IslandPathversion 1.0

IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.49 STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1102	 32.85	0	1179403..1179813	-	136	89256550	-	FTL_1231	-	hypothetical protein
1103	 30.49	0	1179966..1181339	+	457	89256551	trkA	FTL_1232	-	potassium transporter peripheral membrane component
1104	 30.73	0	1181398..1182819	+	473	89256552	-	FTL_1233	-	amino acid antiporter
1105	 24.03	-2	1182824..1183210	+	128	89256553	-	FTL_1234	-	hypothetical protein
1106	 32.88	0	1183781..1183999	-	72	89256554	-	FTL_1236	-	translation initiation factor IF
1107	 34.64	0	1184159..1184998	+	279	89256555	-	FTL_1237	-	hypothetical protein
1108	 20.97	-2	1184995..1185261	+	88	89256556	-	FTL_1238	-	hypothetical protein
1109	 35.66	0	1185342..1186718	+	458	89256557	-	FTL_1239	-	signal recognition particle protein, Ffh
1110	 34.05	0	1186750..1187862	+	370	89256558	-	FTL_1240	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1111	 31.44	0	1188050..1188930	-	293	89256559	isftu1	FTL_1241	-	transposase
1112	 30.77	0	1188954..1189187	-	77	89256560	-	FTL_1242	-	ThiJ/PfpI family protein
1113	 33.93	0	1189178..1189510	-	110	89256561	-	FTL_1243	-	hypothetical protein
1114	 33.84	0	1189794..1190582	+	262	89256562	-	FTL_1244	-	exodeoxyribonuclease III
1115	 32.63	0	1190603..1191310	+	235	89256563	-	FTL_1245	-	short chain dehydrogenase
1116	 29.96	0	1191313..1191816	+	167	89256564	-	FTL_1246	-	hypothetical protein
1117	 27.92	-1	1191816..1192535	+	239	89256565	-	FTL_1247	-	hypothetical protein
1118	 36.05	+1	1192573..1193934	+	453	89256566	-	FTL_1248	-	glutathione reductase
1119	 33.64	0	1193945..1194265	+	106	89256567	-	FTL_1249	-	hypothetical protein
1120	 28.53	-1	1194509..1195174	+	221	89256568	isftu2	FTL_1250	-	transposase
1121	 35.15	0	1195261..1196802	+	513	89256569	-	FTL_1251	-	proton-dependent oligopeptide transport (POT) family protein
1122	 32.35	0	1196799..1198124	-	441	89256570	-	FTL_1252	-	ATP-dependent RNA helicase RhlE
1123	 32.04	0	1198254..1198871	+	205	89256571	folE	FTL_1253	-	GTP cyclohydrolase I
1124	 36.12	+1	1201268..1202272	+	334	89256572	-	FTL_1258	-	aldo/keto reductase
1125	 31.35	0	1203492..1204046	-	184	89256573	-	FTL_1261	-	anthranilate synthase component II
1126	 29.88	0	1204048..1205811	-	587	89256574	-	FTL_1262	-	chorismate binding family protein
1127	 28.96	-1	1205804..1207174	-	456	89256575	-	FTL_1263	-	AMP-binding family protein
1128	 26.84	-1	1207256..1207609	+	117	89256576	-	FTL_1264	-	dihydroneopterin aldolase
1129	 29.70	0	1207611..1208876	+	421	89256577	-	FTL_1265	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase
1130	 32.46	0	1208889..1209809	+	306	89256578	-	FTL_1266	-	lipase/esterase
1131	 28.74	-1	1209825..1210325	+	166	89256579	-	FTL_1267	-	hypothetical protein
1132	 31.24	0	1211487..1212773	-	428	89256580	-	FTL_1271	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1133	 31.10	0	1212864..1213805	+	313	89256581	-	FTL_1272	-	biotin synthase
