IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1377	 33.33	0	1469967..1470884	-	305	89256825	-	FTL_1541	-	S-adenosyl-methyltransferase
1378	 33.05	0	1470890..1472989	-	699	89256826	-	FTL_1542	-	hypothetical protein
1379	 29.45	0	1473082..1473906	+	274	89256827	-	FTL_1543	-	formamidopyrimidine-DNA glycosylase
1380	 31.56	0	1473977..1474857	+	293	89256828	isftu1	FTL_1544	-	transposase
1381	 32.41	0	1474865..1475404	-	179	89256829	-	FTL_1545	-	glutamine amidotransferase subunit PdxT
1382	 39.12	+1	1475407..1476270	-	287	89256830	-	FTL_1546	-	pyridoxine biosynthesis protein
1383	 34.66	0	1476400..1478811	-	803	89256831	-	FTL_1547	-	DNA gyrase subunit B
1384	 33.96	0	1478993..1479793	+	266	89256832	-	FTL_1548	-	hypothetical protein
1385	 32.22	0	1479827..1480810	+	327	89256833	-	FTL_1549	-	tRNA-dihydrouridine synthase A
1386	 32.55	0	1480817..1481584	-	255	89256834	-	FTL_1550	-	lipoprotein
1387	 32.06	0	1482252..1482566	+	104	89256835	-	FTL_1551	-	hypothetical protein
1388	 31.50	0	1482574..1484487	-	637	89256836	-	FTL_1552	-	hypothetical protein
1389	 37.80	+1	1484657..1485820	+	387	89256837	sucC	FTL_1553	-	succinyl-CoA synthetase subunit beta
1390	 40.09	+2	1485852..1486724	+	290	89256838	-	FTL_1554	-	succinyl-CoA synthetase, alpha subunit
1391	 37.32	+1	1486834..1487259	+	141	89256839	-	FTL_1555	-	hypothetical protein
1392	 29.53	0	1487658..1488683	+	341	89256840	-	FTL_1556	-	hypothetical protein
1393	 30.98	0	1488815..1489495	-	226	89256841	-	FTL_1557	-	hypothetical protein
1394	 28.76	-1	1489504..1490028	-	174	89256842	-	FTL_1558	-	hypothetical protein
1395	 33.06	0	1494231..1494953	+	240	89256843	-	FTL_1566	-	CutC family protein
1396	 34.70	0	1494968..1496134	-	388	89256844	-	FTL_1567	-	major facilitator transporter
1397	 28.99	-1	1496245..1497165	+	306	89256845	-	FTL_1568	-	LysR family transcriptional regulator
1398	 31.36	0	1497208..1497867	+	219	89256846	-	FTL_1569	-	phosphoglycolate phosphatase
1399	 29.31	0	1497910..1499127	+	405	89256847	-	FTL_1570	-	phospholipase D family protein
1400	 36.80	+1	1499219..1500169	+	316	89256848	-	FTL_1571	-	thioredoxin reductase
1401	 28.64	-1	1500465..1501124	+	219	89256849	isftu2	FTL_1572	-	transposase
1402	 25.80	-1	1501135..1501824	+	229	89256850	-	FTL_1573	-	major facilitator transporter
1403	 26.08	-1	1501930..1502301	+	123	89256851	-	FTL_1574	-	hypothetical protein
1404	 29.87	0	1502373..1503209	-	278	89256852	-	FTL_1575	-	hypothetical protein
1405	 34.39	0	1503393..1505195	-	600	89256853	-	FTL_1576	-	DNA mismatch repair protein
1406	 34.52	0	1505203..1505538	-	111	89256854	-	FTL_1577	-	hypothetical protein
1407	 31.59	0	1505522..1505866	-	114	89256855	-	FTL_1578	-	hypothetical protein
1408	 37.92	+1	1505934..1506653	-	239	89256856	-	FTL_1579	-	hypothetical protein
1409	 32.43	0	1506807..1507694	+	295	89256857	-	FTL_1580	-	hypothetical protein
1410	 40.32	+2	1507913..1508728	+	271	89256858	-	FTL_1581	-	lipoprotein
1411	 30.03	0	1508981..1510162	-	393	89256859	-	FTL_1582	-	putrescine-binding periplasmic protein
