IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1339	 34.65	0	1428815..1429195	-	126	89256787	-	FTL_1498	-	translation initiation inhibitor
1340	 34.56	0	1429195..1430739	-	514	89256788	-	FTL_1499	-	sulfate permease family protein
1341	 30.19	0	1430858..1431334	-	158	89256789	-	FTL_1500	-	transposase
1342	 30.96	0	1431708..1432928	+	406	89256790	-	FTL_1502	-	major facilitator transporter
1343	 32.13	0	1432912..1434237	-	441	89256791	-	FTL_1503	-	deoxyguanosinetriphosphate triphosphohydrolase
1344	 38.13	+1	1434341..1436527	-	728	89256792	-	FTL_1504	-	peroxidase/catalase
1345	 31.56	0	1437326..1438206	-	293	89256793	isftu1	FTL_1505	-	transposase
1346	 34.67	0	1438513..1438962	-	149	89256794	-	FTL_1506	-	Short-chain dehydrogenase/reductase family protein
1347	 28.13	-1	1438968..1439294	-	108	89256795	-	FTL_1507	-	3-oxoacyl-[acyl-carrier protein] reductase
1348	 29.38	0	1440148..1440678	-	176	89256796	-	FTL_1509	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
1349	 36.37	+1	1440694..1442010	-	438	89256797	-	FTL_1510	-	glycerol-3-phosphate transporter
1350	 33.62	0	1442117..1443151	-	344	89256798	-	FTL_1511	-	glycerophosphoryl diester phosphodiesterase family protein
1351	 30.97	0	1443453..1444256	+	267	89256799	-	FTL_1512	-	hypothetical protein
1352	 33.01	0	1444253..1445185	+	310	89256800	-	FTL_1513	-	ABC transporter, ATP-binding protein
1353	 29.79	0	1445182..1445604	+	140	89256801	-	FTL_1514	-	ABC-2 type transport system permease protein
1354	 30.27	0	1445743..1446297	+	184	89256802	-	FTL_1515	-	ABC transporter, membrane protein
1355	 29.29	0	1446542..1447135	+	197	89256803	isftu2	FTL_1516	-	transposase
1356	 33.62	0	1447184..1447528	-	114	89256804	-	FTL_1517	-	hypothetical protein
1357	 36.83	+1	1448536..1449165	-	209	89256805	-	FTL_1520	-	uracil phosphoribosyltransferase
1358	 36.38	+1	1449357..1451651	-	764	89256806	-	FTL_1521	-	chitinase family 18 protein
1359	 34.34	0	1452185..1453381	+	398	89256807	-	FTL_1522	-	2-amino-3-ketobutyrate coenzyme A ligase
1360	 37.88	+1	1453404..1454459	+	351	89256808	tdh	FTL_1523	-	L-threonine 3-dehydrogenase
1361	 27.47	-1	1454461..1455723	+	420	89256809	-	FTL_1524	-	serine transporter
1362	 31.59	0	1455728..1456417	-	229	89256810	-	FTL_1525	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1363	 30.24	0	1456407..1456697	-	96	89256811	-	FTL_1526	-	cell division protein
1364	 35.96	+1	1456705..1458075	-	456	89256812	-	FTL_1527	-	enolase (2-phosphoglycerate dehydratase)
1365	 32.20	0	1458184..1459422	-	412	89256813	-	FTL_1528	-	major facilitator transporter
1366	 26.80	-1	1459525..1460289	-	254	89256814	-	FTL_1529	-	nicotinamide mononucleotide transport (NMT) family protein
1367	 33.11	0	1461047..1462396	-	449	89256815	rumA	FTL_1531	-	23S rRNA 5-methyluridine methyltransferase
1368	 32.64	0	1462485..1463057	-	190	89256816	-	FTL_1532	-	hypothetical protein
1369	 31.51	0	1463322..1463540	-	72	89256817	-	FTL_1533	-	DNA-directed RNA polymerase omega subunit
1370	 29.73	0	1463533..1464198	-	221	89256818	-	FTL_1534	-	uridine kinase
