IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
245	 36.39	+1	245623..246243	+	206	89255694	rpsD	FTL_0260	-	30S ribosomal protein S4
246	 33.02	0	246301..247272	+	323	89255695	-	FTL_0261	-	DNA-directed RNA polymerase subunit alpha
247	 35.62	0	247317..247754	+	145	89255696	rplQ	FTL_0262	-	50S ribosomal protein L17
248	 32.29	0	247908..248734	+	275	89255697	isftu1	FTL_0263	-	transposase
249	 25.80	-1	249570..250565	+	331	89255698	-	FTL_0265	-	hypothetical protein
250	 31.56	0	250761..251641	-	293	89255699	isftu1	FTL_0266	-	transposase
251	 32.80	0	251803..253689	+	628	89255700	-	FTL_0267	-	heat shock protein 90
252	 31.56	0	253919..254799	-	293	89255701	isftu1	FTL_0268	-	transposase
253	 38.15	+1	254991..256340	-	449	89255702	-	FTL_0269	-	glutamate dehydrogenase
254	 28.51	-1	256826..257488	+	220	89255703	isftu2	FTL_0270	-	transposase
255	 32.49	0	257786..258376	+	196	89255704	-	FTL_0271	-	hypothetical protein
256	 31.11	0	258389..259558	+	389	89255705	-	FTL_0272	-	diaminopimelate decarboxylase
257	 35.51	0	259570..260949	+	459	89255706	-	FTL_0273	-	glutamate/gamma-aminobutyrate anti-porter
258	 31.24	0	261426..261998	-	190	89255707	-	FTL_0275	-	methylated-DNA--protein-cysteine methyltransferase
259	 31.94	0	262028..262747	+	239	89255708	-	FTL_0276	-	hypothetical protein
260	 33.33	0	262750..264168	+	472	89255709	-	FTL_0277	-	mercuric reductase protein
261	 29.33	0	264165..264764	+	199	89255710	-	FTL_0278	-	hypothetical protein
262	 30.91	0	264761..265090	+	109	89255711	-	FTL_0279	-	hypothetical protein
263	 33.05	0	265160..265876	-	238	89255712	-	FTL_0280	-	amino acid permease, fragment
264	 37.97	+1	266075..267001	+	308	89255713	-	FTL_0281	-	heat shock protein, hsp40
265	 31.98	0	266991..267875	-	294	89255714	-	FTL_0282	-	hypothetical protein
266	 32.92	0	268066..269262	+	398	89255715	-	FTL_0283	-	aromatic amino acid HAAP transporter
267	 28.57	-1	269296..269652	+	118	89255716	-	FTL_0284	-	hypothetical protein
268	 34.10	0	270021..271964	+	647	89255717	-	FTL_0285	-	GTP pyrophosphokinase
269	 34.60	0	272080..272712	-	210	89255718	-	FTL_0286	-	hypothetical protein
270	 32.99	0	272789..273367	-	192	89255719	-	FTL_0287	-	hypothetical protein
271	 28.29	-1	273455..274069	+	204	89255720	-	FTL_0288	-	hypothetical protein
272	 29.61	0	274076..274801	-	241	89255721	-	FTL_0289	-	hypothetical protein
273	 32.42	0	274801..275679	-	292	89255722	-	FTL_0290	-	integrase/recombinase XerC
274	 31.11	0	275689..276900	-	403	89255723	-	FTL_0291	-	aromatic amino acid HAAP transporter
275	 29.95	0	278340..278783	-	147	89255724	-	FTL_0293	-	preprotein translocase subunit SecB
276	 33.25	0	278860..281394	-	844	89255725	-	FTL_0294	-	DNA mismatch repair protein
277	 35.65	0	281561..282508	+	315	89255726	-	FTL_0295	-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
278	 33.33	0	282528..283031	+	167	89255727	-	FTL_0296	-	hypothetical protein
279	 31.26	0	283012..284025	+	337	89255728	-	FTL_0297	-	hypothetical protein
280	 31.80	0	284034..285995	+	653	89255729	-	FTL_0298	-	hypothetical protein
281	 33.33	0	285992..286876	+	294	89255730	murQ	FTL_0299	-	N-acetylmuramic acid-6-phosphate etherase
282	 33.59	0	286878..287273	+	131	89255731	-	FTL_0300	-	hypothetical protein
283	 28.92	-1	287858..288310	+	150	89255732	-	FTL_0301	-	hypothetical protein
284	 29.29	0	288518..289111	+	197	89255733	isftu2	FTL_0302	-	transposase
285	 25.59	-2	289108..289662	+	184	89255734	-	FTL_0303	-	hypothetical protein
286	 32.79	0	290059..291357	-	432	89255735	-	FTL_0304	-	Na+/H+ antiporter
287	 33.20	0	291367..292092	-	241	89255736	-	FTL_0305	-	hypothetical protein
288	 34.83	0	292094..293098	-	334	89255737	-	FTL_0306	-	tryptophanyl-tRNA synthetase
289	 31.22	0	293395..294009	-	204	89255738	-	FTL_0307	-	dephospho-CoA kinase
290	 32.30	0	294207..295274	+	355	89255739	-	FTL_0308	-	hypothetical protein
291	 38.29	+1	295558..298239	+	893	89255740	aceE	FTL_0309	-	pyruvate dehydrogenase subunit E1
292	 38.22	+1	298257..299852	+	531	89255741	-	FTL_0310	-	dihydrolipoamide acetyltransferase
293	 38.92	+1	299866..301278	+	470	89255742	-	FTL_0311	-	dihydrolipoamide dehydrogenase
