IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1303	 31.44	0	1386668..1387548	-	293	89256751	isftu1	FTL_1462	-	transposase
1304	 29.84	0	1387853..1388482	+	209	89256752	isftu2	FTL_1463	-	transposase
1305	 37.70	+1	1388576..1390522	-	648	89256753	-	FTL_1464	-	ATP-dependent metalloprotease
1306	 34.34	0	1390733..1390930	+	65	89256754	-	FTL_1465	-	hypothetical protein
1307	 33.85	0	1390974..1391549	+	191	89256755	-	FTL_1466	-	major facilitator transporter
1308	 29.84	0	1391767..1392396	+	209	89256756	isftu2	FTL_1467	-	transposase
1309	 37.70	+1	1392490..1394436	-	648	89256757	-	FTL_1468	-	ATP-dependent metalloprotease
1310	 34.34	0	1394647..1394844	+	65	89256758	-	FTL_1469	-	hypothetical protein
1311	 33.85	0	1394888..1395463	+	191	89256759	-	FTL_1470	-	major facilitator transporter
1312	 29.89	0	1395681..1396319	+	212	89256760	isftu2	FTL_1471	-	transposase
1313	 30.08	0	1396492..1396890	+	132	89256761	-	FTL_1472	-	hypothetical protein
1314	 35.57	0	1396896..1399718	-	940	89256762	-	FTL_1473	-	DNA excision repair enzyme, subunit A
1315	 34.37	0	1399757..1400239	-	160	89256763	-	FTL_1474	-	transcriptional elongation factor
1316	 35.90	+1	1400273..1400857	-	194	89256764	-	FTL_1475	-	Type IV pili fiber building block protein
1317	 32.59	0	1400858..1402480	-	540	89256765	-	FTL_1476	-	glucose-6-phosphate isomerase
1318	 28.44	-1	1402467..1403120	-	217	89256766	-	FTL_1477	-	thiamine pyrophospokinase
1319	 38.40	+1	1403186..1404646	-	486	89256767	-	FTL_1478	-	inosine-5-monophosphate dehydrogenase
1320	 35.21	0	1404747..1406186	-	479	89256768	-	FTL_1479	-	cytosol aminopeptidase
1321	 29.09	-1	1406352..1407434	+	360	89256769	-	FTL_1480	-	permease YjgP/YjgQ family protein
1322	 31.45	0	1407434..1408495	+	353	89256770	-	FTL_1481	-	permease YjgP/YjgQ family protein
1323	 31.74	0	1408503..1409756	+	417	89256771	-	FTL_1482	-	peptidase M16 family protein
1324	 30.72	0	1409763..1410986	+	407	89256772	-	FTL_1483	-	peptidase M16 family protein
1325	 29.36	0	1410987..1411565	+	192	89256773	-	FTL_1484	-	methylase
1326	 32.26	0	1411599..1412249	+	216	89256774	-	FTL_1485	-	hypothetical protein
1327	 33.01	0	1412302..1412913	-	203	89256775	-	FTL_1486	-	tRNA-(ms(2)io(6)a)-hydroxylase
1328	 33.21	0	1413029..1413832	+	267	89256776	-	FTL_1487	-	uridine phosphorylase
1329	 32.09	0	1413853..1414254	+	133	89256777	-	FTL_1488	-	cytidine deaminase
1330	 33.70	0	1414446..1417481	-	1011	89256778	-	FTL_1489	-	FAD-binding family protein
1331	 34.89	0	1417700..1419238	+	512	89256779	-	FTL_1490	-	phosphoglyceromutase
1332	 34.74	0	1419253..1420533	+	426	89256780	-	FTL_1491	-	seryl-tRNA synthetase
1333	 36.11	+1	1420643..1421542	+	299	89256781	-	FTL_1492	-	fructokinase
1334	 30.69	0	1421671..1422879	+	402	89256782	-	FTL_1493	-	polysaccharide biosynthesis protein (export protein)
1335	 33.73	0	1423111..1423620	-	169	89256783	-	FTL_1494	-	hypothetical protein