1371	 36.47	+1	1464209..1465036	-	275	89256819	-	FTL_1535	-	2-dehydro-3-deoxyphosphooctonate aldolase
1372	 36.75	+1	1465067..1465417	-	116	89256820	-	FTL_1536	-	iron-sulfur cluster insertion protein ErpA
1373	 35.88	0	1465423..1467504	-	693	89256821	-	FTL_1537	-	polynucleotide phosphorylase/polyadenylase
1374	 29.96	0	1467561..1467827	-	88	89256822	rpsO	FTL_1538	-	30S ribosomal protein S15
1375	 35.22	0	1467933..1469627	-	564	89256823	-	FTL_1539	-	penicillin binding protein (peptidoglycan synthetase)
1376	 28.21	-1	1469620..1469970	-	116	89256824	-	FTL_1540	-	hypothetical protein
1377	 33.33	0	1469967..1470884	-	305	89256825	-	FTL_1541	-	S-adenosyl-methyltransferase
1378	 33.05	0	1470890..1472989	-	699	89256826	-	FTL_1542	-	hypothetical protein
1379	 29.45	0	1473082..1473906	+	274	89256827	-	FTL_1543	-	formamidopyrimidine-DNA glycosylase
1380	 31.56	0	1473977..1474857	+	293	89256828	isftu1	FTL_1544	-	transposase
1381	 32.41	0	1474865..1475404	-	179	89256829	-	FTL_1545	-	glutamine amidotransferase subunit PdxT
1382	 39.12	+1	1475407..1476270	-	287	89256830	-	FTL_1546	-	pyridoxine biosynthesis protein
1383	 34.66	0	1476400..1478811	-	803	89256831	-	FTL_1547	-	DNA gyrase subunit B
1384	 33.96	0	1478993..1479793	+	266	89256832	-	FTL_1548	-	hypothetical protein
1385	 32.22	0	1479827..1480810	+	327	89256833	-	FTL_1549	-	tRNA-dihydrouridine synthase A
1386	 32.55	0	1480817..1481584	-	255	89256834	-	FTL_1550	-	lipoprotein
1387	 32.06	0	1482252..1482566	+	104	89256835	-	FTL_1551	-	hypothetical protein
1388	 31.50	0	1482574..1484487	-	637	89256836	-	FTL_1552	-	hypothetical protein
1389	 37.80	+1	1484657..1485820	+	387	89256837	sucC	FTL_1553	-	succinyl-CoA synthetase subunit beta
1390	 40.09	+2	1485852..1486724	+	290	89256838	-	FTL_1554	-	succinyl-CoA synthetase, alpha subunit
1391	 37.32	+1	1486834..1487259	+	141	89256839	-	FTL_1555	-	hypothetical protein
1392	 29.53	0	1487658..1488683	+	341	89256840	-	FTL_1556	-	hypothetical protein
1393	 30.98	0	1488815..1489495	-	226	89256841	-	FTL_1557	-	hypothetical protein
1394	 28.76	-1	1489504..1490028	-	174	89256842	-	FTL_1558	-	hypothetical protein
1395	 33.06	0	1494231..1494953	+	240	89256843	-	FTL_1566	-	CutC family protein
1396	 34.70	0	1494968..1496134	-	388	89256844	-	FTL_1567	-	major facilitator transporter
1397	 28.99	-1	1496245..1497165	+	306	89256845	-	FTL_1568	-	LysR family transcriptional regulator
1398	 31.36	0	1497208..1497867	+	219	89256846	-	FTL_1569	-	phosphoglycolate phosphatase
1399	 29.31	0	1497910..1499127	+	405	89256847	-	FTL_1570	-	phospholipase D family protein
1400	 36.80	+1	1499219..1500169	+	316	89256848	-	FTL_1571	-	thioredoxin reductase
1401	 28.64	-1	1500465..1501124	+	219	89256849	isftu2	FTL_1572	-	transposase
1402	 25.80	-1	1501135..1501824	+	229	89256850	-	FTL_1573	-	major facilitator transporter
1403	 26.08	-1	1501930..1502301	+	123	89256851	-	FTL_1574	-	hypothetical protein
1404	 29.87	0	1502373..1503209	-	278	89256852	-	FTL_1575	-	hypothetical protein
1405	 34.39	0	1503393..1505195	-	600	89256853	-	FTL_1576	-	DNA mismatch repair protein