1412	 33.40	0	1510246..1511655	+	469	89256860	-	FTL_1583	-	glutamate:gamma-aminobutyric acid antiporter family protein
1413	 30.17	0	1511757..1512863	+	368	89256861	-	FTL_1584	-	PerM family protein
1414	 32.99	0	1512857..1514599	+	580	89256862	-	FTL_1585	-	single-stranded-DNA-specific exonuclease
1415	 27.84	-1	1514596..1515378	+	260	89256863	-	FTL_1586	-	biotin--acetyl-CoA-carboxylase ligase
1416	 30.74	0	1515375..1516298	+	307	89256864	-	FTL_1587	-	lysyl-tRNA synthetase
1417	 30.61	0	1516303..1517148	-	281	89256865	-	FTL_1588	-	mechanosensitive ion channel protein
1418	 28.69	-1	1516986..1517717	-	243	89256866	isftu2	FTL_1589	-	transposase
1419	 29.81	0	1518304..1518984	-	226	89256867	-	FTL_1590	-	hypothetical protein
1420	 36.65	+1	1519078..1520433	-	451	89256868	-	FTL_1591	-	Acetyl-CoA carboxylase, biotin carboxylase subunit
1421	 37.34	+1	1520498..1520971	-	157	89256869	-	FTL_1592	-	Acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit
1422	 30.59	0	1520976..1521413	-	145	89256870	-	FTL_1593	-	3-dehydroquinate dehydratase
1423	 31.04	0	1521417..1522244	-	275	89256871	apaH	FTL_1594	-	diadenosine tetraphosphatase
1424	 31.18	0	1522256..1523044	-	262	89256872	ksgA	FTL_1595	-	dimethyladenosine transferase
1425	 32.41	0	1523046..1524455	-	469	89256873	-	FTL_1596	-	peptidyl-prolyl cis-trans isomerase (PPIase)
1426	 32.80	0	1524455..1527061	-	868	89256874	-	FTL_1597	-	organic solvent tolerance protein
1427	 34.88	0	1527187..1528932	+	581	89256875	argS	FTL_1598	-	arginyl-tRNA synthetase
1428	 37.47	+1	1528984..1529370	-	128	89256876	-	FTL_1599	-	hypothetical protein
1429	 30.73	0	1529789..1530709	-	306	89256877	-	FTL_1600	-	periplasmic L-asparaginase II precursor
1430	 31.84	0	1530970..1531437	-	155	89256878	-	FTL_1601	-	tRNA/rRNA methyltransferase
1431	 37.13	+1	1531440..1532414	-	324	89256879	-	FTL_1602	-	delta-aminolevulinic acid dehydratase
1432	 33.69	0	1532422..1532700	-	92	89256880	-	FTL_1603	-	RNA-binding protein
1433	 29.28	0	1532711..1533622	-	303	89256881	-	FTL_1604	-	DNA polymerase III, delta prime subunit
1434	 33.53	0	1533630..1534646	-	338	89256882	-	FTL_1605	-	putative periplasmic protease
1435	 33.33	0	1534658..1535287	-	209	89256883	-	FTL_1606	-	stringent starvation protein A, regulator of transcription
1436	 34.60	0	1535376..1535690	+	104	89256884	-	FTL_1607	-	anaerobic sulfite reductase subunit
1437	 31.44	0	1535711..1535974	+	87	89256885	-	FTL_1608	-	hypothetical protein
1438	 30.83	0	1536066..1537826	+	586	89256886	-	FTL_1609	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
1439	 31.56	0	1538111..1538991	-	293	89256887	isftu1	FTL_1610	-	transposase
1440	 33.75	0	1539150..1540103	-	317	89256888	-	FTL_1611	-	glycosyl transferase, group 2 family protein
1441	 29.62	0	1540205..1541011	+	268	89256889	-	FTL_1612	-	hypothetical protein
1442	 33.91	0	1541019..1542224	-	401	89256890	-	FTL_1613	-	cell division protein FtsW
