IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1247	 31.44	0	1330757..1331637	-	293	89256695	isftu1	FTL_1402	-	transposase
1248	 27.67	-1	1331929..1332564	-	211	89256696	-	FTL_1403	-	hypothetical protein
1249	 36.97	+1	1332675..1333031	-	118	89256697	rplT	FTL_1404	-	50S ribosomal protein L20
1250	 38.38	+1	1333067..1333264	-	65	89256698	-	FTL_1405	-	50S ribosomal protein L35
1251	 41.45	+2	1333307..1333774	-	155	89256699	-	FTL_1406	-	translation initiation factor IF-3
1252	 36.27	+1	1333850..1335754	-	634	89256700	-	FTL_1407	-	threonyl-tRNA synthetase
1253	 34.96	0	1336260..1337984	+	574	89256701	-	FTL_1408	-	chitin binding protein
1254	 31.23	0	1338357..1338737	-	126	89256702	-	FTL_1409	-	glycine cleavage system protein H
1255	 32.62	0	1338841..1339956	+	371	89256703	-	FTL_1410	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape ptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1256	 35.69	0	1339966..1340304	+	112	89256704	-	FTL_1411	-	hypothetical protein
1257	 33.00	0	1340304..1340906	+	200	89256705	-	FTL_1412	-	recombination protein recR
1258	 32.58	0	1340914..1343028	-	704	89256706	-	FTL_1413	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase/(p)ppGpp synthase
1259	 32.84	0	1343097..1344308	-	403	89256707	-	FTL_1414	-	hypothetical protein
1260	 32.04	0	1344310..1344774	-	154	89256708	-	FTL_1415	-	capsule biosynthesis protein CapC
1261	 34.41	0	1344799..1346007	-	402	89256709	-	FTL_1416	-	capsule biosynthesis protein capB
1262	 34.92	0	1346092..1347348	-	418	89256710	-	FTL_1417	-	major facilitator transporter
1263	 36.57	+1	1348020..1348883	-	287	89256711	-	FTL_1418	-	asparaginase
1264	 37.73	+1	1349099..1349917	-	272	89256712	-	FTL_1419	-	cyanophycinase
1265	 33.60	0	1350120..1351226	+	368	89256713	-	FTL_1420	-	carbohydrate/purine kinase pfkB family protein
1266	 30.47	0	1351508..1352170	-	220	89256714	-	FTL_1421	-	haloacid dehalogenase-like hydrolase family protein
1267	 29.78	0	1352189..1353202	-	337	89256715	-	FTL_1422	-	glycosyl transferases group 1 family protein
1268	 27.78	-1	1353205..1354212	-	335	89256716	-	FTL_1423	-	glycosyl transferase family protein
1269	 23.85	-2	1354229..1355188	-	319	89256717	-	FTL_1424	-	glycosyl transferase family protein
1270	 23.10	-2	1355197..1355958	-	253	89256718	-	FTL_1425	-	hypothetical protein
1271	 24.89	-2	1355962..1356636	-	224	89256719	-	FTL_1426	-	hypothetical protein
1272	 30.54	0	1356584..1357870	-	428	89256720	-	FTL_1427	-	hypothetical protein
1273	 28.28	-1	1357884..1359566	-	560	89256721	-	FTL_1428	-	ABC transporter, ATP-binding and membrane protein
1274	 30.41	0	1359563..1360792	-	409	89256722	-	FTL_1429	-	glycosyl transferases group 1 family protein
1275	 34.80	0	1360796..1361815	-	339	89256723	-	FTL_1430	-	UDP-glucose 4-epimerase
1276	 32.26	0	1361808..1363202	-	464	89256724	-	FTL_1431	-	sugar transferase family protein
1277	 37.22	+1	1363183..1363851	-	222	89256725	-	FTL_1432	-	D-ribulose-phosphate 3-epimerase
1278	 34.36	0	1363988..1364959	+	323	89256726	-	FTL_1433	-	arabinose phosphate isomerase
