IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
291	 38.29	+1	295558..298239	+	893	89255740	aceE	FTL_0309	-	pyruvate dehydrogenase subunit E1
292	 38.22	+1	298257..299852	+	531	89255741	-	FTL_0310	-	dihydrolipoamide acetyltransferase
293	 38.92	+1	299866..301278	+	470	89255742	-	FTL_0311	-	dihydrolipoamide dehydrogenase
294	 33.33	0	301298..301432	-	44	89255743	-	FTL_0312	-	transposase
295	 26.24	-1	301517..301657	-	46	89255744	-	FTL_0313	-	hypothetical protein
296	 31.44	0	301648..302528	+	296	89257203	isftu1	FTL_0314	-	transposase
297	 29.48	0	302656..303303	+	215	89255745	-	FTL_0315	-	MutT protein
298	 32.49	0	303321..303674	+	117	89255746	-	FTL_0316	-	arsenate reductase
299	 37.20	+1	303698..304033	-	111	89255747	-	FTL_0317	-	hypothetical protein
300	 35.37	0	304210..304455	-	81	89255748	-	FTL_0318	-	lipoprotein
301	 33.79	0	304533..305846	-	437	89255749	-	FTL_0319	-	hypothetical protein
302	 33.86	0	305982..307499	-	505	89255750	-	FTL_0320	-	aspartate aminotransferase
303	 31.58	0	310408..311661	-	417	89255751	-	FTL_0325	-	OmpA family protein
304	 34.19	0	311853..312317	+	154	89255752	-	FTL_0326	-	FKBP-type 16 kDa peptidyl-prolyl cis-transisomerase
305	 36.89	+1	312298..313254	+	318	89255753	-	FTL_0327	-	IspH protein
306	 34.99	0	313256..313618	+	120	89255754	-	FTL_0328	-	chorismate mutase
307	 31.86	0	313633..314448	+	271	89255755	-	FTL_0329	-	CDP-alcohol phosphatidyltransferase
308	 42.51	+2	314453..314659	-	68	89255756	-	FTL_0330	-	hypothetical protein
309	 34.75	0	314829..315536	+	235	89255757	-	FTL_0331	-	TolQ protein
310	 34.92	0	315552..315992	+	146	89255758	-	FTL_0332	-	TolR protein
311	 34.32	0	315979..316890	+	303	89255759	-	FTL_0333	-	hypothetical protein
312	 32.26	0	316902..318209	+	435	89255760	-	FTL_0334	-	TolB protein precursor
313	 35.37	0	318219..318464	+	81	89255761	-	FTL_0335	-	lipoprotein
314	 34.29	0	318483..319106	+	207	89255762	-	FTL_0336	-	peptidoglycan-associated lipoprotein
315	 25.64	-2	320517..320867	+	116	89255763	-	FTL_0338	-	GCN5-related N-acetyltransferase
316	 31.44	0	321013..321893	+	293	89255764	isftu1	FTL_0339	-	transposase
317	 31.43	0	321865..322074	+	69	89255765	-	FTL_0340	-	hypothetical protein
318	 34.49	0	322181..322786	+	201	89255766	-	FTL_0341	-	deoxyribodipyrimidine photolyase
319	 35.76	0	322844..323338	+	164	89255767	-	FTL_0342	-	deoxyribodipyrimidine photolyase
320	 34.05	0	323554..325083	+	509	89255768	-	FTL_0343	-	hypothetical protein
321	 36.23	+1	325080..325217	+	45	89255769	-	FTL_0344	-	hypothetical protein
322	 30.76	0	325343..326275	+	310	89255770	-	FTL_0345	-	bile acid symporter family protein
323	 26.91	-1	326342..326839	+	165	89255771	-	FTL_0346	-	hypothetical protein
324	 32.30	0	326969..327547	+	192	89255772	-	FTL_0347	-	hypothetical protein
325	 31.22	0	330636..331061	-	141	89255773	-	FTL_0352	-	hypothetical protein
326	 31.44	0	331033..331913	-	293	89255774	isftu1	FTL_0353	-	transposase
327	 28.33	-1	332031..332390	-	119	89255775	-	FTL_0354	-	hypothetical protein
328	 28.65	-1	332404..333258	-	284	89255776	ubiA	FTL_0355	-	prenyltransferase
329	 28.80	-1	333261..333767	-	168	89255777	-	FTL_0356	-	hypothetical protein
330	 39.27	+1	333866..334573	+	235	89255778	-	FTL_0357	-	ribonuclease PH
331	 28.70	-1	334627..334950	-	107	89255779	-	FTL_0358	-	hypothetical protein
332	 33.44	0	335055..335957	-	300	89255780	-	FTL_0359	-	Type IV pili fiber building block protein
333	 32.96	0	336062..337135	-	357	89255781	-	FTL_0360	-	heat shock protein HtpX
334	 32.64	0	337139..337714	-	191	89255782	-	FTL_0361	-	LemA-like protein
335	 29.86	0	340774..341436	+	220	89255783	isftu2	FTL_0367	-	transposase
336	 33.00	0	342870..343169	-	99	89255784	-	FTL_0370	-	arsenical restistance operon repressor
337	 30.43	0	343378..344031	+	217	89255785	-	FTL_0371	-	hypothetical protein
338	 35.94	+1	344351..345349	+	332	89255786	-	FTL_0372	-	glycerol-3-phosphate dehydrogenase
339	 31.84	0	345350..345886	-	178	89255787	-	FTL_0373	-	hypothetical protein
340	 36.32	+1	345891..347261	-	456	89255788	-	FTL_0374	-	DNA repair protein RadA
341	 31.39	0	347269..348039	-	256	89255789	-	FTL_0375	-	hypothetical protein
342	 30.33	0	348036..348635	-	199	89255790	-	FTL_0376	-	hypothetical protein
