IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
94	 31.55	0	99118..99510	-	130	89255543	-	FTL_0105	-	hypothetical protein
95	 31.44	0	100311..101191	+	293	89255544	isftu1	FTL_0107	-	transposase
96	 29.67	0	101192..102064	-	290	89255545	-	FTL_0108	-	hypothetical protein
97	 30.10	0	102157..102558	+	133	89255546	-	FTL_0109	-	hypothetical protein
98	 29.90	0	102568..102771	+	67	89255547	-	FTL_0110	-	hypothetical protein
99	 32.25	0	102852..103406	+	184	89255548	-	FTL_0111	-	intracellular growth locus, subunit A
100	 31.03	0	103420..104940	+	506	89255549	-	FTL_0112	-	intracellular growth locus, subunit B
101	 34.60	0	104957..105586	+	209	89255550	-	FTL_0113	-	intracellular growth locus, subunit C
102	 29.24	0	105607..106803	+	398	89255551	-	FTL_0114	-	intracellular growth locus, subunit D
103	 24.48	-2	106810..107385	-	191	89255552	-	FTL_0115	-	hypothetical protein
104	 26.39	-1	107403..111389	-	1328	89255553	-	FTL_0116	-	hypothetical protein
105	 23.51	-2	111429..112202	-	257	89255554	-	FTL_0117	-	hypothetical protein
106	 26.13	-1	112168..113319	-	383	89255555	-	FTL_0118	-	hypothetical protein
107	 27.88	-1	113341..113964	-	207	89255556	-	FTL_0119	-	hypothetical protein
108	 26.14	-1	113977..115407	-	476	89255557	-	FTL_0120	-	hypothetical protein
109	 33.14	0	115420..115941	-	173	89255558	-	FTL_0121	-	hypothetical protein
110	 23.84	-2	116009..117673	-	554	89255559	-	FTL_0122	-	hypothetical protein
111	 30.10	0	117678..118172	-	164	89255560	-	FTL_0123	-	hypothetical protein
112	 23.81	-2	118185..118562	-	125	89255561	-	FTL_0124	-	hypothetical protein
113	 25.99	-1	118552..121833	-	1093	89255562	-	FTL_0125	-	hypothetical protein
114	 27.00	-1	121838..124300	-	820	89255563	-	FTL_0126	-	hypothetical protein
115	 33.33	0	129871..130587	+	238	89255564	-	FTL_0127	-	formate dehydrogenase
116	 31.44	0	130645..131525	+	293	89255565	isftu1	FTL_0128	-	transposase
117	 35.78	0	131814..132632	-	272	89255566	-	FTL_0129	-	2-isopropylmalate synthase
118	 34.12	0	132640..132894	-	84	89255567	-	FTL_0130	-	isopropylmalate/homocitrate/citramalate synthase family protein
119	 33.56	0	132905..133792	-	295	89255568	-	FTL_0131	-	branched-chain amino acid aminotransferase protein (class IV)
120	 37.17	+1	134193..136826	-	877	89255569	-	FTL_0132	-	pyruvate phosphate dikinase
121	 33.47	0	137653..139896	-	747	89255570	-	FTL_0133	-	ferrous iron transport protein
122	 28.90	-1	139997..140470	-	157	89255571	-	FTL_0134	-	hypothetical protein
123	 31.56	0	140442..141322	-	293	89255572	isftu1	FTL_0135	-	transposase
124	 27.01	-1	141811..142443	-	210	89255573	-	FTL_0136	-	hypothetical protein
125	 27.97	-1	143094..144062	-	322	89255574	-	FTL_0137	-	lipopolysaccharide protein
126	 32.96	0	144251..146101	+	616	89255575	-	FTL_0138	-	ribonuclease II family protein
127	 33.18	0	146438..147106	+	222	89255576	-	FTL_0139	-	carboxylesterase/phospholipase family protein
128	 34.66	0	147103..148005	+	300	89255577	-	FTL_0140	-	hydroxymethylbilane synthase (porphobilinogen deaminase)
129	 32.44	0	148006..148341	+	111	89255578	-	FTL_0141	-	CrcB family protein
130	 32.11	0	148394..148801	+	135	89255579	-	FTL_0142	-	hypothetical protein
131	 35.98	+1	149154..149531	+	125	89255580	-	FTL_0143	-	hypothetical protein
132	 32.18	0	149528..149701	-	57	89255581	-	FTL_0144	-	hypothetical protein
133	 33.94	0	149830..151629	+	599	89255582	-	FTL_0145	-	ABC transporter, membrane protein
134	 36.90	+1	151648..152964	+	438	89255583	-	FTL_0146	-	ABC transporter, ATP-binding protein
135	 32.62	0	153051..154589	+	512	89255584	-	FTL_0147	-	hypothetical protein
136	 32.59	0	154695..156569	+	624	89255585	-	FTL_0148	-	Sodium/hydrogen exchanger (antiporter) family protein
137	 37.04	+1	156554..157093	+	179	89255586	-	FTL_0149	-	carbonic anhydrase
138	 30.64	0	157020..157688	+	222	89255587	-	FTL_0150	-	lipoprotein releasing system, subunit B, outer membrane lipoprotein
139	 31.04	0	157676..158503	+	275	89255588	-	FTL_0151	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
140	 32.09	0	158692..159012	+	106	89255589	-	FTL_0152	-	hypothetical protein
141	 31.56	0	159036..159916	+	293	89255590	isftu1	FTL_0153	-	transposase
142	 35.84	0	160758..161753	-	331	89255591	-	FTL_0156	-	phosphate transport protein
143	 29.98	0	161771..162427	-	218	89255592	-	FTL_0157	-	hypothetical protein