1336	 33.22	0	1423997..1425778	+	593	89256784	-	FTL_1495	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1337	 32.79	0	1425775..1427424	+	549	89256785	-	FTL_1496	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1338	 33.01	0	1427426..1428676	-	416	89256786	-	FTL_1497	-	C4-dicarboxylate transport protein
1339	 34.65	0	1428815..1429195	-	126	89256787	-	FTL_1498	-	translation initiation inhibitor
1340	 34.56	0	1429195..1430739	-	514	89256788	-	FTL_1499	-	sulfate permease family protein
1341	 30.19	0	1430858..1431334	-	158	89256789	-	FTL_1500	-	transposase
1342	 30.96	0	1431708..1432928	+	406	89256790	-	FTL_1502	-	major facilitator transporter
1343	 32.13	0	1432912..1434237	-	441	89256791	-	FTL_1503	-	deoxyguanosinetriphosphate triphosphohydrolase
1344	 38.13	+1	1434341..1436527	-	728	89256792	-	FTL_1504	-	peroxidase/catalase
1345	 31.56	0	1437326..1438206	-	293	89256793	isftu1	FTL_1505	-	transposase
1346	 34.67	0	1438513..1438962	-	149	89256794	-	FTL_1506	-	Short-chain dehydrogenase/reductase family protein
1347	 28.13	-1	1438968..1439294	-	108	89256795	-	FTL_1507	-	3-oxoacyl-[acyl-carrier protein] reductase
1348	 29.38	0	1440148..1440678	-	176	89256796	-	FTL_1509	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
1349	 36.37	+1	1440694..1442010	-	438	89256797	-	FTL_1510	-	glycerol-3-phosphate transporter
1350	 33.62	0	1442117..1443151	-	344	89256798	-	FTL_1511	-	glycerophosphoryl diester phosphodiesterase family protein
1351	 30.97	0	1443453..1444256	+	267	89256799	-	FTL_1512	-	hypothetical protein
1352	 33.01	0	1444253..1445185	+	310	89256800	-	FTL_1513	-	ABC transporter, ATP-binding protein
1353	 29.79	0	1445182..1445604	+	140	89256801	-	FTL_1514	-	ABC-2 type transport system permease protein
1354	 30.27	0	1445743..1446297	+	184	89256802	-	FTL_1515	-	ABC transporter, membrane protein
1355	 29.29	0	1446542..1447135	+	197	89256803	isftu2	FTL_1516	-	transposase
1356	 33.62	0	1447184..1447528	-	114	89256804	-	FTL_1517	-	hypothetical protein
1357	 36.83	+1	1448536..1449165	-	209	89256805	-	FTL_1520	-	uracil phosphoribosyltransferase
1358	 36.38	+1	1449357..1451651	-	764	89256806	-	FTL_1521	-	chitinase family 18 protein
1359	 34.34	0	1452185..1453381	+	398	89256807	-	FTL_1522	-	2-amino-3-ketobutyrate coenzyme A ligase
1360	 37.88	+1	1453404..1454459	+	351	89256808	tdh	FTL_1523	-	L-threonine 3-dehydrogenase
1361	 27.47	-1	1454461..1455723	+	420	89256809	-	FTL_1524	-	serine transporter
1362	 31.59	0	1455728..1456417	-	229	89256810	-	FTL_1525	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1363	 30.24	0	1456407..1456697	-	96	89256811	-	FTL_1526	-	cell division protein
1364	 35.96	+1	1456705..1458075	-	456	89256812	-	FTL_1527	-	enolase (2-phosphoglycerate dehydratase)
1365	 32.20	0	1458184..1459422	-	412	89256813	-	FTL_1528	-	major facilitator transporter
1366	 26.80	-1	1459525..1460289	-	254	89256814	-	FTL_1529	-	nicotinamide mononucleotide transport (NMT) family protein
1367	 33.11	0	1461047..1462396	-	449	89256815	rumA	FTL_1531	-	23S rRNA 5-methyluridine methyltransferase
1368	 32.64	0	1462485..1463057	-	190	89256816	-	FTL_1532	-	hypothetical protein
