IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1200	 32.75	0	1281238..1281408	-	56	89256648	-	FTL_1347	-	hypothetical protein
1201	 29.64	0	1281701..1282513	+	270	89256649	-	FTL_1348	-	transposase
1202	 32.16	0	1282297..1283123	-	275	89256650	isftu1	FTL_1349	-	transposase
1203	 33.14	0	1283273..1285357	-	694	89256651	-	FTL_1350	-	glycyl-tRNA synthetase beta subunit
1204	 26.96	-1	1285550..1286224	+	224	89256652	-	FTL_1351	-	TatD related DNAse family protein
1205	 26.29	-1	1286228..1287277	+	349	89256653	-	FTL_1352	-	DNA replication and repair protein recF
1206	 26.87	-1	1287299..1287592	+	97	89256654	-	FTL_1353	-	hypothetical protein
1207	 33.22	0	1287886..1288803	-	305	89256655	-	FTL_1354	-	hypothetical protein
1208	 33.10	0	1290276..1291139	-	287	89256656	-	FTL_1357	-	UTP--glucose-1-phosphate uridylyltransferase
1209	 32.37	0	1291156..1292295	-	379	89256657	-	FTL_1358	-	cation-efflux family protein
1210	 31.75	0	1292386..1292955	-	189	89256658	-	FTL_1359	-	hypothetical protein
1211	 31.84	0	1293823..1294023	-	66	89256659	rpsU	FTL_1360	-	30S ribosomal protein S21
1212	 34.31	0	1294796..1294999	+	67	89256660	-	FTL_1361	-	cold shock protein
1213	 31.81	0	1295070..1296056	-	328	89256661	-	FTL_1362	-	hypothetical protein
1214	 32.43	0	1296262..1297260	+	332	89256662	-	FTL_1363	-	hypothetical protein
1215	 32.50	0	1297284..1298003	-	239	89256663	-	FTL_1364	-	hypothetical protein
1216	 33.10	0	1298404..1298823	+	139	89256664	-	FTL_1365	-	hypothetical protein
1217	 33.96	0	1298928..1299245	+	105	89256665	-	FTL_1366	-	membrane fusion protein, putative
1218	 29.98	0	1299242..1300045	+	267	89256666	-	FTL_1367	-	hypothetical protein
1219	 29.63	0	1300042..1300608	+	188	89256667	-	FTL_1368	-	hypothetical protein
1220	 31.44	0	1300731..1301611	-	293	89256668	isftu1	FTL_1369	-	transposase
1221	 33.46	0	1301987..1302802	-	271	89256669	-	FTL_1370	-	hypothetical protein
1222	 42.82	+2	1303481..1304344	-	287	89256670	-	FTL_1371	-	hypothetical protein
1223	 35.19	0	1304334..1305683	-	449	89256671	-	FTL_1372	-	lipoprotein
1224	 35.54	0	1306156..1306653	+	165	89256672	-	FTL_1373	-	hypothetical protein
1225	 31.86	0	1306861..1308687	+	608	89256673	-	FTL_1374	-	organic solvent tolerance protein
1226	 30.89	0	1308905..1309273	+	122	89256674	-	FTL_1375	-	heat shock protein 15 (HSP15)
1227	 32.93	0	1309308..1310801	-	497	89256675	-	FTL_1376	-	carbohydrate kinase family protein (YjeF-related protein)
1228	 30.09	0	1311108..1311755	-	215	89256676	-	FTL_1377	-	hypothetical protein
1229	 32.27	0	1314045..1314515	-	156	89256677	-	FTL_1383	-	glutathione peroxidase
1230	 31.61	0	1314544..1314891	-	115	89256678	-	FTL_1384	-	hypothetical protein
1231	 26.40	-1	1314988..1315434	+	148	89256679	-	FTL_1385	-	hypothetical protein
1232	 29.38	0	1315609..1316265	-	218	89256680	isftu2	FTL_1386	-	transposase
1233	 34.14	0	1317524..1319011	-	495	89256681	-	FTL_1388	-	L-aspartate oxidase
1234	 33.91	0	1319014..1319877	-	287	89256682	-	FTL_1389	-	nicotinate-nucleotide pyrophosphorylase
