IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
964	 37.06	+1	1029467..1030513	+	348	89256412	ruvB	FTL_1077	-	Holliday junction DNA helicase B
965	 25.49	-2	1031796..1031999	-	67	89256413	-	FTL_1079	-	helix-turn-helix family protein
966	 26.98	-1	1032172..1032549	-	125	89256414	-	FTL_1080	-	hypothetical protein
967	 25.24	-2	1032902..1033321	+	139	89256415	-	FTL_1081	-	hypothetical protein
968	 28.23	-1	1033290..1033622	+	110	89256416	-	FTL_1082	-	hypothetical protein
969	 28.87	-1	1033607..1033897	-	96	89256417	-	FTL_1083	-	hypothetical protein
970	 24.77	-2	1034256..1034582	-	108	89256418	-	FTL_1084	-	hypothetical protein
971	 27.31	-1	1034661..1034876	-	71	89256419	-	FTL_1085	-	hypothetical protein
972	 29.65	0	1035243..1035866	+	207	89256420	-	FTL_1086	-	proton-dependent oligopeptide transporter (POT) family protein
973	 29.19	0	1035817..1036443	-	208	89256421	isftu2	FTL_1087	-	transposase
974	 39.27	+1	1036686..1037039	-	117	89256422	-	FTL_1088	-	hypothetical protein
975	 31.22	0	1037417..1038172	-	251	89256423	-	FTL_1089	-	choloylglycine hydrolase family protein
976	 34.79	0	1038266..1039018	-	250	89256424	-	FTL_1090	-	rRNA methyltransferase
977	 32.98	0	1041501..1042355	+	284	89256425	-	FTL_1093	-	bifunctional methionine sulfoxide reductase B/A protein
978	 36.10	+1	1043815..1044936	-	373	89256426	-	FTL_1096	-	lipoprotein
979	 33.33	0	1044957..1045247	-	96	89256427	-	FTL_1097	-	macrophage infectivity potentiator, fragment
980	 28.19	-1	1046424..1046831	-	135	89256428	-	FTL_1100	-	hypothetical protein
981	 26.49	-1	1046862..1047197	+	111	89256429	-	FTL_1101	-	hypothetical protein
982	 34.23	0	1049106..1049552	-	148	89256430	-	FTL_1105	-	hypothetical protein
983	 34.53	0	1049708..1052305	+	865	89256431	-	FTL_1106	-	alanyl-tRNA synthetase
984	 32.97	0	1052322..1053695	+	457	89256432	-	FTL_1107	-	hypothetical protein
985	 34.64	0	1053698..1055077	+	459	89256433	-	FTL_1108	-	cytosol aminopeptidase family protein
986	 32.09	0	1055211..1056176	+	321	161353781	-	FTL_1109	-	transaldolase B
987	 30.94	0	1056202..1056660	+	152	89256435	-	FTL_1110	-	hypothetical protein
988	 26.92	-1	1056872..1057183	-	103	89256436	-	FTL_1111	-	isochorismatase hydrolase family protein
989	 29.31	0	1057410..1058180	+	256	89256437	isftu2	FTL_1112	-	transposase
990	 26.99	-1	1058231..1058908	-	225	89256438	-	FTL_1113	-	hypothetical protein
991	 25.05	-2	1058905..1059411	-	168	89256439	-	FTL_1114	-	isochorismatase hydrolase family protein
992	 31.06	0	1060034..1060780	+	248	89256440	-	FTL_1115	-	hypothetical protein
993	 31.45	0	1060774..1062789	+	671	89256441	-	FTL_1116	-	ATP-dependent DNA helicase
994	 31.53	0	1062845..1063675	+	276	89256442	-	FTL_1117	-	hypothetical protein
