IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1645	 31.12	0	1767450..1768712	+	420	89257093	-	FTL_1833	-	hypothetical protein
1646	 32.70	0	1768705..1769958	+	417	89257094	-	FTL_1834	-	diaminopimelate decarboxylase
1647	 33.92	0	1769974..1771164	+	396	89257095	-	FTL_1835	-	hypothetical protein
1648	 33.92	0	1771250..1772779	+	509	89257096	-	FTL_1836	-	hypothetical protein
1649	 26.45	-1	1772827..1773189	+	120	89257097	-	FTL_1837	-	hypothetical protein
1650	 35.31	0	1773438..1773740	+	100	89257098	-	FTL_1838	-	hypothetical protein
1651	 30.43	0	1773767..1774318	+	183	89257099	-	FTL_1839	-	lipase/acyltransferase
1652	 30.15	0	1774334..1774741	-	135	89257100	-	FTL_1840	-	hypothetical protein
1653	 36.88	+1	1774756..1776165	-	469	89257101	gatB	FTL_1841	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1654	 37.41	+1	1776180..1777625	-	481	89257102	-	FTL_1842	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1655	 31.91	0	1777634..1777915	-	93	89257103	-	FTL_1843	-	Glu-tRNAGln amidotransferase C subunit
1656	 34.97	0	1777998..1778486	-	162	89257104	-	FTL_1844	-	secretion protein
1657	 36.82	+1	1778553..1779068	-	171	89257105	-	FTL_1845	-	RND efflux membrane fusion protein
1658	 29.00	-1	1779193..1779723	-	176	89257106	-	FTL_1846	-	hypothetical protein
1659	 27.78	-1	1779823..1780290	-	155	89257107	-	FTL_1847	-	toxin secretion ABC transporter ATP-binding protein
1660	 28.15	-1	1780211..1780615	-	134	89257108	-	FTL_1848	-	hypothetical protein
1661	 31.26	0	1780702..1781280	-	192	89257109	-	FTL_1849	-	hypothetical protein
1662	 35.49	0	1781314..1782612	-	432	89257110	-	FTL_1850	-	adenylosuccinate lyase
1663	 29.68	0	1782785..1783414	-	209	89257111	isftu2	FTL_1851	-	transposase
1664	 32.83	0	1783795..1784193	+	132	89257112	-	FTL_1852	-	hypothetical protein
1665	 30.40	0	1784436..1785218	+	260	89257113	-	FTL_1853	-	lipoprotein
1666	 33.91	0	1785236..1786096	-	286	89257114	-	FTL_1854	-	hypothetical protein
1667	 39.07	+1	1788213..1792085	-	1290	89257115	-	FTL_1860	-	phosphoribosylformylglycinamidine synthase
1668	 36.75	+1	1792085..1793575	-	496	89257116	-	FTL_1861	-	amidophosphoribosyltransferase
1669	 35.24	0	1793669..1793878	-	69	89257117	-	FTL_1862	-	hypothetical protein
1670	 37.88	+1	1793853..1794974	-	373	89257118	-	FTL_1863	-	glutamate decarboxylase
1671	 31.93	0	1794985..1795626	-	213	89257119	-	FTL_1864	-	hypothetical protein
1672	 35.95	+1	1795635..1797164	-	509	89257120	-	FTL_1865	-	outer membrane protein tolC precursor
1673	 33.49	0	1797173..1797793	-	206	89257121	-	FTL_1866	-	protein-L-isoaspartate O-methyltransferase
1674	 36.94	+1	1798113..1799444	+	443	89257122	-	FTL_1867	-	protease yegQ
1675	 36.21	+1	1799484..1800665	-	393	89257123	-	FTL_1868	-	multidrug resistance protein, membrane located
1676	 35.29	0	1800840..1802267	+	475	89257124	-	FTL_1869	-	Na+/H+ antiporter
1677	 33.07	0	1803907..1805781	-	624	89257125	-	FTL_1873	-	amino acid transporter
1678	 36.92	+1	1805788..1806792	-	334	89257126	obgE	FTL_1874	-	GTPase ObgE
