IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1567	 39.11	+1	1682001..1682519	-	172	89257015	rplJ	FTL_1746	-	50S ribosomal protein L10
1568	 37.48	+1	1682689..1683387	-	232	89257016	rplA	FTL_1747	-	50S ribosomal protein L1
1569	 38.16	+1	1683387..1683821	-	144	89257017	rplK	FTL_1748	-	50S ribosomal protein L11
1570	 38.76	+1	1683890..1684423	-	177	89257018	-	FTL_1749	-	transcription antitermination protein nusG
1571	 34.18	0	1684439..1684909	-	156	161353779	secE	FTL_1750	-	preprotein translocase subunit SecE
1572	 41.94	+2	1685101..1686285	-	394	89257020	-	FTL_1751	-	elongation factor Tu
1573	 33.09	0	1686750..1687997	-	415	89257021	-	FTL_1752	-	helicase
1574	 34.34	0	1688164..1688661	-	165	89257022	-	FTL_1753	-	ion channel protein, fragment
1575	 27.73	-1	1688639..1689352	-	237	89257023	-	FTL_1754	-	hypothetical protein
1576	 38.69	+1	1689356..1690120	-	254	89257024	-	FTL_1755	-	glycerol uptake facilitator protein
1577	 33.79	0	1690130..1691662	-	510	89257025	-	FTL_1756	-	anaerobic glycerol-3-phosphate dehydrogenase
1578	 31.56	0	1691978..1692858	+	293	89257026	isftu1	FTL_1757	-	transposase
1579	 31.23	0	1692836..1693120	-	94	89257027	-	FTL_1758	-	hypothetical protein
1580	 32.63	0	1693508..1694788	-	426	89257028	-	FTL_1759	-	hypothetical protein
1581	 33.52	0	1694792..1695319	-	175	89257029	-	FTL_1760	-	hypothetical protein
1582	 33.63	0	1695347..1695682	-	111	89257030	-	FTL_1761	-	hypothetical protein
1583	 31.79	0	1695821..1697248	+	475	89257031	-	FTL_1762	-	sensor histidine kinase
1584	 32.20	0	1697245..1698126	-	293	89257032	-	FTL_1763	-	hypothetical protein
1585	 30.32	0	1699742..1700704	+	320	89257033	-	FTL_1765	-	cytochrome oxidase bd-II, subunit II
1586	 25.06	-2	1700715..1701149	+	144	89257034	-	FTL_1766	-	hypothetical protein
1587	 37.44	+1	1702224..1702832	-	202	89257035	-	FTL_1770	-	Type IV pili nucleotide-binding protein
1588	 32.22	0	1702893..1703252	-	119	89257036	-	FTL_1771	-	twitching motility protein PilT
1589	 37.06	+1	1703346..1706159	-	937	89257037	-	FTL_1772	-	aconitate hydratase
1590	 30.41	0	1706264..1707049	-	261	89257038	-	FTL_1773	-	hypothetical protein
1591	 27.25	-1	1707119..1707496	+	125	89257039	-	FTL_1774	-	hypothetical protein
1592	 30.71	0	1707501..1708643	+	380	89257040	-	FTL_1775	-	oxygen-independent coproporphyrinogen III oxidase
1593	 33.55	0	1708640..1709092	-	150	89257041	-	FTL_1776	-	hypothetical protein
1594	 38.70	+1	1710322..1710675	-	117	89257042	secG	FTL_1779	-	preprotein translocase subunit SecG
1595	 34.25	0	1710663..1711424	-	253	89257043	-	FTL_1780	-	triosephosphate isomerase
1596	 34.68	0	1711427..1712758	-	443	89257044	-	FTL_1781	-	phosphoglucosamine mutase
1597	 38.64	+1	1712769..1713296	-	175	89257045	-	FTL_1782	-	adenine phosphoribosyltransferase
1598	 38.10	+1	1713336..1714805	-	489	89257046	-	FTL_1783	-	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex
1599	 36.07	+1	1714831..1717644	-	937	89257047	kgd	FTL_1784	-	alpha-ketoglutarate decarboxylase
