IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
132	 32.18	0	149528..149701	-	57	89255581	-	FTL_0144	-	hypothetical protein
133	 33.94	0	149830..151629	+	599	89255582	-	FTL_0145	-	ABC transporter, membrane protein
134	 36.90	+1	151648..152964	+	438	89255583	-	FTL_0146	-	ABC transporter, ATP-binding protein
135	 32.62	0	153051..154589	+	512	89255584	-	FTL_0147	-	hypothetical protein
136	 32.59	0	154695..156569	+	624	89255585	-	FTL_0148	-	Sodium/hydrogen exchanger (antiporter) family protein
137	 37.04	+1	156554..157093	+	179	89255586	-	FTL_0149	-	carbonic anhydrase
138	 30.64	0	157020..157688	+	222	89255587	-	FTL_0150	-	lipoprotein releasing system, subunit B, outer membrane lipoprotein
139	 31.04	0	157676..158503	+	275	89255588	-	FTL_0151	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
140	 32.09	0	158692..159012	+	106	89255589	-	FTL_0152	-	hypothetical protein
141	 31.56	0	159036..159916	+	293	89255590	isftu1	FTL_0153	-	transposase
142	 35.84	0	160758..161753	-	331	89255591	-	FTL_0156	-	phosphate transport protein
143	 29.98	0	161771..162427	-	218	89255592	-	FTL_0157	-	hypothetical protein
144	 33.74	0	162734..164209	+	491	89255593	-	FTL_0158	-	acid phosphatase (precursor)
145	 36.04	+1	164216..165028	-	270	89255594	-	FTL_0159	-	hydrolase subunit
146	 34.79	0	165112..165729	-	205	89255595	-	FTL_0160	-	hypothetical protein
147	 30.47	0	166392..167090	-	232	89255596	-	FTL_0162	-	hypothetical protein
148	 37.59	+1	167216..167356	-	46	89255597	-	FTL_0163	-	MFS transporter
149	 31.56	0	167422..168302	-	293	89255598	isftu1	FTL_0164	-	transposase
150	 38.27	+1	168385..168546	-	53	89255599	-	FTL_0165	-	dicarboxylate MFS transporter
151	 34.53	0	168662..169498	-	278	89255600	-	FTL_0166	-	universal stress protein
152	 31.29	0	169574..172315	-	913	89255601	-	FTL_0167	-	DNA/RNA helicase
153	 34.13	0	172299..173051	-	250	89255602	-	FTL_0168	-	hypothetical protein
154	 34.57	0	173151..173714	-	187	89255603	-	FTL_0169	-	hypothetical protein
155	 30.19	0	174113..174526	+	137	89255604	-	FTL_0170	-	hypothetical protein
156	 33.79	0	174537..175409	-	290	89255605	-	FTL_0171	-	tetrapyrrole methyltransferase family protein
157	 33.85	0	175402..176757	-	451	89255606	-	FTL_0172	-	UDP-N-acetylmuramate--alanine ligase
158	 34.63	0	176824..177597	-	257	89255607	-	FTL_0173	-	shikimate 5-dehydrogenase
159	 39.00	+1	177724..178182	+	152	89255608	-	FTL_0174	-	hypothetical protein
160	 36.30	+1	178274..178408	+	44	89255609	rpmH	FTL_0175	-	50S ribosomal protein L34
161	 31.92	0	178398..178751	+	117	89255610	-	FTL_0176	-	ribonuclease P protein component
162	 33.33	0	178727..178975	+	82	89255611	-	FTL_0177	-	hypothetical protein
163	 33.51	0	178984..180639	+	551	89255612	-	FTL_0178	-	inner-membrane protein
164	 32.67	0	180646..181545	+	299	89255613	-	FTL_0179	-	acyltransferase
165	 33.01	0	181606..182529	+	307	89255614	-	FTL_0180	-	acyltransferase