1679	 31.75	0	1806868..1808064	-	398	89257127	-	FTL_1875	-	aromatic amino acid HAAP transporter
1680	 42.11	+2	1808659..1809114	-	151	89257128	-	FTL_1876	-	outer membrane associated protein, fragment
1681	 31.88	0	1810079..1811656	-	525	89257129	-	FTL_1878	-	two component sensor protein kdpD
1682	 34.71	0	1811748..1812761	-	337	89257130	-	FTL_1879	-	osmosensitive K+ channel His kinase sensor
1683	 33.15	0	1812865..1813419	-	184	89257131	-	FTL_1880	-	potassium-transporting ATPase C chain
1684	 36.87	+1	1813436..1814341	-	301	89257132	-	FTL_1881	-	haloacid dehalogenase-like hydrolase
1685	 35.44	0	1814370..1815413	-	347	89257133	-	FTL_1882	-	potassium-transporting ATPase B chain
1686	 33.28	0	1815423..1817144	-	573	89257134	-	FTL_1883	-	potassium-transporting ATPase subunit A
1687	 38.40	+1	1817451..1817687	-	78	89257135	-	FTL_1884	-	hypothetical protein
1688	 30.80	0	1817620..1818408	-	262	89257136	isftu2	FTL_1885	-	transposase
1689	 32.17	0	1818626..1819455	-	276	89257137	isftu1	FTL_1886	-	transposase
1690	 33.58	0	1819695..1820105	-	136	89257138	-	FTL_1887	-	3-isopropylmalate dehydrogenase
1691	 32.28	0	1820693..1821262	-	189	89257139	-	FTL_1888	-	3-isopropylmalate dehydratase small subunit
1692	 36.54	+1	1821265..1822668	-	467	89257140	-	FTL_1889	-	isopropylmalate isomerase large subunit
1693	 31.56	0	1822946..1823826	+	293	89257141	isftu1	FTL_1891	-	transposase
1694	 25.80	-1	1824022..1825017	-	331	89257142	-	FTL_1892	-	hypothetical protein
1695	 30.35	0	1825374..1825910	+	178	89257143	-	FTL_1894	-	transposase
1696	 32.69	0	1826422..1827819	-	465	89257144	-	FTL_1896	-	hypothetical protein
1697	 32.37	0	1827983..1828501	-	172	89257145	-	FTL_1897	-	outer membrane lipoprotein
1698	 30.67	0	1828587..1829564	+	325	89257146	-	FTL_1898	-	DNA polymerase III, delta subunit
1699	 38.34	+1	1829684..1830721	+	345	89257147	-	FTL_1899	-	glutamine synthetase
1700	 34.50	0	1830803..1832344	+	513	89257148	-	FTL_1900	-	L-glutaminase
1701	 25.70	-2	1832353..1833138	+	261	89257149	-	FTL_1901	-	hypothetical protein
1702	 30.94	0	1833326..1833868	+	180	89257150	-	FTL_1902	-	hypothetical protein
1703	 35.83	0	1834253..1835935	-	560	89257151	-	FTL_1903	-	lysyl-tRNA synthetase
1704	 38.75	+1	1836113..1837090	-	325	89257152	-	FTL_1904	-	peptide chain release factor 2
1705	 32.60	0	1837363..1839000	+	545	89257153	-	FTL_1905	-	DNA polymerase III, gamma/tau subunits
1706	 34.84	0	1839014..1839874	-	286	89257154	lpxC	FTL_1906	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1707	 38.92	+1	1839897..1841042	-	381	89257155	-	FTL_1907	-	cell division protein FtsZ
1708	 36.42	+1	1841086..1842348	-	420	89257156	-	FTL_1908	-	cell division protein FtsA
1709	 28.95	-1	1842450..1843133	-	227	89257157	-	FTL_1909	-	cell division protein FtsQ
1710	 37.71	+1	1843130..1844020	-	296	89257158	-	FTL_1910	-	D-alanine--D-alanine ligase B
1711	 35.28	0	1844024..1844485	-	153	89257159	-	FTL_1911	-	zinc-binding domain-containing protein