1235	 35.58	0	1319886..1320911	-	341	89256683	-	FTL_1390	-	quinolinate synthetase
1236	 34.03	0	1320932..1321504	-	190	89256684	-	FTL_1391	-	guanylate kinase
1237	 34.68	0	1321621..1323330	-	569	89256685	-	FTL_1392	-	cold-shock DEAD-box protein A
1238	 36.92	+1	1323365..1323643	-	92	89256686	-	FTL_1393	-	peptidyl-prolyl cis-trans isomerase
1239	 33.33	0	1323738..1325132	-	464	89256687	-	FTL_1394	-	major facilitator superfamily galactose-proton symporter
1240	 33.84	0	1325164..1326543	-	459	89256688	-	FTL_1395	-	major facilitator superfamily galactose-proton symporter
1241	 33.14	0	1326634..1327659	+	341	89256689	-	FTL_1396	-	galactose-1-phosphate uridylyltransferase
1242	 32.55	0	1327662..1328810	+	382	89256690	-	FTL_1397	-	galactokinase
1243	 31.57	0	1328807..1329202	-	131	89256691	-	FTL_1398	-	hypothetical protein
1244	 32.80	0	1329195..1329947	-	250	89256692	-	FTL_1399	-	3-deoxy-manno-octulosonate cytidylyltransferase
1245	 29.32	0	1329940..1330188	-	82	89256693	-	FTL_1400	-	hypothetical protein
1246	 30.77	0	1330513..1330785	-	90	89256694	-	FTL_1401	-	hypothetical protein
1247	 31.44	0	1330757..1331637	-	293	89256695	isftu1	FTL_1402	-	transposase
1248	 27.67	-1	1331929..1332564	-	211	89256696	-	FTL_1403	-	hypothetical protein
1249	 36.97	+1	1332675..1333031	-	118	89256697	rplT	FTL_1404	-	50S ribosomal protein L20
1250	 38.38	+1	1333067..1333264	-	65	89256698	-	FTL_1405	-	50S ribosomal protein L35
1251	 41.45	+2	1333307..1333774	-	155	89256699	-	FTL_1406	-	translation initiation factor IF-3
1252	 36.27	+1	1333850..1335754	-	634	89256700	-	FTL_1407	-	threonyl-tRNA synthetase
1253	 34.96	0	1336260..1337984	+	574	89256701	-	FTL_1408	-	chitin binding protein
1254	 31.23	0	1338357..1338737	-	126	89256702	-	FTL_1409	-	glycine cleavage system protein H
1255	 32.62	0	1338841..1339956	+	371	89256703	-	FTL_1410	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape ptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1256	 35.69	0	1339966..1340304	+	112	89256704	-	FTL_1411	-	hypothetical protein
1257	 33.00	0	1340304..1340906	+	200	89256705	-	FTL_1412	-	recombination protein recR
1258	 32.58	0	1340914..1343028	-	704	89256706	-	FTL_1413	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase/(p)ppGpp synthase
1259	 32.84	0	1343097..1344308	-	403	89256707	-	FTL_1414	-	hypothetical protein
1260	 32.04	0	1344310..1344774	-	154	89256708	-	FTL_1415	-	capsule biosynthesis protein CapC
1261	 34.41	0	1344799..1346007	-	402	89256709	-	FTL_1416	-	capsule biosynthesis protein capB
1262	 34.92	0	1346092..1347348	-	418	89256710	-	FTL_1417	-	major facilitator transporter
1263	 36.57	+1	1348020..1348883	-	287	89256711	-	FTL_1418	-	asparaginase
1264	 37.73	+1	1349099..1349917	-	272	89256712	-	FTL_1419	-	cyanophycinase
1265	 33.60	0	1350120..1351226	+	368	89256713	-	FTL_1420	-	carbohydrate/purine kinase pfkB family protein
1266	 30.47	0	1351508..1352170	-	220	89256714	-	FTL_1421	-	haloacid dehalogenase-like hydrolase family protein
