IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1454	 26.20	-1	1555811..1556455	+	214	89256902	-	FTL_1625	-	NADH dehydrogenase subunit
1455	 28.12	-1	1556471..1556662	-	63	89256903	-	FTL_1626	-	rRNA methylase
1456	 31.56	0	1556653..1557533	+	293	89256904	isftu1	FTL_1627	-	transposase
1457	 35.43	0	1557758..1558471	+	237	89256905	-	FTL_1628	-	hypothetical protein
1458	 33.68	0	1558425..1560131	+	568	89256906	-	FTL_1629	-	hypothetical protein
1459	 31.56	0	1560132..1561012	-	293	89256907	isftu1	FTL_1630	-	transposase
1460	 29.28	0	1561074..1562108	-	344	89256908	-	FTL_1631	-	hypothetical protein
1461	 31.33	0	1562127..1562375	-	82	89256909	-	FTL_1632	-	hypothetical protein
1462	 30.58	0	1562442..1563167	-	241	89256910	-	FTL_1633	-	hypothetical protein
1463	 30.51	0	1563348..1564340	-	330	89256911	-	FTL_1634	-	LysR family transcriptional regulator
1464	 35.08	0	1564878..1566992	+	704	89256912	-	FTL_1635	-	chitinase, fragment
1465	 33.85	0	1566967..1567161	+	64	89256913	-	FTL_1636	-	hypothetical protein
1466	 35.36	0	1568349..1569383	-	344	89256914	-	FTL_1637	-	lipoprotein
1467	 32.61	0	1569510..1570205	+	231	89256915	-	FTL_1638	-	3-demethylubiquinone-9 3-methyltransferase
1468	 25.13	-2	1570208..1570951	+	247	89256916	-	FTL_1639	-	hypothetical protein
1469	 33.60	0	1571317..1572819	+	500	89256917	-	FTL_1640	-	amino acid transporter protein, fragment
1470	 25.89	-1	1572832..1573113	+	93	89256918	-	FTL_1641	-	hypothetical protein
1471	 25.83	-1	1573127..1573366	-	79	89256919	-	FTL_1642	-	hypothetical protein
1472	 31.56	0	1573357..1574237	+	293	89256920	isftu1	FTL_1643	-	transposase
1473	 37.71	+1	1574234..1575742	-	502	89256921	-	FTL_1644	-	glycerol kinase
1474	 32.84	0	1575811..1577022	-	403	89256922	-	FTL_1645	-	major facilitator transporter
1475	 33.99	0	1577182..1577793	-	203	89256923	-	FTL_1646	-	hypothetical protein
1476	 30.84	0	1577927..1579129	+	400	89256924	-	FTL_1647	-	major facilitator transporter
1477	 36.07	+1	1579298..1580101	-	267	89256925	-	FTL_1648	-	oligopeptide transporter, subunit D, ABC transporter, ATP-binding protein
1478	 33.95	0	1581927..1582250	-	107	89256926	-	FTL_1653	-	peptide transport system substrate-binding protein
1479	 34.44	0	1582344..1583603	-	419	89256927	-	FTL_1654	-	hypothetical protein
1480	 29.65	0	1583637..1584260	-	207	89256928	isftu2	FTL_1655	-	transposase
1481	 33.47	0	1584551..1586773	-	740	89256929	-	FTL_1656	-	DNA helicase II
1482	 34.74	0	1586864..1587859	-	331	89256930	-	FTL_1657	-	signal recognition particle receptor FtsY
1483	 33.56	0	1587892..1589208	-	438	89256931	-	FTL_1658	-	hypothetical protein
1484	 36.50	+1	1589283..1590860	-	525	89256932	-	FTL_1659	-	peptide chain release factor 3
1485	 32.22	0	1590922..1591551	-	209	89256933	-	FTL_1660	-	thymidylate kinase
1486	 30.76	0	1591564..1592766	-	400	89256934	-	FTL_1661	-	nucleoside permease NUP family protein