1712	 36.09	+1	1844633..1846303	+	556	89257160	rpsA	FTL_1912	-	30S ribosomal protein S1
1713	 29.65	0	1846420..1846962	+	180	89257161	-	FTL_1913	-	Sua5/YciO/YrdC family protein
1714	 29.61	0	1847060..1847596	+	178	89257162	-	FTL_1914	-	hypothetical protein
1715	 30.30	0	1847982..1848872	-	296	89257163	-	FTL_1915	-	acetyltransferase
1716	 29.61	0	1848973..1850988	-	671	89257164	-	FTL_1916	-	competence-related protein
1717	 27.86	-1	1851152..1851973	+	273	89257165	-	FTL_1917	-	30S ribosomal protein S6 modification protein-related protein
1718	 30.30	0	1851946..1852308	+	120	89257166	-	FTL_1918	-	ribosomal protein S6 modification protein-related protein
1719	 34.48	0	1854557..1855339	+	260	89257167	-	FTL_1921	-	ABC transporter, ATP-binding protein
1720	 28.77	-1	1855333..1855902	-	189	89257168	-	FTL_1922	-	YggT family protein
1721	 35.78	0	1856017..1856832	-	271	89257169	-	FTL_1923	-	hypothetical protein
1722	 31.44	0	1857257..1858137	-	293	89257170	isftu1	FTL_1925	-	transposase
1723	 30.72	0	1858199..1858657	-	152	89257171	isftu2	FTL_1926	-	transposase
1724	 36.50	+1	1860055..1861602	-	515	89257172	-	FTL_1929	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1725	 35.35	0	1861779..1863065	+	428	89257173	-	FTL_1930	-	adenylosuccinate synthetase
1726	 32.40	0	1863069..1863602	+	177	89257174	-	FTL_1931	-	hypoxanthine-guanine phosphoribosyltransferase
1727	 32.64	0	1864432..1865295	-	287	89257175	-	FTL_1934	-	permease of ABC transporter
1728	 32.60	0	1865216..1865893	-	225	89257176	-	FTL_1935	-	ABC transporter, ATP-binding protein
1729	 34.53	0	1865895..1866812	-	305	89257177	-	FTL_1936	-	periplasmic solute binding family protein
1730	 38.28	+1	1868224..1868688	-	154	89257178	-	FTL_1939	-	outer membrane lipoprotein
1731	 39.70	+2	1868699..1869295	-	198	89257179	-	FTL_1940	-	trp repressor binding protein
1732	 29.12	0	1869302..1870489	+	395	89257180	-	FTL_1941	-	tRNA processing ribonuclease BN
1733	 30.38	0	1870508..1871083	+	191	89257181	-	FTL_1942	-	transport protein
1734	 32.59	0	1871080..1873233	+	717	89257182	-	FTL_1943	-	primosomal protein N'
1735	 31.44	0	1873363..1874243	+	293	89257183	isftu1	FTL_1944	-	transposase
1736	 32.18	0	1874376..1874636	-	86	89257184	-	FTL_1945	-	hypothetical protein
1737	 27.68	-1	1874771..1875124	-	117	89257185	-	FTL_1946	-	hypothetical protein
1738	 38.15	+1	1875078..1876757	-	559	89257186	-	FTL_1947	-	putative ABC transporter ATP-binding protein
1739	 29.68	0	1876925..1878211	+	428	89257187	-	FTL_1948	-	major facilitator transporter
1740	 22.54	-2	1878510..1878722	-	70	89257188	-	FTL_1949	-	hypothetical protein
1741	 30.28	0	1878768..1879748	+	326	89257189	-	FTL_1950	-	hypothetical protein
1742	 30.43	0	1879755..1880030	-	91	89257190	-	FTL_1951	-	amino acid transporter LysE
1743	 27.52	-1	1882141..1882467	+	108	89257191	-	FTL_1954	-	hypothetical protein
1744	 32.40	0	1883263..1885839	-	858	89257192	-	FTL_1956	-	aminopeptidase N
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.