995	 33.84	0	1063806..1064792	-	328	89256443	-	FTL_1118	-	hypothetical protein
996	 29.73	0	1064986..1065846	+	286	89256444	rdgC	FTL_1119	-	recombination associated protein
997	 30.23	0	1065851..1066108	+	85	89256445	-	FTL_1120	-	hypothetical protein
998	 32.09	0	1066772..1067575	+	267	89256446	-	FTL_1121	-	hypothetical protein
999	 23.37	-2	1067575..1068126	+	183	89256447	-	FTL_1122	-	hypothetical protein
1000	 38.21	+1	1068466..1069368	+	300	89256448	-	FTL_1123	-	hypothetical protein
1001	 34.63	0	1069405..1069866	+	153	89256449	-	FTL_1124	-	hypothetical protein
1002	 30.63	0	1069990..1071246	-	418	89256450	-	FTL_1125	-	transcription regulator
1003	 35.09	0	1071249..1071476	-	75	89256451	-	FTL_1126	-	transcriptional regulator
1004	 31.56	0	1072264..1073144	-	293	89256452	isftu1	FTL_1127	-	transposase
1005	 28.89	-1	1073135..1073404	+	89	89256453	-	FTL_1128	-	hypothetical protein
1006	 27.85	-1	1073497..1073988	+	163	89256454	-	FTL_1129	-	acetyltransferase
1007	 30.79	0	1073966..1074358	-	130	89256455	-	FTL_1130	-	ribosomal RNA small subunit methyltransferase
1008	 29.77	0	1074770..1075246	-	158	89256456	-	FTL_1131	-	Sun protein
1009	 31.56	0	1075246..1076034	-	262	89256457	-	FTL_1132	-	inositol-1-monophosphatase
1010	 36.85	+1	1076121..1077173	-	350	89256458	-	FTL_1133	-	hypothetical protein
1011	 31.51	0	1077263..1078471	-	402	89256459	-	FTL_1134	-	hypothetical protein
1012	 32.63	0	1079269..1079553	-	94	89256460	-	FTL_1136	-	hypothetical protein
1013	 38.25	+1	1079634..1080893	-	419	89256461	-	FTL_1137	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1014	 32.98	0	1080973..1081257	-	94	89256462	-	FTL_1138	-	acyl carrier protein
1015	 36.42	+1	1081354..1082097	-	247	89256463	-	FTL_1139	-	3-oxoacyl-(acyl-carrier-protein) reductase
1016	 35.29	0	1082111..1083031	-	306	89256464	-	FTL_1140	-	malonyl CoA-acyl carrier protein transacylase
1017	 35.80	0	1083079..1084050	-	323	89256465	-	FTL_1141	-	3-oxoacyl-[acyl carrier protein] synthase III
1018	 33.33	0	1084147..1085193	-	348	89256466	-	FTL_1142	-	putative glycerol-3-phosphate acyltransferase PlsX
1019	 33.33	0	1085292..1085474	-	60	89256467	rpmF	FTL_1143	-	50S ribosomal protein L32
1020	 27.98	-1	1085518..1086021	-	167	89256468	-	FTL_1144	-	hypothetical protein
1021	 37.15	+1	1086160..1088151	+	663	89256469	-	FTL_1145	-	transketolase
1022	 38.02	+1	1088189..1089190	+	333	89256470	-	FTL_1146	-	glyceraldehyde-3-phosphate dehydrogenase
1023	 36.56	+1	1089209..1090387	+	392	89256471	-	FTL_1147	-	phosphogylcerate kinase
1024	 37.16	+1	1090403..1091839	+	478	89256472	-	FTL_1148	-	pyruvate kinase
1025	 39.06	+1	1091858..1092922	+	354	89256473	-	FTL_1149	-	fructose-1,6-bisphosphate aldolase
1026	 29.37	0	1093090..1093644	-	184	89256474	-	FTL_1150	-	Alpha,alpha-trehalase.