1267	 29.78	0	1352189..1353202	-	337	89256715	-	FTL_1422	-	glycosyl transferases group 1 family protein
1268	 27.78	-1	1353205..1354212	-	335	89256716	-	FTL_1423	-	glycosyl transferase family protein
1269	 23.85	-2	1354229..1355188	-	319	89256717	-	FTL_1424	-	glycosyl transferase family protein
1270	 23.10	-2	1355197..1355958	-	253	89256718	-	FTL_1425	-	hypothetical protein
1271	 24.89	-2	1355962..1356636	-	224	89256719	-	FTL_1426	-	hypothetical protein
1272	 30.54	0	1356584..1357870	-	428	89256720	-	FTL_1427	-	hypothetical protein
1273	 28.28	-1	1357884..1359566	-	560	89256721	-	FTL_1428	-	ABC transporter, ATP-binding and membrane protein
1274	 30.41	0	1359563..1360792	-	409	89256722	-	FTL_1429	-	glycosyl transferases group 1 family protein
1275	 34.80	0	1360796..1361815	-	339	89256723	-	FTL_1430	-	UDP-glucose 4-epimerase
1276	 32.26	0	1361808..1363202	-	464	89256724	-	FTL_1431	-	sugar transferase family protein
1277	 37.22	+1	1363183..1363851	-	222	89256725	-	FTL_1432	-	D-ribulose-phosphate 3-epimerase
1278	 34.36	0	1363988..1364959	+	323	89256726	-	FTL_1433	-	arabinose phosphate isomerase
1279	 35.87	0	1364963..1365553	-	196	89256727	-	FTL_1434	-	DoxD-like family protein
1280	 25.53	-2	1365564..1365986	-	140	89256728	-	FTL_1435	-	hypothetical protein
1281	 27.50	-1	1366022..1366261	-	79	89256729	-	FTL_1436	-	hypothetical protein
1282	 32.35	0	1366258..1367067	-	269	89256730	-	FTL_1437	-	hypothetical protein
1283	 36.97	+1	1367064..1367393	-	109	89256731	-	FTL_1438	-	hypothetical protein
1284	 34.40	0	1367405..1367968	-	187	89256732	-	FTL_1439	-	arylsulfatase
1285	 37.70	+1	1367863..1368366	-	167	89256733	-	FTL_1440	-	beta-lactamase superfamily hydrolase
1286	 28.00	-1	1368672..1369346	+	224	89256734	isftu2	FTL_1441	-	transposase
1287	 36.91	+1	1369371..1370153	-	260	89256735	-	FTL_1442	-	enoyl-[acyl-carrier-protein] reductase (NADH)
1288	 36.55	+1	1370439..1371152	+	237	89256736	-	FTL_1443	-	hypothetical protein
1289	 31.71	0	1371166..1371411	+	81	89256737	-	FTL_1444	-	hypothetical protein
1290	 29.77	0	1371895..1372707	+	270	89256738	isftu2	FTL_1445	-	transposase
1291	 32.16	0	1372491..1373317	-	275	89256739	isftu1	FTL_1446	-	transposase
1292	 24.27	-2	1373395..1373769	-	124	89256740	-	FTL_1447	-	hypothetical protein
1293	 33.99	0	1373836..1375674	-	612	89256741	-	FTL_1448	-	DNA excision repair enzyme, subunit C (UvrABC system protein A)
1294	 28.22	-1	1375783..1376877	+	364	89256742	-	FTL_1449	-	ribonuclease D
1295	 32.35	0	1376906..1378120	+	404	89256743	-	FTL_1450	-	major facilitator transporter
1296	 35.45	0	1378117..1378494	-	125	89256744	-	FTL_1451	-	hypothetical protein
1297	 36.47	+1	1378881..1379135	-	84	89256745	rpmA	FTL_1452	-	50S ribosomal protein L27
1298	 38.73	+1	1379166..1379480	-	104	89256746	rplU	FTL_1453	-	50S ribosomal protein L21
1299	 34.95	0	1381543..1384263	-	906	89256747	-	FTL_1458	-	preprotein translocase subunit SecA
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.