1443	 29.58	0	1542234..1543484	-	416	89256891	-	FTL_1614	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1444	 33.70	0	1543484..1544581	-	365	89256892	-	FTL_1615	-	phospho-N-acetylmuramoyl-pentapeptide transferase
1445	 32.51	0	1544656..1546242	-	528	89256893	-	FTL_1616	-	phosphoenolpyruvate carboxykinase
1446	 33.94	0	1546393..1548039	+	548	89256894	-	FTL_1617	-	glutaminyl-tRNA synthetase
1447	 27.49	-1	1548060..1548641	+	193	89256895	-	FTL_1618	-	hypothetical protein
1448	 26.32	-1	1548593..1549348	+	251	89256896	-	FTL_1619	-	hypothetical protein
1449	 29.32	0	1549544..1550017	-	157	89256897	-	FTL_1620	-	proton-dependent oligopeptide transport (POT) family protein
1450	 31.98	0	1550089..1551930	-	613	89256898	-	FTL_1621	-	ABC transporter, ATP-binding
1451	 34.15	0	1551964..1553190	-	408	89256899	-	FTL_1622	-	multidrug transporter (tetracycline resistance protein)
1452	 29.02	-1	1553273..1554316	-	347	89256900	-	FTL_1623	-	hypothetical protein
1453	 31.57	0	1554588..1555781	+	397	89256901	-	FTL_1624	-	major facilitator transporter
1454	 26.20	-1	1555811..1556455	+	214	89256902	-	FTL_1625	-	NADH dehydrogenase subunit
1455	 28.12	-1	1556471..1556662	-	63	89256903	-	FTL_1626	-	rRNA methylase
1456	 31.56	0	1556653..1557533	+	293	89256904	isftu1	FTL_1627	-	transposase
1457	 35.43	0	1557758..1558471	+	237	89256905	-	FTL_1628	-	hypothetical protein
1458	 33.68	0	1558425..1560131	+	568	89256906	-	FTL_1629	-	hypothetical protein
1459	 31.56	0	1560132..1561012	-	293	89256907	isftu1	FTL_1630	-	transposase
1460	 29.28	0	1561074..1562108	-	344	89256908	-	FTL_1631	-	hypothetical protein
1461	 31.33	0	1562127..1562375	-	82	89256909	-	FTL_1632	-	hypothetical protein
1462	 30.58	0	1562442..1563167	-	241	89256910	-	FTL_1633	-	hypothetical protein
1463	 30.51	0	1563348..1564340	-	330	89256911	-	FTL_1634	-	LysR family transcriptional regulator
1464	 35.08	0	1564878..1566992	+	704	89256912	-	FTL_1635	-	chitinase, fragment
1465	 33.85	0	1566967..1567161	+	64	89256913	-	FTL_1636	-	hypothetical protein
1466	 35.36	0	1568349..1569383	-	344	89256914	-	FTL_1637	-	lipoprotein
1467	 32.61	0	1569510..1570205	+	231	89256915	-	FTL_1638	-	3-demethylubiquinone-9 3-methyltransferase
1468	 25.13	-2	1570208..1570951	+	247	89256916	-	FTL_1639	-	hypothetical protein
1469	 33.60	0	1571317..1572819	+	500	89256917	-	FTL_1640	-	amino acid transporter protein, fragment
1470	 25.89	-1	1572832..1573113	+	93	89256918	-	FTL_1641	-	hypothetical protein
1471	 25.83	-1	1573127..1573366	-	79	89256919	-	FTL_1642	-	hypothetical protein
1472	 31.56	0	1573357..1574237	+	293	89256920	isftu1	FTL_1643	-	transposase
1473	 37.71	+1	1574234..1575742	-	502	89256921	-	FTL_1644	-	glycerol kinase
1474	 32.84	0	1575811..1577022	-	403	89256922	-	FTL_1645	-	major facilitator transporter
1475	 33.99	0	1577182..1577793	-	203	89256923	-	FTL_1646	-	hypothetical protein
1476	 30.84	0	1577927..1579129	+	400	89256924	-	FTL_1647	-	major facilitator transporter
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.