1279	 35.87	0	1364963..1365553	-	196	89256727	-	FTL_1434	-	DoxD-like family protein
1280	 25.53	-2	1365564..1365986	-	140	89256728	-	FTL_1435	-	hypothetical protein
1281	 27.50	-1	1366022..1366261	-	79	89256729	-	FTL_1436	-	hypothetical protein
1282	 32.35	0	1366258..1367067	-	269	89256730	-	FTL_1437	-	hypothetical protein
1283	 36.97	+1	1367064..1367393	-	109	89256731	-	FTL_1438	-	hypothetical protein
1284	 34.40	0	1367405..1367968	-	187	89256732	-	FTL_1439	-	arylsulfatase
1285	 37.70	+1	1367863..1368366	-	167	89256733	-	FTL_1440	-	beta-lactamase superfamily hydrolase
1286	 28.00	-1	1368672..1369346	+	224	89256734	isftu2	FTL_1441	-	transposase
1287	 36.91	+1	1369371..1370153	-	260	89256735	-	FTL_1442	-	enoyl-[acyl-carrier-protein] reductase (NADH)
1288	 36.55	+1	1370439..1371152	+	237	89256736	-	FTL_1443	-	hypothetical protein
1289	 31.71	0	1371166..1371411	+	81	89256737	-	FTL_1444	-	hypothetical protein
1290	 29.77	0	1371895..1372707	+	270	89256738	isftu2	FTL_1445	-	transposase
1291	 32.16	0	1372491..1373317	-	275	89256739	isftu1	FTL_1446	-	transposase
1292	 24.27	-2	1373395..1373769	-	124	89256740	-	FTL_1447	-	hypothetical protein
1293	 33.99	0	1373836..1375674	-	612	89256741	-	FTL_1448	-	DNA excision repair enzyme, subunit C (UvrABC system protein A)
1294	 28.22	-1	1375783..1376877	+	364	89256742	-	FTL_1449	-	ribonuclease D
1295	 32.35	0	1376906..1378120	+	404	89256743	-	FTL_1450	-	major facilitator transporter
1296	 35.45	0	1378117..1378494	-	125	89256744	-	FTL_1451	-	hypothetical protein
1297	 36.47	+1	1378881..1379135	-	84	89256745	rpmA	FTL_1452	-	50S ribosomal protein L27
1298	 38.73	+1	1379166..1379480	-	104	89256746	rplU	FTL_1453	-	50S ribosomal protein L21
1299	 34.95	0	1381543..1384263	-	906	89256747	-	FTL_1458	-	preprotein translocase subunit SecA
1300	 29.54	0	1384395..1385423	+	342	89256748	-	FTL_1459	-	hypothetical protein
1301	 27.56	-1	1385427..1385876	+	149	89256749	-	FTL_1460	-	hypothetical protein
1302	 33.33	0	1385873..1386595	-	240	89256750	-	FTL_1461	-	purine nucleoside phosphorylase
1303	 31.44	0	1386668..1387548	-	293	89256751	isftu1	FTL_1462	-	transposase
1304	 29.84	0	1387853..1388482	+	209	89256752	isftu2	FTL_1463	-	transposase
1305	 37.70	+1	1388576..1390522	-	648	89256753	-	FTL_1464	-	ATP-dependent metalloprotease
1306	 34.34	0	1390733..1390930	+	65	89256754	-	FTL_1465	-	hypothetical protein
1307	 33.85	0	1390974..1391549	+	191	89256755	-	FTL_1466	-	major facilitator transporter
1308	 29.84	0	1391767..1392396	+	209	89256756	isftu2	FTL_1467	-	transposase
1309	 37.70	+1	1392490..1394436	-	648	89256757	-	FTL_1468	-	ATP-dependent metalloprotease
1310	 34.34	0	1394647..1394844	+	65	89256758	-	FTL_1469	-	hypothetical protein
1311	 33.85	0	1394888..1395463	+	191	89256759	-	FTL_1470	-	major facilitator transporter
1312	 29.89	0	1395681..1396319	+	212	89256760	isftu2	FTL_1471	-	transposase
1313	 30.08	0	1396492..1396890	+	132	89256761	-	FTL_1472	-	hypothetical protein