1406	 34.52	0	1505203..1505538	-	111	89256854	-	FTL_1577	-	hypothetical protein
1407	 31.59	0	1505522..1505866	-	114	89256855	-	FTL_1578	-	hypothetical protein
1408	 37.92	+1	1505934..1506653	-	239	89256856	-	FTL_1579	-	hypothetical protein
1409	 32.43	0	1506807..1507694	+	295	89256857	-	FTL_1580	-	hypothetical protein
1410	 40.32	+2	1507913..1508728	+	271	89256858	-	FTL_1581	-	lipoprotein
1411	 30.03	0	1508981..1510162	-	393	89256859	-	FTL_1582	-	putrescine-binding periplasmic protein
1412	 33.40	0	1510246..1511655	+	469	89256860	-	FTL_1583	-	glutamate:gamma-aminobutyric acid antiporter family protein
1413	 30.17	0	1511757..1512863	+	368	89256861	-	FTL_1584	-	PerM family protein
1414	 32.99	0	1512857..1514599	+	580	89256862	-	FTL_1585	-	single-stranded-DNA-specific exonuclease
1415	 27.84	-1	1514596..1515378	+	260	89256863	-	FTL_1586	-	biotin--acetyl-CoA-carboxylase ligase
1416	 30.74	0	1515375..1516298	+	307	89256864	-	FTL_1587	-	lysyl-tRNA synthetase
1417	 30.61	0	1516303..1517148	-	281	89256865	-	FTL_1588	-	mechanosensitive ion channel protein
1418	 28.69	-1	1516986..1517717	-	243	89256866	isftu2	FTL_1589	-	transposase
1419	 29.81	0	1518304..1518984	-	226	89256867	-	FTL_1590	-	hypothetical protein
1420	 36.65	+1	1519078..1520433	-	451	89256868	-	FTL_1591	-	Acetyl-CoA carboxylase, biotin carboxylase subunit
1421	 37.34	+1	1520498..1520971	-	157	89256869	-	FTL_1592	-	Acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit
1422	 30.59	0	1520976..1521413	-	145	89256870	-	FTL_1593	-	3-dehydroquinate dehydratase
1423	 31.04	0	1521417..1522244	-	275	89256871	apaH	FTL_1594	-	diadenosine tetraphosphatase
1424	 31.18	0	1522256..1523044	-	262	89256872	ksgA	FTL_1595	-	dimethyladenosine transferase
1425	 32.41	0	1523046..1524455	-	469	89256873	-	FTL_1596	-	peptidyl-prolyl cis-trans isomerase (PPIase)
1426	 32.80	0	1524455..1527061	-	868	89256874	-	FTL_1597	-	organic solvent tolerance protein
1427	 34.88	0	1527187..1528932	+	581	89256875	argS	FTL_1598	-	arginyl-tRNA synthetase
1428	 37.47	+1	1528984..1529370	-	128	89256876	-	FTL_1599	-	hypothetical protein
1429	 30.73	0	1529789..1530709	-	306	89256877	-	FTL_1600	-	periplasmic L-asparaginase II precursor
1430	 31.84	0	1530970..1531437	-	155	89256878	-	FTL_1601	-	tRNA/rRNA methyltransferase
1431	 37.13	+1	1531440..1532414	-	324	89256879	-	FTL_1602	-	delta-aminolevulinic acid dehydratase
1432	 33.69	0	1532422..1532700	-	92	89256880	-	FTL_1603	-	RNA-binding protein
1433	 29.28	0	1532711..1533622	-	303	89256881	-	FTL_1604	-	DNA polymerase III, delta prime subunit
1434	 33.53	0	1533630..1534646	-	338	89256882	-	FTL_1605	-	putative periplasmic protease
1435	 33.33	0	1534658..1535287	-	209	89256883	-	FTL_1606	-	stringent starvation protein A, regulator of transcription
1436	 34.60	0	1535376..1535690	+	104	89256884	-	FTL_1607	-	anaerobic sulfite reductase subunit
1437	 31.44	0	1535711..1535974	+	87	89256885	-	FTL_1608	-	hypothetical protein
1438	 30.83	0	1536066..1537826	+	586	89256886	-	FTL_1609	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.