IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1483	 33.56	0	1587892..1589208	-	438	89256931	-	FTL_1658	-	hypothetical protein
1484	 36.50	+1	1589283..1590860	-	525	89256932	-	FTL_1659	-	peptide chain release factor 3
1485	 32.22	0	1590922..1591551	-	209	89256933	-	FTL_1660	-	thymidylate kinase
1486	 30.76	0	1591564..1592766	-	400	89256934	-	FTL_1661	-	nucleoside permease NUP family protein
1487	 30.33	0	1592785..1593984	-	399	89256935	-	FTL_1662	-	nucleoside permease NUP family protein
1488	 33.06	0	1593974..1594708	-	244	89256936	-	FTL_1663	-	deoxyribose-phosphate aldolase
1489	 36.55	+1	1594698..1595942	-	414	89256937	-	FTL_1664	-	phosphopentomutase
1490	 34.64	0	1595947..1596711	-	254	89256938	-	FTL_1665	-	pantothenate kinase
1491	 35.12	0	1596731..1599424	-	897	89256939	-	FTL_1666	-	DNA polymerase I
1492	 32.51	0	1599520..1600488	-	322	89256940	-	FTL_1667	-	tetraacyldisaccharide 4'-kinase
1493	 34.59	0	1600494..1602323	-	609	89256941	-	FTL_1668	-	Lipid A transport protein, ABC transporter,ATP-binding and membrane protein
1494	 32.50	0	1602428..1603510	+	360	89256942	-	FTL_1669	-	tRNA CCA-pyrophosphorylase
1495	 28.86	-1	1603550..1604041	+	163	89256943	-	FTL_1670	-	disulfide bond formation protein
1496	 33.48	0	1604054..1605427	+	457	89256944	-	FTL_1671	-	RND efflux transporter
1497	 35.77	0	1605427..1608540	+	1037	89256945	-	FTL_1672	-	AcrB/AcrD/AcrF family transporter
1498	 34.50	0	1608672..1609952	+	426	89256946	-	FTL_1673	-	major facilitator transporter
1499	 28.18	-1	1610197..1610778	+	193	89256947	-	FTL_1674	-	hypothetical protein
1500	 27.12	-1	1612224..1613237	-	337	89256948	-	FTL_1678	-	hypothetical protein
1501	 29.97	0	1613466..1613792	-	108	89256949	-	FTL_1679	-	transposase
1502	 29.66	0	1613845..1614498	-	217	89256950	isftu2	FTL_1680	-	transposase
1503	 31.67	0	1614803..1615683	+	293	89256951	isftu1	FTL_1681	-	transposase
1504	 32.14	0	1615735..1615986	+	83	89256952	-	FTL_1682	-	hypothetical protein
1505	 34.77	0	1616054..1617448	+	464	89256953	-	FTL_1683	-	cysteinyl-tRNA synthetase
1506	 33.23	0	1617452..1618396	+	314	89256954	-	FTL_1684	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1507	 31.57	0	1618452..1619639	+	395	89256955	-	FTL_1685	-	major facilitator transporter
1508	 26.22	-1	1619653..1620144	+	163	89256956	-	FTL_1686	-	acetyltransferase
1509	 31.56	0	1620290..1621170	+	293	89256957	isftu1	FTL_1687	-	transposase
1510	 30.99	0	1621483..1622334	-	283	89256958	-	FTL_1689	-	hypothetical protein
1511	 32.26	0	1622338..1623267	-	309	89256959	-	FTL_1690	-	hypothetical protein
1512	 37.97	+1	1623286..1623522	-	78	89256960	-	FTL_1691	-	hypothetical protein
1513	 32.62	0	1623673..1623951	-	92	89256961	-	FTL_1692	-	hypothetical protein
1514	 29.32	0	1624106..1624579	-	157	89256962	-	FTL_1693	-	hypothetical protein
1515	 28.46	-1	1624787..1625977	-	396	89256963	-	FTL_1694	-	hypothetical protein
