	-	FTL_0391	-	hypothetical protein
355	 31.53	0	362203..362313	-	36	89255803	-	FTL_0392	-	Type IV pili fiber building block protein
356	 33.33	0	362697..363416	+	239	89255804	-	FTL_0393	-	hypothetical protein
357	 37.46	+1	363556..364404	+	282	89255805	-	FTL_0394	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase bifunctional protein
358	 37.36	+1	364624..365667	+	347	89255806	-	FTL_0395	-	phosphoribosylaminoimidazole synthetase
359	 35.97	+1	365667..367979	+	770	89255807	-	FTL_0396	-	fusion protein PurC/PurD
360	 35.24	0	367983..368558	+	191	89255808	-	FTL_0397	-	phosphoribosylglycinamide formyltransferase
361	 39.43	+2	368675..369166	+	163	89255809	-	FTL_0398	-	phosphoribosylaminoimidazole carboxylase,catalyic subunit
362	 36.43	+1	369170..370267	+	365	89255810	-	FTL_0399	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
363	 29.51	0	370444..371070	-	208	89255811	isftu2	FTL_0400	-	transposase
364	 26.23	-1	371278..371643	-	121	89255812	-	FTL_0401	-	Sua5_yciO_yrdC family protein
365	 29.19	0	371704..372234	+	176	89255813	-	FTL_0402	-	intracellular septation protein A family protein
366	 26.98	-1	372308..372559	+	83	89255814	-	FTL_0403	-	hypothetical protein
367	 35.89	+1	372548..373564	-	338	89255815	-	FTL_0404	-	glucose kinase
368	 34.79	0	373658..374410	+	250	89255816	-	FTL_0405	-	menaquinone biosynthesis methyltransferase
369	 30.10	0	374412..374999	+	195	89255817	-	FTL_0406	-	hypothetical protein
370	 33.69	0	374992..376650	+	552	89255818	-	FTL_0407	-	2-polyprenylphenol 6-hydroxylase
371	 32.15	0	376656..376994	+	112	89255819	-	FTL_0408	-	histidine triad (HIT) family protein
372	 31.50	0	377509..378162	-	217	89255820	-	FTL_0409	-	purine/pyrimidine phosphoribosyl transferase family protein
373	 28.74	-1	378140..378967	+	275	89255821	-	FTL_0410	-	hypothetical protein
374	 30.94	0	378969..379844	-	291	89255822	-	FTL_0411	-	hypothetical protein
375	 30.39	0	379923..380771	-	282	89255823	-	FTL_0412	-	UDP-N-acetylenolpyruvoylglucosamine reductase
376	 32.18	0	380779..382083	-	434	89255824	-	FTL_0413	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
377	 35.48	0	382052..383449	-	465	89255825	engA	FTL_0414	-	GTP-binding protein EngA
378	 36.03	+1	383686..384204	-	172	89255826	-	FTL_0415	-	hypothetical protein
379	 29.77	0	384458..385270	+	270	89255827	isftu2	FTL_0416	-	transposase
380	 32.41	0	385054..385880	-	275	89255828	isftu1	FTL_0417	-	transposase
381	 32.53	0	385938..386186	-	82	89255829	-	FTL_0418	-	hypothetical protein
382	 33.88	0	386267..388273	-	668	89255830	-	FTL_0419	-	oligopeptidase A
383	 30.65	0	388365..388736	+	123	89255831	-	FTL_0420	-	hypothetical protein
384	 37.11	+1	388817..389266	+	149	89255832	-	FTL_0421	-	lipoprotein
385	 32.14	0	389927..390430	+	167	89255833	-	FTL_0423	-	hypothetical protein
386	 33.33	0	390463..390930	+	155	89255834	-	FTL_0424	-	lipoprotein
387	 30.97	0	391093..392445	+	450	89255835	-	FTL_0425	-	Type IV pili glycosylation protein
388	 34.47	0	392499..394793	-	764	89255836	-	FTL_0426	-	DNA topoisomerase I
389	 36.14	+1	394992..395633	+	213	89255837	-	FTL_0427	-	chmomosome partition protein A
390	 34.10	0	395626..396540	+	304	89255838	-	FTL_0428	-	chromosome partition protein B
391	 32.77	0	396554..397261	+	235	89255839	-	FTL_0429	-	glutamine amidotransferase, class I
392	 31.52	0	397264..398145	+	293	89255840	-	FTL_0430	-	hypothetical protein
393	 36.59	+1	398142..398417	+	91	89255841	-	FTL_0431	-	hypothetical protein
394	 27.59	-1	398559..398732	+	57	89255842	-	FTL_0432	-	hypothetical protein
395	 33.01	0	398792..399412	-	206	89255843	-	FTL_0433	-	ribosomal large subunit methyltransferase J
396	 30.56	0	399570..400037	+	155	89255844	-	FTL_0434	-	hypothetical protein
397	 29.84	0	400032..400517	-	161	89255845	-	FTL_0435	-	lipoprotein signal peptidase II
398	 35.86	0	400504..403311	-	935	89255846	ileS	FTL_0436	-	isoleucyl-tRNA synthetase
399	 30.40	0	403404..404324	-	306	89255847	-	FTL_0437	-	riboflavin biosynthesis protein RibF
400	 35.65	0	404475..406289	+	604	89255848	-	FTL_0438	-	malate dehydrogenase
401	 37.98	+1	406452..408107	+	551	89255849	-	FTL_0439	-	hypothetical protein
402	 32.17	0	408242..409071	+	276	89255850	isftu1	FTL_0440	-	transposase
403	 32.00	0	409289..410188	+	299	89255851	isftu2	FTL_0441	-	transposase
404	 30.68	0	410238..410840	+	200	89255852	-	FTL_0442	-	hypothetical protein
405	 33.72	0	410837..412141	-	434	89255853	-	FTL_0443	-	major facilitator transporter
406	 34.07	0	412077..414101	-	674	89255854	metG	FTL_0444	-	methionyl-tRNA synthetase
407	 30.35	0	414671..415207	-	178	89255855	-	FTL_0445	-	hypothetical protein
408	 37.50	+1	421380..421595	+	71	89255856	-	FTL_0446	-	hypothetical protein
409	 27.65	-1	421977..423032	-	351	89255857	-	FTL_0447	-	hypothetical protein
410	 29.98	0	423165..423821	-	218	89255858	-	FTL_0448	-	hypothetical protein
411	 31.85	0	425025..425360	+	111	89255859	-	FTL_0449	-	hypothetical protein
412	 28.64	-1	425333..426184	-	283	89255860	-	FTL_0450	-	phosphatidylserine decarboxylase proenzyme
413	 31.29	0	426283..427263	+	326	89255861	-	FTL_0451	-	hypothetical protein
414	 31.90	0	427272..428315	+	347	89255862	-	FTL_0452	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
415	 34.50	0	428329..429696	+	455	89255863	-	FTL_0453	-	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase
416	 33.50	0	429717..431555	+	612	89255864	-	FTL_0454	-	glucosamine--fructose-6-phosphate aminotransferase
417	 29.46	0	431645..432160	+	171	89255865	-	FTL_0455	-	acetyltransferase
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.