166	 36.27	+1	182542..182949	+	135	89255615	-	FTL_0181	-	Type IV pili fiber building block protein
167	 34.56	0	182989..183558	+	189	89255616	-	FTL_0182	-	elongation factor P
168	 34.08	0	183561..184097	+	178	89255617	-	FTL_0183	-	oligoribonuclease
169	 35.90	+1	184132..184326	+	64	89255618	-	FTL_0184	-	hypothetical protein
170	 31.44	0	184350..185230	+	293	89255619	isftu1	FTL_0185	-	transposase
171	 30.03	0	185208..186326	-	372	89255620	-	FTL_0186	-	hypothetical protein
172	 28.48	-1	186394..187134	-	246	89255621	-	FTL_0187	-	cyclohexadienyl dehydratase precursor,psueodogene
173	 35.68	0	187327..188520	-	397	89255622	-	FTL_0188	-	cytochrome d terminal oxidase, polypeptide subunit II
174	 36.92	+1	188531..190285	-	584	89255623	-	FTL_0189	-	cytochrome d terminal oxidase, polypeptide subunit I
175	 32.97	0	190738..192105	-	455	89255624	-	FTL_0190	-	major facilitator transporter
176	 35.66	0	192465..193367	+	300	89255625	-	FTL_0191	-	cytochrome O ubiquinol oxidase subunit II
177	 37.52	+1	193406..195436	+	676	89255626	-	FTL_0192	-	cytochrome O ubiquinol oxidase subunit I
178	 33.83	0	195433..196035	+	200	89255627	-	FTL_0193	-	cytochrome O ubiquinol oxidase, subunit III
179	 35.44	0	196037..196369	+	110	89255628	-	FTL_0194	-	cytochrome O ubiquinol oxidase subunit IV
180	 30.74	0	196400..197248	+	282	89255629	-	FTL_0195	-	Protoheme IX farnesyltransferase
181	 35.63	0	197393..198436	-	347	89255630	-	FTL_0196	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
182	 31.03	0	198511..199206	-	231	89255631	-	FTL_0197	-	hypothetical protein
183	 34.51	0	199206..200057	-	283	89255632	-	FTL_0198	-	pyridoxal kinase
184	 31.03	0	200064..200498	-	144	89255633	-	FTL_0199	-	hypothetical protein
185	 37.30	+1	200644..201600	+	318	89255634	-	FTL_0200	-	methanol dehydrogenase regulatory protein
186	 32.57	0	201613..202524	+	303	89255635	-	FTL_0201	-	hypothetical protein
187	 32.49	0	202514..202990	+	158	89255636	-	FTL_0202	-	hypothetical protein
188	 34.43	0	202987..203988	+	333	89255637	-	FTL_0203	-	hypothetical protein
189	 36.34	+1	203990..204988	+	332	89255638	-	FTL_0204	-	TPR repeat-containing protein
190	 30.75	0	204979..205713	+	244	89255639	-	FTL_0205	-	TPR repeat-containing protein
191	 32.47	0	205703..207328	+	541	89255640	-	FTL_0206	-	hypothetical protein
192	 35.58	0	207335..208003	+	222	89255641	-	FTL_0207	-	pyrrolidone-carboxylate peptidase
193	 28.36	-1	208011..208493	+	160	89255642	-	FTL_0208	-	putative cytochrome c-type biogenesis protein
194	 31.28	0	208527..208964	+	145	89255643	-	FTL_0209	-	DNA polymerase III (chi subunit) protein
195	 36.45	+1	209096..211855	+	919	89255644	valS	FTL_0210	-	valyl-tRNA synthetase
196	 27.25	-1	211884..212771	+	295	89255645	-	FTL_0211	-	hypothetical protein
197	 28.59	-1	212726..213652	+	308	89255646	-	FTL_0212	-	hypothetical protein
