IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1161	 33.92	0	1238465..1238806	-	113	89256609	-	FTL_1300	-	hypothetical protein
1162	 29.58	0	1239087..1239725	+	212	89256610	isftu2	FTL_1301	-	transposase
1163	 33.33	0	1239801..1240532	+	243	89256611	-	FTL_1302	-	phenol hydroxylase
1164	 36.07	+1	1240654..1240872	+	72	161353780	rpmE	FTL_1303	-	50S ribosomal protein L31
1165	 32.93	0	1241081..1242586	-	501	89256613	-	FTL_1304	-	glutamate--cysteine ligase
1166	 30.09	0	1242639..1244180	-	513	89256614	-	FTL_1305	-	virulence factor MviN
1167	 34.56	0	1244203..1245264	-	353	89256615	-	FTL_1306	-	hypothetical protein
1168	 34.13	0	1245347..1245724	-	125	89256616	-	FTL_1307	-	nucleotide-binding protein, yjeE
1169	 31.73	0	1245735..1246916	-	393	89256617	-	FTL_1308	-	FolC bifunctional protein
1170	 37.10	+1	1246931..1247833	-	300	89256618	-	FTL_1309	-	Acetyl-CoA carboxylase beta subunit
1171	 36.17	+1	1247875..1248297	-	140	89256619	-	FTL_1310	-	nucleoside diphosphate kinase
1172	 37.42	+1	1248370..1250010	-	546	89256620	-	FTL_1311	-	CTP synthetase
1173	 31.58	0	1250323..1251177	+	284	89256621	-	FTL_1312	-	S-transferase
1174	 35.37	0	1251093..1251827	+	244	89256622	-	FTL_1313	-	short-chain fatty acids transporter
1175	 27.50	-1	1252110..1253018	-	302	89256623	-	FTL_1314	-	hypothetical protein
1176	 24.37	-2	1253064..1253498	-	144	89256624	-	FTL_1315	-	hypothetical protein
1177	 31.67	0	1253489..1254369	+	293	89256625	isftu1	FTL_1316	-	transposase
1178	 25.80	-1	1254565..1255560	-	331	89256626	-	FTL_1317	-	hypothetical protein
1179	 30.81	0	1255917..1256432	+	171	89256627	-	FTL_1319	-	transposase
1180	 30.54	0	1256815..1257387	-	190	89256628	-	FTL_1320	-	hypothetical protein
1181	 29.25	0	1257374..1257667	-	97	89256629	-	FTL_1321	-	hypothetical protein
1182	 29.98	0	1261927..1262403	-	158	89256630	-	FTL_1326	-	hypothetical protein
1183	 27.83	-1	1262508..1263689	-	393	89256631	-	FTL_1327	-	hypothetical protein
1184	 38.00	+1	1264352..1265530	-	392	89256632	-	FTL_1328	-	outer membrane associated protein
1185	 33.74	0	1265640..1265885	-	81	89256633	-	FTL_1329	-	ferredoxin
1186	 32.52	0	1265890..1266378	-	162	89256634	-	FTL_1330	-	phosphopantetheine adenylyltransferase
1187	 34.06	0	1266390..1266941	-	183	89256635	-	FTL_1331	-	hypothetical protein
1188	 33.33	0	1266955..1267311	-	118	89256636	-	FTL_1332	-	hesB family protein
1189	 34.48	0	1267332..1268555	-	407	89256637	-	FTL_1333	-	selenocysteine lyase
1190	 36.03	+1	1268658..1270031	-	457	89256638	-	FTL_1334	-	L-serine dehydratase 1
1191	 27.06	-1	1270087..1270755	-	222	89256639	-	FTL_1335	-	hypothetical protein
1192	 31.20	0	1270781..1271623	-	280	89256640	-	FTL_1336	-	prephenate dehydratase
1193	 32.33	0	1273399..1274496	-	365	89256641	-	FTL_1338	-	alanine racemase
1194	 31.44	0	1274601..1275971	-	456	89256642	-	FTL_1339	-	proton-dependent oligopeptide transport (POT) family protein
