IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
212	 34.59	0	227593..228150	+	185	89255661	-	FTL_0227	-	ribosome recycling factor
213	 35.55	0	228234..228956	+	240	89255662	-	FTL_0228	-	undecaprenyl pyrophosphate synthetase
214	 32.83	0	228970..229764	+	264	89255663	-	FTL_0229	-	phosphatidate cytidylyltransferase
215	 37.14	+1	229774..230220	+	148	89255664	dut	FTL_0230	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
216	 34.51	0	230224..230820	+	198	89255665	-	FTL_0231	-	phosphatidylglycerophosphate synthetase
217	 43.20	+2	230955..231329	+	124	89255666	rpsL	FTL_0232	-	30S ribosomal protein S12
218	 39.45	+2	231368..231841	+	157	89255667	-	FTL_0233	-	30S ribosomal protein S7
219	 40.47	+2	231856..233970	+	704	89255668	-	FTL_0234	-	elongation factor G
220	 33.02	0	233991..234308	+	105	89255669	rpsJ	FTL_0235	-	30S ribosomal protein S10
221	 39.49	+2	234412..235044	+	210	89255670	rplC	FTL_0236	-	50S ribosomal protein L3
222	 37.82	+1	235077..235700	+	207	89255671	rplD	FTL_0237	-	50S ribosomal protein L4
223	 35.33	0	235697..235996	+	99	89255672	rplW	FTL_0238	-	50S ribosomal protein L23
224	 39.27	+1	236018..236842	+	274	89255673	rplB	FTL_0239	-	50S ribosomal protein L2
225	 36.56	+1	236857..237135	+	92	89255674	rpsS	FTL_0240	-	30S ribosomal protein S19
226	 36.90	+1	237151..237486	+	111	89255675	rplV	FTL_0241	-	50S ribosomal protein L22
227	 37.65	+1	237501..238172	+	223	89255676	rpsC	FTL_0242	-	30S ribosomal protein S3
228	 42.51	+2	238172..238585	+	137	89255677	rplP	FTL_0243	-	50S ribosomal protein L16
229	 29.35	0	238585..238785	+	66	89255678	-	FTL_0244	-	50S ribosomal protein L29
230	 30.95	0	238798..239049	+	83	89255679	rpsQ	FTL_0245	-	30S ribosomal protein S17
231	 39.84	+2	239141..239509	+	122	89255680	rplN	FTL_0246	-	50S ribosomal protein L14
232	 36.79	+1	239531..239848	+	105	89255681	rplX	FTL_0247	-	50S ribosomal protein L24
233	 33.15	0	239860..240399	+	179	89255682	rplE	FTL_0248	-	50S ribosomal protein L5
234	 34.31	0	240418..240723	+	101	89255683	rpsN	FTL_0249	-	30S ribosomal protein S14
235	 35.84	0	240740..241138	+	132	89255684	rpsH	FTL_0250	-	30S ribosomal protein S8
236	 38.36	+1	241157..241693	+	178	89255685	rplF	FTL_0251	-	50S ribosomal protein L6
237	 36.44	+1	241716..242069	+	117	89255686	rplR	FTL_0252	-	50S ribosomal protein L18
238	 38.92	+1	242097..242597	+	166	89255687	rpsE	FTL_0253	-	30S ribosomal protein S5
239	 34.95	0	242604..242789	+	61	89255688	rpmD	FTL_0254	-	50S ribosomal protein L30
240	 37.27	+1	242796..243227	+	143	89255689	rplO	FTL_0255	-	50S ribosomal protein L15
241	 34.01	0	243238..244563	+	441	89255690	secY	FTL_0256	-	preprotein translocase subunit SecY
242	 34.21	0	244587..244700	+	37	89255691	rpmJ	FTL_0257	-	50S ribosomal protein L36
243	 37.82	+1	244817..245173	+	118	89255692	rpsM	FTL_0258	-	30S ribosomal protein S13