294	 33.33	0	301298..301432	-	44	89255743	-	FTL_0312	-	transposase
295	 26.24	-1	301517..301657	-	46	89255744	-	FTL_0313	-	hypothetical protein
296	 31.44	0	301648..302528	+	296	89257203	isftu1	FTL_0314	-	transposase
297	 29.48	0	302656..303303	+	215	89255745	-	FTL_0315	-	MutT protein
298	 32.49	0	303321..303674	+	117	89255746	-	FTL_0316	-	arsenate reductase
299	 37.20	+1	303698..304033	-	111	89255747	-	FTL_0317	-	hypothetical protein
300	 35.37	0	304210..304455	-	81	89255748	-	FTL_0318	-	lipoprotein
301	 33.79	0	304533..305846	-	437	89255749	-	FTL_0319	-	hypothetical protein
302	 33.86	0	305982..307499	-	505	89255750	-	FTL_0320	-	aspartate aminotransferase
303	 31.58	0	310408..311661	-	417	89255751	-	FTL_0325	-	OmpA family protein
304	 34.19	0	311853..312317	+	154	89255752	-	FTL_0326	-	FKBP-type 16 kDa peptidyl-prolyl cis-transisomerase
305	 36.89	+1	312298..313254	+	318	89255753	-	FTL_0327	-	IspH protein
306	 34.99	0	313256..313618	+	120	89255754	-	FTL_0328	-	chorismate mutase
307	 31.86	0	313633..314448	+	271	89255755	-	FTL_0329	-	CDP-alcohol phosphatidyltransferase
308	 42.51	+2	314453..314659	-	68	89255756	-	FTL_0330	-	hypothetical protein
309	 34.75	0	314829..315536	+	235	89255757	-	FTL_0331	-	TolQ protein
310	 34.92	0	315552..315992	+	146	89255758	-	FTL_0332	-	TolR protein
311	 34.32	0	315979..316890	+	303	89255759	-	FTL_0333	-	hypothetical protein
312	 32.26	0	316902..318209	+	435	89255760	-	FTL_0334	-	TolB protein precursor
313	 35.37	0	318219..318464	+	81	89255761	-	FTL_0335	-	lipoprotein
314	 34.29	0	318483..319106	+	207	89255762	-	FTL_0336	-	peptidoglycan-associated lipoprotein
315	 25.64	-2	320517..320867	+	116	89255763	-	FTL_0338	-	GCN5-related N-acetyltransferase
316	 31.44	0	321013..321893	+	293	89255764	isftu1	FTL_0339	-	transposase
317	 31.43	0	321865..322074	+	69	89255765	-	FTL_0340	-	hypothetical protein
318	 34.49	0	322181..322786	+	201	89255766	-	FTL_0341	-	deoxyribodipyrimidine photolyase
319	 35.76	0	322844..323338	+	164	89255767	-	FTL_0342	-	deoxyribodipyrimidine photolyase
320	 34.05	0	323554..325083	+	509	89255768	-	FTL_0343	-	hypothetical protein
321	 36.23	+1	325080..325217	+	45	89255769	-	FTL_0344	-	hypothetical protein
322	 30.76	0	325343..326275	+	310	89255770	-	FTL_0345	-	bile acid symporter family protein
323	 26.91	-1	326342..326839	+	165	89255771	-	FTL_0346	-	hypothetical protein
324	 32.30	0	326969..327547	+	192	89255772	-	FTL_0347	-	hypothetical protein
325	 31.22	0	330636..331061	-	141	89255773	-	FTL_0352	-	hypothetical protein
326	 31.44	0	331033..331913	-	293	89255774	isftu1	FTL_0353	-	transposase
327	 28.33	-1	332031..332390	-	119	89255775	-	FTL_0354	-	hypothetical protein
328	 28.65	-1	332404..333258	-	284	89255776	ubiA	FTL_0355	-	prenyltransferase
329	 28.80	-1	333261..333767	-	168	89255777	-	FTL_0356	-	hypothetical protein
330	 39.27	+1	333866..334573	+	235	89255778	-	FTL_0357	-	ribonuclease PH
331	 28.70	-1	334627..334950	-	107	89255779	-	FTL_0358	-	hypothetical protein
332	 33.44	0	335055..335957	-	300	89255780	-	FTL_0359	-	Type IV pili fiber building block protein
333	 32.96	0	336062..337135	-	357	89255781	-	FTL_0360	-	heat shock protein HtpX
334	 32.64	0	337139..337714	-	191	89255782	-	FTL_0361	-	LemA-like protein
335	 29.86	0	340774..341436	+	220	89255783	isftu2	FTL_0367	-	transposase
336	 33.00	0	342870..343169	-	99	89255784	-	FTL_0370	-	arsenical restistance operon repressor
337	 30.43	0	343378..344031	+	217	89255785	-	FTL_0371	-	hypothetical protein
338	 35.94	+1	344351..345349	+	332	89255786	-	FTL_0372	-	glycerol-3-phosphate dehydrogenase
339	 31.84	0	345350..345886	-	178	89255787	-	FTL_0373	-	hypothetical protein
340	 36.32	+1	345891..347261	-	456	89255788	-	FTL_0374	-	DNA repair protein RadA
341	 31.39	0	347269..348039	-	256	89255789	-	FTL_0375	-	hypothetical protein
342	 30.33	0	348036..348635	-	199	89255790	-	FTL_0376	-	hypothetical protein
343	 38.62	+1	348638..349696	-	352	89255791	-	FTL_0377	-	chorismate synthase
344	 29.20	0	349837..350490	-	217	89255792	-	FTL_0378	-	hypothetical protein
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.