1195	 31.21	0	1276096..1276803	-	235	89256643	-	FTL_1340	-	hypothetical protein
1196	 29.82	0	1276815..1277213	-	132	89256644	-	FTL_1341	-	hypothetical protein
1197	 32.06	0	1277293..1278315	+	340	89256645	-	FTL_1342	-	hypothetical protein
1198	 33.33	0	1278304..1278609	-	101	89256646	-	FTL_1343	-	hypothetical protein
1199	 28.45	-1	1278606..1278953	-	115	89256647	-	FTL_1344	-	hypothetical protein
1200	 32.75	0	1281238..1281408	-	56	89256648	-	FTL_1347	-	hypothetical protein
1201	 29.64	0	1281701..1282513	+	270	89256649	-	FTL_1348	-	transposase
1202	 32.16	0	1282297..1283123	-	275	89256650	isftu1	FTL_1349	-	transposase
1203	 33.14	0	1283273..1285357	-	694	89256651	-	FTL_1350	-	glycyl-tRNA synthetase beta subunit
1204	 26.96	-1	1285550..1286224	+	224	89256652	-	FTL_1351	-	TatD related DNAse family protein
1205	 26.29	-1	1286228..1287277	+	349	89256653	-	FTL_1352	-	DNA replication and repair protein recF
1206	 26.87	-1	1287299..1287592	+	97	89256654	-	FTL_1353	-	hypothetical protein
1207	 33.22	0	1287886..1288803	-	305	89256655	-	FTL_1354	-	hypothetical protein
1208	 33.10	0	1290276..1291139	-	287	89256656	-	FTL_1357	-	UTP--glucose-1-phosphate uridylyltransferase
1209	 32.37	0	1291156..1292295	-	379	89256657	-	FTL_1358	-	cation-efflux family protein
1210	 31.75	0	1292386..1292955	-	189	89256658	-	FTL_1359	-	hypothetical protein
1211	 31.84	0	1293823..1294023	-	66	89256659	rpsU	FTL_1360	-	30S ribosomal protein S21
1212	 34.31	0	1294796..1294999	+	67	89256660	-	FTL_1361	-	cold shock protein
1213	 31.81	0	1295070..1296056	-	328	89256661	-	FTL_1362	-	hypothetical protein
1214	 32.43	0	1296262..1297260	+	332	89256662	-	FTL_1363	-	hypothetical protein
1215	 32.50	0	1297284..1298003	-	239	89256663	-	FTL_1364	-	hypothetical protein
1216	 33.10	0	1298404..1298823	+	139	89256664	-	FTL_1365	-	hypothetical protein
1217	 33.96	0	1298928..1299245	+	105	89256665	-	FTL_1366	-	membrane fusion protein, putative
1218	 29.98	0	1299242..1300045	+	267	89256666	-	FTL_1367	-	hypothetical protein
1219	 29.63	0	1300042..1300608	+	188	89256667	-	FTL_1368	-	hypothetical protein
1220	 31.44	0	1300731..1301611	-	293	89256668	isftu1	FTL_1369	-	transposase
1221	 33.46	0	1301987..1302802	-	271	89256669	-	FTL_1370	-	hypothetical protein
1222	 42.82	+2	1303481..1304344	-	287	89256670	-	FTL_1371	-	hypothetical protein
1223	 35.19	0	1304334..1305683	-	449	89256671	-	FTL_1372	-	lipoprotein
1224	 35.54	0	1306156..1306653	+	165	89256672	-	FTL_1373	-	hypothetical protein
1225	 31.86	0	1306861..1308687	+	608	89256673	-	FTL_1374	-	organic solvent tolerance protein
1226	 30.89	0	1308905..1309273	+	122	89256674	-	FTL_1375	-	heat shock protein 15 (HSP15)
1227	 32.93	0	1309308..1310801	-	497	89256675	-	FTL_1376	-	carbohydrate kinase family protein (YjeF-related protein)
1228	 30.09	0	1311108..1311755	-	215	89256676	-	FTL_1377	-	hypothetical protein
1229	 32.27	0	1314045..1314515	-	156	89256677	-	FTL_1383	-	glutathione peroxidase