1487	 30.33	0	1592785..1593984	-	399	89256935	-	FTL_1662	-	nucleoside permease NUP family protein
1488	 33.06	0	1593974..1594708	-	244	89256936	-	FTL_1663	-	deoxyribose-phosphate aldolase
1489	 36.55	+1	1594698..1595942	-	414	89256937	-	FTL_1664	-	phosphopentomutase
1490	 34.64	0	1595947..1596711	-	254	89256938	-	FTL_1665	-	pantothenate kinase
1491	 35.12	0	1596731..1599424	-	897	89256939	-	FTL_1666	-	DNA polymerase I
1492	 32.51	0	1599520..1600488	-	322	89256940	-	FTL_1667	-	tetraacyldisaccharide 4'-kinase
1493	 34.59	0	1600494..1602323	-	609	89256941	-	FTL_1668	-	Lipid A transport protein, ABC transporter,ATP-binding and membrane protein
1494	 32.50	0	1602428..1603510	+	360	89256942	-	FTL_1669	-	tRNA CCA-pyrophosphorylase
1495	 28.86	-1	1603550..1604041	+	163	89256943	-	FTL_1670	-	disulfide bond formation protein
1496	 33.48	0	1604054..1605427	+	457	89256944	-	FTL_1671	-	RND efflux transporter
1497	 35.77	0	1605427..1608540	+	1037	89256945	-	FTL_1672	-	AcrB/AcrD/AcrF family transporter
1498	 34.50	0	1608672..1609952	+	426	89256946	-	FTL_1673	-	major facilitator transporter
1499	 28.18	-1	1610197..1610778	+	193	89256947	-	FTL_1674	-	hypothetical protein
1500	 27.12	-1	1612224..1613237	-	337	89256948	-	FTL_1678	-	hypothetical protein
1501	 29.97	0	1613466..1613792	-	108	89256949	-	FTL_1679	-	transposase
1502	 29.66	0	1613845..1614498	-	217	89256950	isftu2	FTL_1680	-	transposase
1503	 31.67	0	1614803..1615683	+	293	89256951	isftu1	FTL_1681	-	transposase
1504	 32.14	0	1615735..1615986	+	83	89256952	-	FTL_1682	-	hypothetical protein
1505	 34.77	0	1616054..1617448	+	464	89256953	-	FTL_1683	-	cysteinyl-tRNA synthetase
1506	 33.23	0	1617452..1618396	+	314	89256954	-	FTL_1684	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1507	 31.57	0	1618452..1619639	+	395	89256955	-	FTL_1685	-	major facilitator transporter
1508	 26.22	-1	1619653..1620144	+	163	89256956	-	FTL_1686	-	acetyltransferase
1509	 31.56	0	1620290..1621170	+	293	89256957	isftu1	FTL_1687	-	transposase
1510	 30.99	0	1621483..1622334	-	283	89256958	-	FTL_1689	-	hypothetical protein
1511	 32.26	0	1622338..1623267	-	309	89256959	-	FTL_1690	-	hypothetical protein
1512	 37.97	+1	1623286..1623522	-	78	89256960	-	FTL_1691	-	hypothetical protein
1513	 32.62	0	1623673..1623951	-	92	89256961	-	FTL_1692	-	hypothetical protein
1514	 29.32	0	1624106..1624579	-	157	89256962	-	FTL_1693	-	hypothetical protein
1515	 28.46	-1	1624787..1625977	-	396	89256963	-	FTL_1694	-	hypothetical protein
1516	 29.48	0	1625974..1626777	-	267	89256964	-	FTL_1695	-	hypothetical protein
1517	 32.76	0	1626761..1627108	-	115	89256965	-	FTL_1696	-	hypothetical protein
1518	 29.68	0	1627179..1627643	-	154	89256966	-	FTL_1697	-	metal ion transporter
1519	 31.52	0	1627888..1628217	-	109	89256967	-	FTL_1698	-	hypothetical protein
1520	 31.33	0	1628490..1630085	-	531	89256968	-	FTL_1699	-	hypothetical protein