244	 38.46	+1	245212..245601	+	129	89255693	-	FTL_0259	-	30S ribosomal protein S11
245	 36.39	+1	245623..246243	+	206	89255694	rpsD	FTL_0260	-	30S ribosomal protein S4
246	 33.02	0	246301..247272	+	323	89255695	-	FTL_0261	-	DNA-directed RNA polymerase subunit alpha
247	 35.62	0	247317..247754	+	145	89255696	rplQ	FTL_0262	-	50S ribosomal protein L17
248	 32.29	0	247908..248734	+	275	89255697	isftu1	FTL_0263	-	transposase
249	 25.80	-1	249570..250565	+	331	89255698	-	FTL_0265	-	hypothetical protein
250	 31.56	0	250761..251641	-	293	89255699	isftu1	FTL_0266	-	transposase
251	 32.80	0	251803..253689	+	628	89255700	-	FTL_0267	-	heat shock protein 90
252	 31.56	0	253919..254799	-	293	89255701	isftu1	FTL_0268	-	transposase
253	 38.15	+1	254991..256340	-	449	89255702	-	FTL_0269	-	glutamate dehydrogenase
254	 28.51	-1	256826..257488	+	220	89255703	isftu2	FTL_0270	-	transposase
255	 32.49	0	257786..258376	+	196	89255704	-	FTL_0271	-	hypothetical protein
256	 31.11	0	258389..259558	+	389	89255705	-	FTL_0272	-	diaminopimelate decarboxylase
257	 35.51	0	259570..260949	+	459	89255706	-	FTL_0273	-	glutamate/gamma-aminobutyrate anti-porter
258	 31.24	0	261426..261998	-	190	89255707	-	FTL_0275	-	methylated-DNA--protein-cysteine methyltransferase
259	 31.94	0	262028..262747	+	239	89255708	-	FTL_0276	-	hypothetical protein
260	 33.33	0	262750..264168	+	472	89255709	-	FTL_0277	-	mercuric reductase protein
261	 29.33	0	264165..264764	+	199	89255710	-	FTL_0278	-	hypothetical protein
262	 30.91	0	264761..265090	+	109	89255711	-	FTL_0279	-	hypothetical protein
263	 33.05	0	265160..265876	-	238	89255712	-	FTL_0280	-	amino acid permease, fragment
264	 37.97	+1	266075..267001	+	308	89255713	-	FTL_0281	-	heat shock protein, hsp40
265	 31.98	0	266991..267875	-	294	89255714	-	FTL_0282	-	hypothetical protein
266	 32.92	0	268066..269262	+	398	89255715	-	FTL_0283	-	aromatic amino acid HAAP transporter
267	 28.57	-1	269296..269652	+	118	89255716	-	FTL_0284	-	hypothetical protein
268	 34.10	0	270021..271964	+	647	89255717	-	FTL_0285	-	GTP pyrophosphokinase
269	 34.60	0	272080..272712	-	210	89255718	-	FTL_0286	-	hypothetical protein
270	 32.99	0	272789..273367	-	192	89255719	-	FTL_0287	-	hypothetical protein
271	 28.29	-1	273455..274069	+	204	89255720	-	FTL_0288	-	hypothetical protein
272	 29.61	0	274076..274801	-	241	89255721	-	FTL_0289	-	hypothetical protein
273	 32.42	0	274801..275679	-	292	89255722	-	FTL_0290	-	integrase/recombinase XerC
274	 31.11	0	275689..276900	-	403	89255723	-	FTL_0291	-	aromatic amino acid HAAP transporter
275	 29.95	0	278340..278783	-	147	89255724	-	FTL_0293	-	preprotein translocase subunit SecB
276	 33.25	0	278860..281394	-	844	89255725	-	FTL_0294	-	DNA mismatch repair protein