1516	 29.48	0	1625974..1626777	-	267	89256964	-	FTL_1695	-	hypothetical protein
1517	 32.76	0	1626761..1627108	-	115	89256965	-	FTL_1696	-	hypothetical protein
1518	 29.68	0	1627179..1627643	-	154	89256966	-	FTL_1697	-	metal ion transporter
1519	 31.52	0	1627888..1628217	-	109	89256967	-	FTL_1698	-	hypothetical protein
1520	 31.33	0	1628490..1630085	-	531	89256968	-	FTL_1699	-	hypothetical protein
1521	 35.11	0	1630240..1631706	-	488	89256969	-	FTL_1700	-	Sodium/proline permease
1522	 40.12	+2	1632013..1632999	-	328	89256970	glpX	FTL_1701	-	fructose 1,6-bisphosphatase II
1523	 33.49	0	1633019..1633657	-	212	89256971	-	FTL_1702	-	hypothetical protein
1524	 35.19	0	1633666..1635120	-	484	89256972	-	FTL_1703	-	amino acid transporter
1525	 33.63	0	1635367..1636035	-	222	89256973	-	FTL_1704	-	hypothetical protein
1526	 36.69	+1	1636157..1638658	+	833	89256974	-	FTL_1705	-	cell division protein
1527	 27.51	-1	1638659..1639276	+	205	89256975	-	FTL_1706	-	lipoprotein releasing system, subunit A, outer membrane lipoproteins carrier
1528	 30.39	0	1639670..1639873	-	67	89256976	-	FTL_1707	-	hypothetical protein
1529	 33.81	0	1639985..1641439	+	484	89256977	-	FTL_1708	-	potassium uptake protein
1530	 31.70	0	1641454..1641942	-	162	89256978	-	FTL_1709	-	hypothetical protein
1531	 32.91	0	1642022..1642723	-	233	89256979	-	FTL_1710	-	ProP osmoprotectant transporter, fragment
1532	 34.43	0	1643127..1643675	-	182	89256980	-	FTL_1711	-	HsdR protein, fragment
1533	 33.98	0	1643645..1644412	-	255	89256981	-	FTL_1712	-	HsdR protein, fragment
1534	 31.56	0	1644403..1645283	+	293	89256982	isftu1	FTL_1713	-	transposase
1535	 38.90	+1	1645403..1647037	-	544	89256983	groEL	FTL_1714	-	chaperonin GroEL
1536	 36.46	+1	1647075..1647362	-	95	89256984	groES	FTL_1715	-	co-chaperonin GroES
1537	 28.81	-1	1647620..1648039	+	139	89256985	-	FTL_1716	-	hypothetical protein
1538	 29.43	0	1648650..1649444	+	264	89256986	-	FTL_1717	-	hypothetical protein
1539	 31.56	0	1649495..1650375	-	293	89256987	isftu1	FTL_1718	-	transposase
1540	 30.94	0	1650366..1650866	+	166	89256988	-	FTL_1719	-	hypothetical protein
1541	 31.23	0	1650857..1651711	-	284	89256989	-	FTL_1720	-	modification methylase
1542	 39.23	+1	1651704..1652789	-	361	89256990	prfA	FTL_1721	-	peptide chain release factor 1
1543	 32.69	0	1652790..1654034	-	414	89256991	-	FTL_1722	-	glutamyl-tRNA reductase
1544	 31.14	0	1654214..1654852	+	212	89256992	-	FTL_1723	-	hypothetical protein
1545	 34.87	0	1654855..1656225	+	456	89256993	-	FTL_1724	-	lipoprotein
1546	 34.26	0	1656225..1657406	+	393	89256994	-	FTL_1725	-	eflux protein
1547	 34.50	0	1657496..1659379	+	627	89256995	-	FTL_1726	-	DNA topoisomerase IV subunit B
1548	 32.38	0	1659427..1659951	-	174	89256996	-	FTL_1727	-	N-acetyl-anhydromuranmyl-L-alanine amidase
1549	 28.71	-1	1660025..1660651	+	208	89256997	-	FTL_1728	-	PAP2 family protein
1550	 36.11	+1	1660661..1661128	-	155	89256998	-	FTL_1729	-	dinucleoside polyphosphate hydrolase