1600	 35.90	+1	1717674..1718375	-	233	89257048	sdhB	FTL_1785	-	succinate dehydrogenase iron-sulfur subunit
1601	 39.97	+2	1718393..1720186	-	597	89257049	-	FTL_1786	-	succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
1602	 34.42	0	1720199..1720567	-	122	89257050	-	FTL_1787	-	succinate dehydrogenase hydrophobic membrane anchor protein
1603	 35.90	+1	1720543..1720932	-	129	89257051	-	FTL_1788	-	succinate dehydrogenase, cytochrome b556
1604	 36.51	+1	1721274..1722533	+	419	89257052	-	FTL_1789	-	citrate synthase
1605	 32.70	0	1722622..1723887	+	421	89257053	-	FTL_1790	-	major facilitator superfamily tranporter
1606	 34.02	0	1724094..1724672	-	192	89257054	-	FTL_1791	-	superoxide dismutase
1607	 35.15	0	1724808..1725137	+	109	89257055	-	FTL_1792	-	glutaredoxin-like protein
1608	 31.93	0	1725154..1727997	-	947	89257056	-	FTL_1793	-	hypothetical protein
1609	 38.13	+1	1728208..1728645	-	145	89257057	-	FTL_1794	-	F0F1 ATP synthase subunit epsilon
1610	 38.63	+1	1728658..1730034	-	458	89257058	-	FTL_1795	-	F0F1 ATP synthase subunit beta
1611	 34.89	0	1730044..1730940	-	298	89257059	-	FTL_1796	-	F0F1 ATP synthase subunit gamma
1612	 38.20	+1	1730955..1732496	-	513	89257060	-	FTL_1797	-	F0F1 ATP synthase subunit alpha
1613	 32.57	0	1732515..1733039	-	174	89257061	-	FTL_1798	-	F0F1 ATP synthase subunit delta
1614	 37.58	+1	1733059..1733529	-	156	89257062	-	FTL_1799	-	F0F1 ATP synthase subunit B
1615	 40.52	+2	1733575..1733880	-	101	89257063	-	FTL_1800	-	F0F1 ATP synthase subunit C
1616	 37.12	+1	1733931..1734722	-	263	89257064	-	FTL_1801	-	F0F1 ATP synthase subunit A
1617	 26.85	-1	1734775..1735206	-	143	89257065	-	FTL_1802	-	hypothetical protein
1618	 35.02	0	1735283..1736587	+	434	89257066	-	FTL_1803	-	major facilitator transporter
1619	 34.09	0	1736589..1737518	-	309	89257067	-	FTL_1804	-	ribosomal large subunit pseudouridine synthase C
1620	 29.49	0	1737511..1738578	-	355	89257068	-	FTL_1805	-	ATPase
1621	 33.87	0	1738581..1739879	-	432	89257069	-	FTL_1806	-	major facilitator transporter
1622	 34.60	0	1739886..1741151	-	421	89257070	hisS	FTL_1807	-	histidyl-tRNA synthetase
1623	 32.41	0	1741159..1741590	-	143	89257071	-	FTL_1808	-	ribosome-binding factor A
1624	 37.90	+1	1741593..1744133	-	846	89257072	infB	FTL_1809	-	translation initiation factor IF-2
1625	 34.08	0	1744172..1745641	-	489	89257073	nusA	FTL_1810	-	transcription elongation factor NusA
1626	 35.32	0	1745659..1746111	-	150	89257074	-	FTL_1811	-	hypothetical protein
1627	 35.75	0	1746337..1747371	-	344	89257075	-	FTL_1812	-	uroporphyrinogen decarboxylase
1628	 31.44	0	1748863..1749743	-	293	89257076	isftu1	FTL_1815	-	transposase
1629	 35.26	0	1750154..1751605	-	483	89257077	-	FTL_1817	-	NADH dehydrogenase I, N subunit
1630	 36.04	+1	1751621..1753210	-	529	89257078	-	FTL_1818	-	NADH dehydrogenase I, M subunit
1631	 34.98	0	1753236..1755245	-	669	89257079	-	FTL_1819	-	NADH dehydrogenase I, L subunit
1632	 31.76	0	1755255..1755572	-	105	89257080	-	FTL_1820	-	NADH dehydrogenase I, K subunit