277	 35.65	0	281561..282508	+	315	89255726	-	FTL_0295	-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
278	 33.33	0	282528..283031	+	167	89255727	-	FTL_0296	-	hypothetical protein
279	 31.26	0	283012..284025	+	337	89255728	-	FTL_0297	-	hypothetical protein
280	 31.80	0	284034..285995	+	653	89255729	-	FTL_0298	-	hypothetical protein
281	 33.33	0	285992..286876	+	294	89255730	murQ	FTL_0299	-	N-acetylmuramic acid-6-phosphate etherase
282	 33.59	0	286878..287273	+	131	89255731	-	FTL_0300	-	hypothetical protein
283	 28.92	-1	287858..288310	+	150	89255732	-	FTL_0301	-	hypothetical protein
284	 29.29	0	288518..289111	+	197	89255733	isftu2	FTL_0302	-	transposase
285	 25.59	-2	289108..289662	+	184	89255734	-	FTL_0303	-	hypothetical protein
286	 32.79	0	290059..291357	-	432	89255735	-	FTL_0304	-	Na+/H+ antiporter
287	 33.20	0	291367..292092	-	241	89255736	-	FTL_0305	-	hypothetical protein
288	 34.83	0	292094..293098	-	334	89255737	-	FTL_0306	-	tryptophanyl-tRNA synthetase
289	 31.22	0	293395..294009	-	204	89255738	-	FTL_0307	-	dephospho-CoA kinase
290	 32.30	0	294207..295274	+	355	89255739	-	FTL_0308	-	hypothetical protein
291	 38.29	+1	295558..298239	+	893	89255740	aceE	FTL_0309	-	pyruvate dehydrogenase subunit E1
292	 38.22	+1	298257..299852	+	531	89255741	-	FTL_0310	-	dihydrolipoamide acetyltransferase
293	 38.92	+1	299866..301278	+	470	89255742	-	FTL_0311	-	dihydrolipoamide dehydrogenase
294	 33.33	0	301298..301432	-	44	89255743	-	FTL_0312	-	transposase
295	 26.24	-1	301517..301657	-	46	89255744	-	FTL_0313	-	hypothetical protein
296	 31.44	0	301648..302528	+	296	89257203	isftu1	FTL_0314	-	transposase
297	 29.48	0	302656..303303	+	215	89255745	-	FTL_0315	-	MutT protein
298	 32.49	0	303321..303674	+	117	89255746	-	FTL_0316	-	arsenate reductase
299	 37.20	+1	303698..304033	-	111	89255747	-	FTL_0317	-	hypothetical protein
300	 35.37	0	304210..304455	-	81	89255748	-	FTL_0318	-	lipoprotein
301	 33.79	0	304533..305846	-	437	89255749	-	FTL_0319	-	hypothetical protein
302	 33.86	0	305982..307499	-	505	89255750	-	FTL_0320	-	aspartate aminotransferase
303	 31.58	0	310408..311661	-	417	89255751	-	FTL_0325	-	OmpA family protein
304	 34.19	0	311853..312317	+	154	89255752	-	FTL_0326	-	FKBP-type 16 kDa peptidyl-prolyl cis-transisomerase
305	 36.89	+1	312298..313254	+	318	89255753	-	FTL_0327	-	IspH protein
306	 34.99	0	313256..313618	+	120	89255754	-	FTL_0328	-	chorismate mutase
307	 31.86	0	313633..314448	+	271	89255755	-	FTL_0329	-	CDP-alcohol phosphatidyltransferase
308	 42.51	+2	314453..314659	-	68	89255756	-	FTL_0330	-	hypothetical protein
309	 34.75	0	314829..315536	+	235	89255757	-	FTL_0331	-	TolQ protein
310	 34.92	0	315552..315992	+	146	89255758	-	FTL_0332	-	TolR protein
311	 34.32	0	315979..316890	+	303	89255759	-	FTL_0333	-	hypothetical protein
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.