1134	 30.23	0	1213799..1214926	+	375	89256582	-	FTL_1273	-	8-amino-7-oxononanoate synthase
1135	 25.07	-2	1214904..1215641	+	245	89256583	-	FTL_1274	-	biotin synthesis protein BioC
1136	 30.30	0	1215645..1216304	+	219	89256584	-	FTL_1275	-	dethiobiotin synthetase
1137	 27.33	-1	1216412..1217227	-	271	89256585	-	FTL_1276	-	bifunctional biotin operon repressor/biotin synthetase BirA
1138	 33.22	0	1217250..1218134	-	294	89256586	-	FTL_1277	-	ROK family protein
1139	 30.32	0	1218136..1219395	-	419	89256587	-	FTL_1278	-	major facilitator transporter
1140	 33.33	0	1219845..1220399	+	184	89256588	-	FTL_1279	-	acetoacetate decarboxylase, fragment
1141	 33.88	0	1220421..1220603	+	60	89256589	-	FTL_1280	-	short-chain dehydrogenase/oxidoreductase
1142	 35.83	0	1220604..1221203	+	199	89256590	-	FTL_1281	-	D-Beta-hydroxybutyrate dehydrogenase,psuedogene
1143	 30.16	0	1221264..1222931	+	555	89256591	-	FTL_1282	-	Beta-glucosidase-related glycosidase
1144	 35.26	0	1222952..1224247	-	431	89256592	-	FTL_1283	-	glutamate-1-semialdehyde-2,1-aminomutase
1145	 32.10	0	1224237..1225211	-	324	89256593	-	FTL_1284	-	glutathione synthetase
1146	 32.17	0	1225215..1226156	-	313	89256594	-	FTL_1285	-	methionyl-tRNA formyltransferase
1147	 33.83	0	1226161..1226559	-	132	89256595	-	FTL_1286	-	hypothetical protein
1148	 30.92	0	1226661..1228814	-	717	89256596	-	FTL_1287	-	23S rRNA m(2)G2445 methyltransferase
1149	 26.85	-1	1228889..1229443	-	184	89256597	-	FTL_1288	-	fatty acid hydroxylase
1150	 25.66	-2	1230409..1230903	-	164	89256598	-	FTL_1289	-	hypothetical protein
1151	 31.44	0	1230875..1231755	-	293	89256599	isftu1	FTL_1290	-	transposase
1152	 35.53	0	1231849..1232166	+	105	89256600	-	FTL_1291	-	hypothetical protein
1153	 35.28	0	1232299..1232967	+	222	89256601	-	FTL_1292	-	hypothetical protein
1154	 31.00	0	1233021..1233491	+	156	89256602	-	FTL_1293	-	hypothetical protein
1155	 32.48	0	1233628..1234452	+	274	89256603	-	FTL_1294	-	Short-chain dehydrogenase/reductase
1156	 30.77	0	1234474..1235253	-	259	89256604	-	FTL_1295	-	amino acid transporter
1157	 34.73	0	1235301..1235801	-	166	89256605	-	FTL_1296	-	amino acid antiporter
1158	 30.81	0	1236059..1236931	-	290	89256606	-	FTL_1297	-	hypothetical protein
1159	 31.56	0	1237099..1237979	+	293	89256607	isftu1	FTL_1298	-	transposase
1160	 32.22	0	1238007..1238456	-	149	89256608	-	FTL_1299	-	hypothetical protein
1161	 33.92	0	1238465..1238806	-	113	89256609	-	FTL_1300	-	hypothetical protein
1162	 29.58	0	1239087..1239725	+	212	89256610	isftu2	FTL_1301	-	transposase
1163	 33.33	0	1239801..1240532	+	243	89256611	-	FTL_1302	-	phenol hydroxylase
1164	 36.07	+1	1240654..1240872	+	72	161353780	rpmE	FTL_1303	-	50S ribosomal protein L31
1165	 32.93	0	1241081..1242586	-	501	89256613	-	FTL_1304	-	glutamate--cysteine ligase
1166	 30.09	0	1242639..1244180	-	513	89256614	-	FTL_1305	-	virulence factor MviN