144	 33.74	0	162734..164209	+	491	89255593	-	FTL_0158	-	acid phosphatase (precursor)
145	 36.04	+1	164216..165028	-	270	89255594	-	FTL_0159	-	hydrolase subunit
146	 34.79	0	165112..165729	-	205	89255595	-	FTL_0160	-	hypothetical protein
147	 30.47	0	166392..167090	-	232	89255596	-	FTL_0162	-	hypothetical protein
148	 37.59	+1	167216..167356	-	46	89255597	-	FTL_0163	-	MFS transporter
149	 31.56	0	167422..168302	-	293	89255598	isftu1	FTL_0164	-	transposase
150	 38.27	+1	168385..168546	-	53	89255599	-	FTL_0165	-	dicarboxylate MFS transporter
151	 34.53	0	168662..169498	-	278	89255600	-	FTL_0166	-	universal stress protein
152	 31.29	0	169574..172315	-	913	89255601	-	FTL_0167	-	DNA/RNA helicase
153	 34.13	0	172299..173051	-	250	89255602	-	FTL_0168	-	hypothetical protein
154	 34.57	0	173151..173714	-	187	89255603	-	FTL_0169	-	hypothetical protein
155	 30.19	0	174113..174526	+	137	89255604	-	FTL_0170	-	hypothetical protein
156	 33.79	0	174537..175409	-	290	89255605	-	FTL_0171	-	tetrapyrrole methyltransferase family protein
157	 33.85	0	175402..176757	-	451	89255606	-	FTL_0172	-	UDP-N-acetylmuramate--alanine ligase
158	 34.63	0	176824..177597	-	257	89255607	-	FTL_0173	-	shikimate 5-dehydrogenase
159	 39.00	+1	177724..178182	+	152	89255608	-	FTL_0174	-	hypothetical protein
160	 36.30	+1	178274..178408	+	44	89255609	rpmH	FTL_0175	-	50S ribosomal protein L34
161	 31.92	0	178398..178751	+	117	89255610	-	FTL_0176	-	ribonuclease P protein component
162	 33.33	0	178727..178975	+	82	89255611	-	FTL_0177	-	hypothetical protein
163	 33.51	0	178984..180639	+	551	89255612	-	FTL_0178	-	inner-membrane protein
164	 32.67	0	180646..181545	+	299	89255613	-	FTL_0179	-	acyltransferase
165	 33.01	0	181606..182529	+	307	89255614	-	FTL_0180	-	acyltransferase
166	 36.27	+1	182542..182949	+	135	89255615	-	FTL_0181	-	Type IV pili fiber building block protein
167	 34.56	0	182989..183558	+	189	89255616	-	FTL_0182	-	elongation factor P
168	 34.08	0	183561..184097	+	178	89255617	-	FTL_0183	-	oligoribonuclease
169	 35.90	+1	184132..184326	+	64	89255618	-	FTL_0184	-	hypothetical protein
170	 31.44	0	184350..185230	+	293	89255619	isftu1	FTL_0185	-	transposase
171	 30.03	0	185208..186326	-	372	89255620	-	FTL_0186	-	hypothetical protein
172	 28.48	-1	186394..187134	-	246	89255621	-	FTL_0187	-	cyclohexadienyl dehydratase precursor,psueodogene
173	 35.68	0	187327..188520	-	397	89255622	-	FTL_0188	-	cytochrome d terminal oxidase, polypeptide subunit II
174	 36.92	+1	188531..190285	-	584	89255623	-	FTL_0189	-	cytochrome d terminal oxidase, polypeptide subunit I
175	 32.97	0	190738..192105	-	455	89255624	-	FTL_0190	-	major facilitator transporter
176	 35.66	0	192465..193367	+	300	89255625	-	FTL_0191	-	cytochrome O ubiquinol oxidase subunit II
177	 37.52	+1	193406..195436	+	676	89255626	-	FTL_0192	-	cytochrome O ubiquinol oxidase subunit I
178	 33.83	0	195433..196035	+	200	89255627	-	FTL_0193	-	cytochrome O ubiquinol oxidase, subunit III
179	 35.44	0	196037..196369	+	110	89255628	-	FTL_0194	-	cytochrome O ubiquinol oxidase subunit IV
180	 30.74	0	196400..197248	+	282	89255629	-	FTL_0195	-	Protoheme IX farnesyltransferase
181	 35.63	0	197393..198436	-	347	89255630	-	FTL_0196	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
182	 31.03	0	198511..199206	-	231	89255631	-	FTL_0197	-	hypothetical protein
183	 34.51	0	199206..200057	-	283	89255632	-	FTL_0198	-	pyridoxal kinase
184	 31.03	0	200064..200498	-	144	89255633	-	FTL_0199	-	hypothetical protein
185	 37.30	+1	200644..201600	+	318	89255634	-	FTL_0200	-	methanol dehydrogenase regulatory protein
186	 32.57	0	201613..202524	+	303	89255635	-	FTL_0201	-	hypothetical protein
187	 32.49	0	202514..202990	+	158	89255636	-	FTL_0202	-	hypothetical protein
188	 34.43	0	202987..203988	+	333	89255637	-	FTL_0203	-	hypothetical protein
189	 36.34	+1	203990..204988	+	332	89255638	-	FTL_0204	-	TPR repeat-containing protein
190	 30.75	0	204979..205713	+	244	89255639	-	FTL_0205	-	TPR repeat-containing protein
191	 32.47	0	205703..207328	+	541	89255640	-	FTL_0206	-	hypothetical protein
192	 35.58	0	207335..208003	+	222	89255641	-	FTL_0207	-	pyrrolidone-carboxylate peptidase
193	 28.36	-1	208011..208493	+	160	89255642	-	FTL_0208	-	putative cytochrome c-type biogenesis protein
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.