1521	 35.11	0	1630240..1631706	-	488	89256969	-	FTL_1700	-	Sodium/proline permease
1522	 40.12	+2	1632013..1632999	-	328	89256970	glpX	FTL_1701	-	fructose 1,6-bisphosphatase II
1523	 33.49	0	1633019..1633657	-	212	89256971	-	FTL_1702	-	hypothetical protein
1524	 35.19	0	1633666..1635120	-	484	89256972	-	FTL_1703	-	amino acid transporter
1525	 33.63	0	1635367..1636035	-	222	89256973	-	FTL_1704	-	hypothetical protein
1526	 36.69	+1	1636157..1638658	+	833	89256974	-	FTL_1705	-	cell division protein
1527	 27.51	-1	1638659..1639276	+	205	89256975	-	FTL_1706	-	lipoprotein releasing system, subunit A, outer membrane lipoproteins carrier
1528	 30.39	0	1639670..1639873	-	67	89256976	-	FTL_1707	-	hypothetical protein
1529	 33.81	0	1639985..1641439	+	484	89256977	-	FTL_1708	-	potassium uptake protein
1530	 31.70	0	1641454..1641942	-	162	89256978	-	FTL_1709	-	hypothetical protein
1531	 32.91	0	1642022..1642723	-	233	89256979	-	FTL_1710	-	ProP osmoprotectant transporter, fragment
1532	 34.43	0	1643127..1643675	-	182	89256980	-	FTL_1711	-	HsdR protein, fragment
1533	 33.98	0	1643645..1644412	-	255	89256981	-	FTL_1712	-	HsdR protein, fragment
1534	 31.56	0	1644403..1645283	+	293	89256982	isftu1	FTL_1713	-	transposase
1535	 38.90	+1	1645403..1647037	-	544	89256983	groEL	FTL_1714	-	chaperonin GroEL
1536	 36.46	+1	1647075..1647362	-	95	89256984	groES	FTL_1715	-	co-chaperonin GroES
1537	 28.81	-1	1647620..1648039	+	139	89256985	-	FTL_1716	-	hypothetical protein
1538	 29.43	0	1648650..1649444	+	264	89256986	-	FTL_1717	-	hypothetical protein
1539	 31.56	0	1649495..1650375	-	293	89256987	isftu1	FTL_1718	-	transposase
1540	 30.94	0	1650366..1650866	+	166	89256988	-	FTL_1719	-	hypothetical protein
1541	 31.23	0	1650857..1651711	-	284	89256989	-	FTL_1720	-	modification methylase
1542	 39.23	+1	1651704..1652789	-	361	89256990	prfA	FTL_1721	-	peptide chain release factor 1
1543	 32.69	0	1652790..1654034	-	414	89256991	-	FTL_1722	-	glutamyl-tRNA reductase
1544	 31.14	0	1654214..1654852	+	212	89256992	-	FTL_1723	-	hypothetical protein
1545	 34.87	0	1654855..1656225	+	456	89256993	-	FTL_1724	-	lipoprotein
1546	 34.26	0	1656225..1657406	+	393	89256994	-	FTL_1725	-	eflux protein
1547	 34.50	0	1657496..1659379	+	627	89256995	-	FTL_1726	-	DNA topoisomerase IV subunit B
1548	 32.38	0	1659427..1659951	-	174	89256996	-	FTL_1727	-	N-acetyl-anhydromuranmyl-L-alanine amidase
1549	 28.71	-1	1660025..1660651	+	208	89256997	-	FTL_1728	-	PAP2 family protein
1550	 36.11	+1	1660661..1661128	-	155	89256998	-	FTL_1729	-	dinucleoside polyphosphate hydrolase
1551	 27.88	-1	1661567..1662814	+	415	89256999	-	FTL_1730	-	hypothetical protein
1552	 30.40	0	1662932..1663816	+	294	89257000	-	FTL_1731	-	licB-like transmembrane protein
1553	 32.14	0	1663813..1664397	-	194	89257001	-	FTL_1732	-	acid phosphatase
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.