343	 38.62	+1	348638..349696	-	352	89255791	-	FTL_0377	-	chorismate synthase
344	 29.20	0	349837..350490	-	217	89255792	-	FTL_0378	-	hypothetical protein
345	 35.28	0	350509..351021	-	170	89255793	-	FTL_0379	-	methionine sulfoxide reductase B
346	 40.86	+2	351182..351739	+	185	89255794	-	FTL_0380	-	superoxide dismuate (Cu-Zn) precusor
347	 32.83	0	351743..352534	+	263	89255795	-	FTL_0381	-	hypothetical protein
348	 35.84	0	352509..353903	-	464	89255796	-	FTL_0382	-	amino acid permease
349	 36.64	+1	354053..354415	+	120	89255797	-	FTL_0383	-	mannose-6-phosphate isomerase, fragment
350	 36.69	+1	355654..356844	-	396	89255798	-	FTL_0387	-	aspartate aminotransferase
351	 30.86	0	357047..357934	+	295	89255799	-	FTL_0388	-	cation transporter
352	 35.88	0	358020..359669	+	549	89255800	-	FTL_0389	-	DNA repair protein recN
353	 36.10	+1	359970..361055	-	361	89255801	-	FTL_0390	-	Type IV pili fiber building block protein
354	 31.56	0	360979..361203	-	74	89255802	-	FTL_0391	-	hypothetical protein
355	 31.53	0	362203..362313	-	36	89255803	-	FTL_0392	-	Type IV pili fiber building block protein
356	 33.33	0	362697..363416	+	239	89255804	-	FTL_0393	-	hypothetical protein
357	 37.46	+1	363556..364404	+	282	89255805	-	FTL_0394	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase bifunctional protein
358	 37.36	+1	364624..365667	+	347	89255806	-	FTL_0395	-	phosphoribosylaminoimidazole synthetase
359	 35.97	+1	365667..367979	+	770	89255807	-	FTL_0396	-	fusion protein PurC/PurD
360	 35.24	0	367983..368558	+	191	89255808	-	FTL_0397	-	phosphoribosylglycinamide formyltransferase
361	 39.43	+2	368675..369166	+	163	89255809	-	FTL_0398	-	phosphoribosylaminoimidazole carboxylase,catalyic subunit
362	 36.43	+1	369170..370267	+	365	89255810	-	FTL_0399	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
363	 29.51	0	370444..371070	-	208	89255811	isftu2	FTL_0400	-	transposase
364	 26.23	-1	371278..371643	-	121	89255812	-	FTL_0401	-	Sua5_yciO_yrdC family protein
365	 29.19	0	371704..372234	+	176	89255813	-	FTL_0402	-	intracellular septation protein A family protein
366	 26.98	-1	372308..372559	+	83	89255814	-	FTL_0403	-	hypothetical protein
367	 35.89	+1	372548..373564	-	338	89255815	-	FTL_0404	-	glucose kinase
368	 34.79	0	373658..374410	+	250	89255816	-	FTL_0405	-	menaquinone biosynthesis methyltransferase
369	 30.10	0	374412..374999	+	195	89255817	-	FTL_0406	-	hypothetical protein
370	 33.69	0	374992..376650	+	552	89255818	-	FTL_0407	-	2-polyprenylphenol 6-hydroxylase
371	 32.15	0	376656..376994	+	112	89255819	-	FTL_0408	-	histidine triad (HIT) family protein
372	 31.50	0	377509..378162	-	217	89255820	-	FTL_0409	-	purine/pyrimidine phosphoribosyl transferase family protein
373	 28.74	-1	378140..378967	+	275	89255821	-	FTL_0410	-	hypothetical protein
374	 30.94	0	378969..379844	-	291	89255822	-	FTL_0411	-	hypothetical protein
375	 30.39	0	379923..380771	-	282	89255823	-	FTL_0412	-	UDP-N-acetylenolpyruvoylglucosamine reductase
376	 32.18	0	380779..382083	-	434	89255824	-	FTL_0413	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
377	 35.48	0	382052..383449	-	465	89255825	engA	FTL_0414	-	GTP-binding protein EngA
378	 36.03	+1	383686..384204	-	172	89255826	-	FTL_0415	-	hypothetical protein
379	 29.77	0	384458..385270	+	270	89255827	isftu2	FTL_0416	-	transposase
380	 32.41	0	385054..385880	-	275	89255828	isftu1	FTL_0417	-	transposase
381	 32.53	0	385938..386186	-	82	89255829	-	FTL_0418	-	hypothetical protein
382	 33.88	0	386267..388273	-	668	89255830	-	FTL_0419	-	oligopeptidase A
383	 30.65	0	388365..388736	+	123	89255831	-	FTL_0420	-	hypothetical protein
384	 37.11	+1	388817..389266	+	149	89255832	-	FTL_0421	-	lipoprotein
385	 32.14	0	389927..390430	+	167	89255833	-	FTL_0423	-	hypothetical protein
386	 33.33	0	390463..390930	+	155	89255834	-	FTL_0424	-	lipoprotein
387	 30.97	0	391093..392445	+	450	89255835	-	FTL_0425	-	Type IV pili glycosylation protein
388	 34.47	0	392499..394793	-	764	89255836	-	FTL_0426	-	DNA topoisomerase I
389	 36.14	+1	394992..395633	+	213	89255837	-	FTL_0427	-	chmomosome partition protein A
390	 34.10	0	395626..396540	+	304	89255838	-	FTL_0428	-	chromosome partition protein B
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.