1027	 29.42	0	1093524..1094570	-	348	89256475	-	FTL_1151	-	trehalase, pseuodgene
1028	 31.44	0	1094950..1095830	+	293	89256476	isftu1	FTL_1153	-	transposase
1029	 30.10	0	1096796..1097197	+	133	89256477	-	FTL_1155	-	hypothetical protein
1030	 29.90	0	1097207..1097410	+	67	89256478	-	FTL_1156	-	hypothetical protein
1031	 32.25	0	1097491..1098045	+	184	89256479	-	FTL_1157	-	intracellular growth locus, subunit A
1032	 31.03	0	1098059..1099579	+	506	89256480	-	FTL_1158	-	intracellular growth locus, subunit B
1033	 34.60	0	1099596..1100225	+	209	89256481	-	FTL_1159	-	intracellular growth locus, subunit C
1034	 29.24	0	1100246..1101442	+	398	89256482	-	FTL_1160	-	intracellular growth locus, subunit D
1035	 24.48	-2	1101449..1102024	-	191	89256483	-	FTL_1161	-	hypothetical protein
1036	 26.39	-1	1102042..1106028	-	1328	89256484	-	FTL_1162	-	hypothetical protein
1037	 23.51	-2	1106068..1106841	-	257	89256485	-	FTL_1163	-	hypothetical protein
1038	 26.13	-1	1106807..1107958	-	383	89256486	-	FTL_1164	-	hypothetical protein
1039	 27.88	-1	1107980..1108603	-	207	89256487	-	FTL_1165	-	hypothetical protein
1040	 26.14	-1	1108616..1110046	-	476	89256488	-	FTL_1166	-	hypothetical protein
1041	 33.14	0	1110059..1110580	-	173	89256489	-	FTL_1167	-	hypothetical protein
1042	 23.84	-2	1110648..1112312	-	554	89256490	-	FTL_1168	-	hypothetical protein
1043	 30.10	0	1112317..1112811	-	164	89256491	-	FTL_1169	-	hypothetical protein
1044	 23.81	-2	1112824..1113201	-	125	89256492	-	FTL_1170	-	hypothetical protein
1045	 25.99	-1	1113191..1116472	-	1093	89256493	-	FTL_1171	-	hypothetical protein
1046	 27.00	-1	1116477..1118939	-	820	89256494	-	FTL_1172	-	hypothetical protein
1047	 31.58	0	1124519..1125088	-	189	89256495	-	FTL_1173	-	hypothetical protein
1048	 31.06	0	1125350..1126273	-	307	89256496	-	FTL_1174	-	cystathionine beta-synthase (cystein synthase)
1049	 28.92	-1	1127680..1128132	+	150	89256497	-	FTL_1176	-	LysR transcriptional regulator family protein
1050	 31.86	0	1128805..1130157	-	450	89256498	trmE	FTL_1177	-	tRNA modification GTPase TrmE
1051	 21.54	-2	1130163..1130408	-	81	89256499	-	FTL_1178	-	hypothetical protein
1052	 32.66	0	1130527..1130823	+	98	89256500	-	FTL_1179	-	sigma-54 modulation protein
1053	 27.63	-1	1130860..1131315	+	151	89256501	-	FTL_1180	-	PEP-dependent sugar phosphotransferase system (PTS) family protein
1054	 35.22	0	1131308..1132051	+	247	89256502	-	FTL_1181	-	SpoU rRNA methylase family protein
1055	 31.74	0	1132053..1132616	+	187	89256503	-	FTL_1182	-	ribonuclease HII
1056	 28.93	-1	1132609..1133880	+	423	89256504	-	FTL_1183	-	Sodium-solute symporter family protein
1057	 31.86	0	1133877..1134284	-	135	89256505	-	FTL_1184	-	ClpXP protease specificity-enhancing factor
1058	 29.82	0	1134286..1134855	-	189	89256506	-	FTL_1185	-	macrophage growth locus, subunit A
1059	 38.46	+1	1134963..1135352	-	129	89256507	rpsI	FTL_1186	-	30S ribosomal protein S9
1060	 35.66	0	1135368..1135796	-	142	89256508	rplM	FTL_1187	-	50S ribosomal protein L13
1061	 30.13	0	1135935..1137119	-	394	89256509	-	FTL_1188	-	hypothetical protein
1062	 32.55	0	1137112..1138263	-	383	89256510	-	FTL_1189	-	membrane-bound lytic murein transglycosylase A (MLT) family protein
1063	 33.16	0	1138367..1138954	+	195	89256511	-	FTL_1190	-	heat shock protein GrpE
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.