198	 29.43	0	213927..214208	+	93	89255647	-	FTL_0213	-	hypothetical protein
199	 36.53	+1	214205..215362	-	385	89255648	-	FTL_0214	-	L-lactate dehydrogenase
200	 32.31	0	215352..216035	-	227	89255649	-	FTL_0215	-	dihydropteridine reductase
201	 36.51	+1	216175..216552	+	125	89255650	-	FTL_0216	-	MutT/nudix family protein
202	 35.49	0	216725..218116	+	463	89255651	fumC	FTL_0217	-	fumarate hydratase
203	 35.18	0	218246..219652	+	468	89255652	-	FTL_0218	-	glutamyl-tRNA synthetase
204	 30.70	0	219933..220616	+	227	89255653	-	FTL_0219	-	hypothetical protein
205	 29.24	0	220548..221231	-	227	89255654	isftu2	FTL_0220	-	transposase
206	 32.64	0	221674..222966	+	430	89255655	-	FTL_0221	-	amino acid permease
207	 34.09	0	223460..224383	-	307	89255656	-	FTL_0222	-	hypothetical protein
208	 27.07	-1	224465..225007	-	180	89255657	-	FTL_0223	-	dihydrofolate reductase type I
209	 35.97	+1	225200..225919	+	239	89255658	rpsB	FTL_0224	-	30S ribosomal protein S2
210	 38.85	+1	225941..226810	+	289	89255659	tsf	FTL_0225	-	elongation factor Ts
211	 36.67	+1	226814..227563	+	249	89255660	-	FTL_0226	-	uridylate kinase
212	 34.59	0	227593..228150	+	185	89255661	-	FTL_0227	-	ribosome recycling factor
213	 35.55	0	228234..228956	+	240	89255662	-	FTL_0228	-	undecaprenyl pyrophosphate synthetase
214	 32.83	0	228970..229764	+	264	89255663	-	FTL_0229	-	phosphatidate cytidylyltransferase
215	 37.14	+1	229774..230220	+	148	89255664	dut	FTL_0230	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
216	 34.51	0	230224..230820	+	198	89255665	-	FTL_0231	-	phosphatidylglycerophosphate synthetase
217	 43.20	+2	230955..231329	+	124	89255666	rpsL	FTL_0232	-	30S ribosomal protein S12
218	 39.45	+2	231368..231841	+	157	89255667	-	FTL_0233	-	30S ribosomal protein S7
219	 40.47	+2	231856..233970	+	704	89255668	-	FTL_0234	-	elongation factor G
220	 33.02	0	233991..234308	+	105	89255669	rpsJ	FTL_0235	-	30S ribosomal protein S10
221	 39.49	+2	234412..235044	+	210	89255670	rplC	FTL_0236	-	50S ribosomal protein L3
222	 37.82	+1	235077..235700	+	207	89255671	rplD	FTL_0237	-	50S ribosomal protein L4
223	 35.33	0	235697..235996	+	99	89255672	rplW	FTL_0238	-	50S ribosomal protein L23
224	 39.27	+1	236018..236842	+	274	89255673	rplB	FTL_0239	-	50S ribosomal protein L2
225	 36.56	+1	236857..237135	+	92	89255674	rpsS	FTL_0240	-	30S ribosomal protein S19
226	 36.90	+1	237151..237486	+	111	89255675	rplV	FTL_0241	-	50S ribosomal protein L22
227	 37.65	+1	237501..238172	+	223	89255676	rpsC	FTL_0242	-	30S ribosomal protein S3
228	 42.51	+2	238172..238585	+	137	89255677	rplP	FTL_0243	-	50S ribosomal protein L16
229	 29.35	0	238585..238785	+	66	89255678	-	FTL_0244	-	50S ribosomal protein L29
230	 30.95	0	238798..239049	+	83	89255679	rpsQ	FTL_0245	-	30S ribosomal protein S17
231	 39.84	+2	239141..239509	+	122	89255680	rplN	FTL_0246	-	50S ribosomal protein L14
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.