1369	 31.51	0	1463322..1463540	-	72	89256817	-	FTL_1533	-	DNA-directed RNA polymerase omega subunit
1370	 29.73	0	1463533..1464198	-	221	89256818	-	FTL_1534	-	uridine kinase
1371	 36.47	+1	1464209..1465036	-	275	89256819	-	FTL_1535	-	2-dehydro-3-deoxyphosphooctonate aldolase
1372	 36.75	+1	1465067..1465417	-	116	89256820	-	FTL_1536	-	iron-sulfur cluster insertion protein ErpA
1373	 35.88	0	1465423..1467504	-	693	89256821	-	FTL_1537	-	polynucleotide phosphorylase/polyadenylase
1374	 29.96	0	1467561..1467827	-	88	89256822	rpsO	FTL_1538	-	30S ribosomal protein S15
1375	 35.22	0	1467933..1469627	-	564	89256823	-	FTL_1539	-	penicillin binding protein (peptidoglycan synthetase)
1376	 28.21	-1	1469620..1469970	-	116	89256824	-	FTL_1540	-	hypothetical protein
1377	 33.33	0	1469967..1470884	-	305	89256825	-	FTL_1541	-	S-adenosyl-methyltransferase
1378	 33.05	0	1470890..1472989	-	699	89256826	-	FTL_1542	-	hypothetical protein
1379	 29.45	0	1473082..1473906	+	274	89256827	-	FTL_1543	-	formamidopyrimidine-DNA glycosylase
1380	 31.56	0	1473977..1474857	+	293	89256828	isftu1	FTL_1544	-	transposase
1381	 32.41	0	1474865..1475404	-	179	89256829	-	FTL_1545	-	glutamine amidotransferase subunit PdxT
1382	 39.12	+1	1475407..1476270	-	287	89256830	-	FTL_1546	-	pyridoxine biosynthesis protein
1383	 34.66	0	1476400..1478811	-	803	89256831	-	FTL_1547	-	DNA gyrase subunit B
1384	 33.96	0	1478993..1479793	+	266	89256832	-	FTL_1548	-	hypothetical protein
1385	 32.22	0	1479827..1480810	+	327	89256833	-	FTL_1549	-	tRNA-dihydrouridine synthase A
1386	 32.55	0	1480817..1481584	-	255	89256834	-	FTL_1550	-	lipoprotein
1387	 32.06	0	1482252..1482566	+	104	89256835	-	FTL_1551	-	hypothetical protein
1388	 31.50	0	1482574..1484487	-	637	89256836	-	FTL_1552	-	hypothetical protein
1389	 37.80	+1	1484657..1485820	+	387	89256837	sucC	FTL_1553	-	succinyl-CoA synthetase subunit beta
1390	 40.09	+2	1485852..1486724	+	290	89256838	-	FTL_1554	-	succinyl-CoA synthetase, alpha subunit
1391	 37.32	+1	1486834..1487259	+	141	89256839	-	FTL_1555	-	hypothetical protein
1392	 29.53	0	1487658..1488683	+	341	89256840	-	FTL_1556	-	hypothetical protein
1393	 30.98	0	1488815..1489495	-	226	89256841	-	FTL_1557	-	hypothetical protein
1394	 28.76	-1	1489504..1490028	-	174	89256842	-	FTL_1558	-	hypothetical protein
1395	 33.06	0	1494231..1494953	+	240	89256843	-	FTL_1566	-	CutC family protein
1396	 34.70	0	1494968..1496134	-	388	89256844	-	FTL_1567	-	major facilitator transporter
1397	 28.99	-1	1496245..1497165	+	306	89256845	-	FTL_1568	-	LysR family transcriptional regulator
1398	 31.36	0	1497208..1497867	+	219	89256846	-	FTL_1569	-	phosphoglycolate phosphatase
1399	 29.31	0	1497910..1499127	+	405	89256847	-	FTL_1570	-	phospholipase D family protein
1400	 36.80	+1	1499219..1500169	+	316	89256848	-	FTL_1571	-	thioredoxin reductase
1401	 28.64	-1	1500465..1501124	+	219	89256849	isftu2	FTL_1572	-	transposase
1402	 25.80	-1	1501135..1501824	+	229	89256850	-	FTL_1573	-	major facilitator transporter
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.