1230	 31.61	0	1314544..1314891	-	115	89256678	-	FTL_1384	-	hypothetical protein
1231	 26.40	-1	1314988..1315434	+	148	89256679	-	FTL_1385	-	hypothetical protein
1232	 29.38	0	1315609..1316265	-	218	89256680	isftu2	FTL_1386	-	transposase
1233	 34.14	0	1317524..1319011	-	495	89256681	-	FTL_1388	-	L-aspartate oxidase
1234	 33.91	0	1319014..1319877	-	287	89256682	-	FTL_1389	-	nicotinate-nucleotide pyrophosphorylase
1235	 35.58	0	1319886..1320911	-	341	89256683	-	FTL_1390	-	quinolinate synthetase
1236	 34.03	0	1320932..1321504	-	190	89256684	-	FTL_1391	-	guanylate kinase
1237	 34.68	0	1321621..1323330	-	569	89256685	-	FTL_1392	-	cold-shock DEAD-box protein A
1238	 36.92	+1	1323365..1323643	-	92	89256686	-	FTL_1393	-	peptidyl-prolyl cis-trans isomerase
1239	 33.33	0	1323738..1325132	-	464	89256687	-	FTL_1394	-	major facilitator superfamily galactose-proton symporter
1240	 33.84	0	1325164..1326543	-	459	89256688	-	FTL_1395	-	major facilitator superfamily galactose-proton symporter
1241	 33.14	0	1326634..1327659	+	341	89256689	-	FTL_1396	-	galactose-1-phosphate uridylyltransferase
1242	 32.55	0	1327662..1328810	+	382	89256690	-	FTL_1397	-	galactokinase
1243	 31.57	0	1328807..1329202	-	131	89256691	-	FTL_1398	-	hypothetical protein
1244	 32.80	0	1329195..1329947	-	250	89256692	-	FTL_1399	-	3-deoxy-manno-octulosonate cytidylyltransferase
1245	 29.32	0	1329940..1330188	-	82	89256693	-	FTL_1400	-	hypothetical protein
1246	 30.77	0	1330513..1330785	-	90	89256694	-	FTL_1401	-	hypothetical protein
1247	 31.44	0	1330757..1331637	-	293	89256695	isftu1	FTL_1402	-	transposase
1248	 27.67	-1	1331929..1332564	-	211	89256696	-	FTL_1403	-	hypothetical protein
1249	 36.97	+1	1332675..1333031	-	118	89256697	rplT	FTL_1404	-	50S ribosomal protein L20
1250	 38.38	+1	1333067..1333264	-	65	89256698	-	FTL_1405	-	50S ribosomal protein L35
1251	 41.45	+2	1333307..1333774	-	155	89256699	-	FTL_1406	-	translation initiation factor IF-3
1252	 36.27	+1	1333850..1335754	-	634	89256700	-	FTL_1407	-	threonyl-tRNA synthetase
1253	 34.96	0	1336260..1337984	+	574	89256701	-	FTL_1408	-	chitin binding protein
1254	 31.23	0	1338357..1338737	-	126	89256702	-	FTL_1409	-	glycine cleavage system protein H
1255	 32.62	0	1338841..1339956	+	371	89256703	-	FTL_1410	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape ptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1256	 35.69	0	1339966..1340304	+	112	89256704	-	FTL_1411	-	hypothetical protein
1257	 33.00	0	1340304..1340906	+	200	89256705	-	FTL_1412	-	recombination protein recR
1258	 32.58	0	1340914..1343028	-	704	89256706	-	FTL_1413	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase/(p)ppGpp synthase
1259	 32.84	0	1343097..1344308	-	403	89256707	-	FTL_1414	-	hypothetical protein
1260	 32.04	0	1344310..1344774	-	154	89256708	-	FTL_1415	-	capsule biosynthesis protein CapC
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.