1167	 34.56	0	1244203..1245264	-	353	89256615	-	FTL_1306	-	hypothetical protein
1168	 34.13	0	1245347..1245724	-	125	89256616	-	FTL_1307	-	nucleotide-binding protein, yjeE
1169	 31.73	0	1245735..1246916	-	393	89256617	-	FTL_1308	-	FolC bifunctional protein
1170	 37.10	+1	1246931..1247833	-	300	89256618	-	FTL_1309	-	Acetyl-CoA carboxylase beta subunit
1171	 36.17	+1	1247875..1248297	-	140	89256619	-	FTL_1310	-	nucleoside diphosphate kinase
1172	 37.42	+1	1248370..1250010	-	546	89256620	-	FTL_1311	-	CTP synthetase
1173	 31.58	0	1250323..1251177	+	284	89256621	-	FTL_1312	-	S-transferase
1174	 35.37	0	1251093..1251827	+	244	89256622	-	FTL_1313	-	short-chain fatty acids transporter
1175	 27.50	-1	1252110..1253018	-	302	89256623	-	FTL_1314	-	hypothetical protein
1176	 24.37	-2	1253064..1253498	-	144	89256624	-	FTL_1315	-	hypothetical protein
1177	 31.67	0	1253489..1254369	+	293	89256625	isftu1	FTL_1316	-	transposase
1178	 25.80	-1	1254565..1255560	-	331	89256626	-	FTL_1317	-	hypothetical protein
1179	 30.81	0	1255917..1256432	+	171	89256627	-	FTL_1319	-	transposase
1180	 30.54	0	1256815..1257387	-	190	89256628	-	FTL_1320	-	hypothetical protein
1181	 29.25	0	1257374..1257667	-	97	89256629	-	FTL_1321	-	hypothetical protein
1182	 29.98	0	1261927..1262403	-	158	89256630	-	FTL_1326	-	hypothetical protein
1183	 27.83	-1	1262508..1263689	-	393	89256631	-	FTL_1327	-	hypothetical protein
1184	 38.00	+1	1264352..1265530	-	392	89256632	-	FTL_1328	-	outer membrane associated protein
1185	 33.74	0	1265640..1265885	-	81	89256633	-	FTL_1329	-	ferredoxin
1186	 32.52	0	1265890..1266378	-	162	89256634	-	FTL_1330	-	phosphopantetheine adenylyltransferase
1187	 34.06	0	1266390..1266941	-	183	89256635	-	FTL_1331	-	hypothetical protein
1188	 33.33	0	1266955..1267311	-	118	89256636	-	FTL_1332	-	hesB family protein
1189	 34.48	0	1267332..1268555	-	407	89256637	-	FTL_1333	-	selenocysteine lyase
1190	 36.03	+1	1268658..1270031	-	457	89256638	-	FTL_1334	-	L-serine dehydratase 1
1191	 27.06	-1	1270087..1270755	-	222	89256639	-	FTL_1335	-	hypothetical protein
1192	 31.20	0	1270781..1271623	-	280	89256640	-	FTL_1336	-	prephenate dehydratase
1193	 32.33	0	1273399..1274496	-	365	89256641	-	FTL_1338	-	alanine racemase
1194	 31.44	0	1274601..1275971	-	456	89256642	-	FTL_1339	-	proton-dependent oligopeptide transport (POT) family protein
1195	 31.21	0	1276096..1276803	-	235	89256643	-	FTL_1340	-	hypothetical protein
1196	 29.82	0	1276815..1277213	-	132	89256644	-	FTL_1341	-	hypothetical protein
1197	 32.06	0	1277293..1278315	+	340	89256645	-	FTL_1342	-	hypothetical protein
1198	 33.33	0	1278304..1278609	-	101	89256646	-	FTL_1343	-	hypothetical protein
1199	 28.45	-1	1278606..1278953	-	115	89256647	-	FTL_1344	-	hypothetical protein
1200	 32.75	0	1281238..1281408	-	56	89256648	-	FTL_1347	-	hypothetical protein
1201	 29.64	0	1281701..1282513	+	270	89256649	-	FTL_1348	-	transposase
32.49	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.