1551	 27.88	-1	1661567..1662814	+	415	89256999	-	FTL_1730	-	hypothetical protein
1552	 30.40	0	1662932..1663816	+	294	89257000	-	FTL_1731	-	licB-like transmembrane protein
1553	 32.14	0	1663813..1664397	-	194	89257001	-	FTL_1732	-	acid phosphatase
1554	 34.16	0	1664402..1665247	-	281	89257002	-	FTL_1733	-	oxidoreductase iron/ascorbate family protein
1555	 34.70	0	1665370..1666248	-	292	89257003	-	FTL_1734	-	integrase/recombinase
1556	 33.05	0	1666414..1666761	-	115	89257004	rplS	FTL_1735	-	50S ribosomal protein L19
1557	 35.84	0	1666761..1667519	-	252	89257005	-	FTL_1736	-	tRNA (guanine-N(1)-)-methyltransferase
1558	 31.57	0	1667922..1668431	-	169	89257006	-	FTL_1737	-	16S rRNA processing protein RimM
1559	 38.15	+1	1668474..1668722	-	82	89257007	rpsP	FTL_1738	-	30S ribosomal protein S16
1560	 35.83	0	1669016..1670176	+	386	89257008	-	FTL_1739	-	S-adenosylmethionine synthetase
1561	 33.85	0	1670388..1671554	-	388	89257009	-	FTL_1740	-	fatty acid desaturase
1562	 35.41	0	1671668..1672678	-	336	89257010	-	FTL_1741	-	O-sialoglycoprotein endopeptidase
1563	 28.27	-1	1672678..1672914	-	78	89257011	-	FTL_1742	-	hypothetical protein
1564	 36.62	+1	1673017..1677270	-	1417	89257012	-	FTL_1743	-	DNA-directed RNA polymerase, beta subunit
1565	 35.30	0	1677332..1681408	-	1358	89257013	rpoB	FTL_1744	-	DNA-directed RNA polymerase subunit beta
1566	 38.62	+1	1681562..1681939	-	125	89257014	rplL	FTL_1745	-	50S ribosomal protein L7/L12
1567	 39.11	+1	1682001..1682519	-	172	89257015	rplJ	FTL_1746	-	50S ribosomal protein L10
1568	 37.48	+1	1682689..1683387	-	232	89257016	rplA	FTL_1747	-	50S ribosomal protein L1
1569	 38.16	+1	1683387..1683821	-	144	89257017	rplK	FTL_1748	-	50S ribosomal protein L11
1570	 38.76	+1	1683890..1684423	-	177	89257018	-	FTL_1749	-	transcription antitermination protein nusG
1571	 34.18	0	1684439..1684909	-	156	161353779	secE	FTL_1750	-	preprotein translocase subunit SecE
1572	 41.94	+2	1685101..1686285	-	394	89257020	-	FTL_1751	-	elongation factor Tu
1573	 33.09	0	1686750..1687997	-	415	89257021	-	FTL_1752	-	helicase
1574	 34.34	0	1688164..1688661	-	165	89257022	-	FTL_1753	-	ion channel protein, fragment
1575	 27.73	-1	1688639..1689352	-	237	89257023	-	FTL_1754	-	hypothetical protein
1576	 38.69	+1	1689356..1690120	-	254	89257024	-	FTL_1755	-	glycerol uptake facilitator protein
1577	 33.79	0	1690130..1691662	-	510	89257025	-	FTL_1756	-	anaerobic glycerol-3-phosphate dehydrogenase
1578	 31.56	0	1691978..1692858	+	293	89257026	isftu1	FTL_1757	-	transposase
1579	 31.23	0	1692836..1693120	-	94	89257027	-	FTL_1758	-	hypothetical protein
1580	 32.63	0	1693508..1694788	-	426	89257028	-	FTL_1759	-	hypothetical protein
1581	 33.52	0	1694792..1695319	-	175	89257029	-	FTL_1760	-	hypothetical protein
1582	 33.63	0	1695347..1695682	-	111	89257030	-	FTL_1761	-	hypothetical protein
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.