1314	 35.57	0	1396896..1399718	-	940	89256762	-	FTL_1473	-	DNA excision repair enzyme, subunit A
1315	 34.37	0	1399757..1400239	-	160	89256763	-	FTL_1474	-	transcriptional elongation factor
1316	 35.90	+1	1400273..1400857	-	194	89256764	-	FTL_1475	-	Type IV pili fiber building block protein
1317	 32.59	0	1400858..1402480	-	540	89256765	-	FTL_1476	-	glucose-6-phosphate isomerase
1318	 28.44	-1	1402467..1403120	-	217	89256766	-	FTL_1477	-	thiamine pyrophospokinase
1319	 38.40	+1	1403186..1404646	-	486	89256767	-	FTL_1478	-	inosine-5-monophosphate dehydrogenase
1320	 35.21	0	1404747..1406186	-	479	89256768	-	FTL_1479	-	cytosol aminopeptidase
1321	 29.09	-1	1406352..1407434	+	360	89256769	-	FTL_1480	-	permease YjgP/YjgQ family protein
1322	 31.45	0	1407434..1408495	+	353	89256770	-	FTL_1481	-	permease YjgP/YjgQ family protein
1323	 31.74	0	1408503..1409756	+	417	89256771	-	FTL_1482	-	peptidase M16 family protein
1324	 30.72	0	1409763..1410986	+	407	89256772	-	FTL_1483	-	peptidase M16 family protein
1325	 29.36	0	1410987..1411565	+	192	89256773	-	FTL_1484	-	methylase
1326	 32.26	0	1411599..1412249	+	216	89256774	-	FTL_1485	-	hypothetical protein
1327	 33.01	0	1412302..1412913	-	203	89256775	-	FTL_1486	-	tRNA-(ms(2)io(6)a)-hydroxylase
1328	 33.21	0	1413029..1413832	+	267	89256776	-	FTL_1487	-	uridine phosphorylase
1329	 32.09	0	1413853..1414254	+	133	89256777	-	FTL_1488	-	cytidine deaminase
1330	 33.70	0	1414446..1417481	-	1011	89256778	-	FTL_1489	-	FAD-binding family protein
1331	 34.89	0	1417700..1419238	+	512	89256779	-	FTL_1490	-	phosphoglyceromutase
1332	 34.74	0	1419253..1420533	+	426	89256780	-	FTL_1491	-	seryl-tRNA synthetase
1333	 36.11	+1	1420643..1421542	+	299	89256781	-	FTL_1492	-	fructokinase
1334	 30.69	0	1421671..1422879	+	402	89256782	-	FTL_1493	-	polysaccharide biosynthesis protein (export protein)
1335	 33.73	0	1423111..1423620	-	169	89256783	-	FTL_1494	-	hypothetical protein
1336	 33.22	0	1423997..1425778	+	593	89256784	-	FTL_1495	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1337	 32.79	0	1425775..1427424	+	549	89256785	-	FTL_1496	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1338	 33.01	0	1427426..1428676	-	416	89256786	-	FTL_1497	-	C4-dicarboxylate transport protein
1339	 34.65	0	1428815..1429195	-	126	89256787	-	FTL_1498	-	translation initiation inhibitor
1340	 34.56	0	1429195..1430739	-	514	89256788	-	FTL_1499	-	sulfate permease family protein
1341	 30.19	0	1430858..1431334	-	158	89256789	-	FTL_1500	-	transposase
1342	 30.96	0	1431708..1432928	+	406	89256790	-	FTL_1502	-	major facilitator transporter
1343	 32.13	0	1432912..1434237	-	441	89256791	-	FTL_1503	-	deoxyguanosinetriphosphate triphosphohydrolase
1344	 38.13	+1	1434341..1436527	-	728	89256792	-	FTL_1504	-	peroxidase/catalase
1345	 31.56	0	1437326..1438206	-	293	89256793	isftu1	FTL_1505	-	transposase
1346	 34.67	0	1438513..1438962	-	149	89256794	-	FTL_1506	-	Short-chain dehydrogenase/reductase family protein
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.