1633	 34.98	0	1755565..1756170	-	201	89257081	-	FTL_1821	-	NADH dehydrogenase I, J subunit
1634	 34.97	0	1756175..1756663	-	162	89257082	-	FTL_1822	-	NADH dehydrogenase subunit I
1635	 36.60	+1	1756677..1757687	-	336	89257083	-	FTL_1823	-	NADH dehydrogenase I, H subunit
1636	 36.42	+1	1757689..1760055	-	788	89257084	-	FTL_1824	-	NADH dehydrogenase subunit G
1637	 40.39	+2	1760073..1761347	-	424	89257085	-	FTL_1825	-	NADH dehydrogenase I, F subunit
1638	 36.20	+1	1761354..1761842	-	162	89257086	-	FTL_1826	-	NADH dehydrogenase I, E subunit
1639	 38.68	+1	1761852..1763105	-	417	89257087	-	FTL_1827	-	NADH dehydrogenase subunit D
1640	 36.59	+1	1763127..1763771	-	214	89257088	-	FTL_1828	-	NADH dehydrogenase I
1641	 43.40	+2	1763774..1764250	-	158	89257089	-	FTL_1829	-	NADH dehydrogenase subunit B
1642	 35.59	0	1764241..1764639	-	132	89257090	-	FTL_1830	-	NADH dehydrogenase I, A subunit
1643	 32.86	0	1764848..1765270	+	140	89257091	-	FTL_1831	-	ferric uptake regulation protein
1644	 32.55	0	1765524..1767443	+	639	89257092	-	FTL_1832	-	hypothetical protein
1645	 31.12	0	1767450..1768712	+	420	89257093	-	FTL_1833	-	hypothetical protein
1646	 32.70	0	1768705..1769958	+	417	89257094	-	FTL_1834	-	diaminopimelate decarboxylase
1647	 33.92	0	1769974..1771164	+	396	89257095	-	FTL_1835	-	hypothetical protein
1648	 33.92	0	1771250..1772779	+	509	89257096	-	FTL_1836	-	hypothetical protein
1649	 26.45	-1	1772827..1773189	+	120	89257097	-	FTL_1837	-	hypothetical protein
1650	 35.31	0	1773438..1773740	+	100	89257098	-	FTL_1838	-	hypothetical protein
1651	 30.43	0	1773767..1774318	+	183	89257099	-	FTL_1839	-	lipase/acyltransferase
1652	 30.15	0	1774334..1774741	-	135	89257100	-	FTL_1840	-	hypothetical protein
1653	 36.88	+1	1774756..1776165	-	469	89257101	gatB	FTL_1841	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1654	 37.41	+1	1776180..1777625	-	481	89257102	-	FTL_1842	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1655	 31.91	0	1777634..1777915	-	93	89257103	-	FTL_1843	-	Glu-tRNAGln amidotransferase C subunit
1656	 34.97	0	1777998..1778486	-	162	89257104	-	FTL_1844	-	secretion protein
1657	 36.82	+1	1778553..1779068	-	171	89257105	-	FTL_1845	-	RND efflux membrane fusion protein
1658	 29.00	-1	1779193..1779723	-	176	89257106	-	FTL_1846	-	hypothetical protein
1659	 27.78	-1	1779823..1780290	-	155	89257107	-	FTL_1847	-	toxin secretion ABC transporter ATP-binding protein
1660	 28.15	-1	1780211..1780615	-	134	89257108	-	FTL_1848	-	hypothetical protein
1661	 31.26	0	1780702..1781280	-	192	89257109	-	FTL_1849	-	hypothetical protein
1662	 35.49	0	1781314..1782612	-	432	89257110	-	FTL_1850	-	adenylosuccinate lyase
1663	 29.68	0	1782785..1783414	-	209	89257111	isftu2	FTL_1851	-	transposase
1664	 32.83	0	1783795..1784193	+	132	89257112	-	FTL_1852	-	hypothetical protein
1665	 30.40	0	1784436..1785218	+	260	89257113	-	FTL_1853	-	lipoprotein
1666	 33.91	0	1785236..1786096	-	286	89257114	-	FTL_1854	-	hypothetical protein
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.