IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.71   STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
901	 27.83	-1	968400..969053	+	217	167627126	-	Fphi_0902	-	4'-phosphopantetheinyl transferase family protein
902	 36.61	+1	969060..970400	+	446	167627127	-	Fphi_0903	-	glutamate decarboxylase
903	 36.75	+1	970493..971983	+	496	167627128	-	Fphi_0904	-	amidophosphoribosyltransferase
904	 39.75	+2	972382..975855	+	1157	167627129	-	Fphi_0905	-	phosphoribosylformylglycinamidine synthase
905	 30.26	0	976223..977167	+	314	167627130	-	Fphi_0906	-	integrase, catalytic region
906	 32.54	0	977151..977528	+	125	167627131	-	Fphi_0907	-	hypothetical protein
907	 35.19	0	977892..978752	+	286	167627132	-	Fphi_0908	-	galactose mutarotase
908	 32.43	0	978803..979579	-	258	167627133	-	Fphi_0909	-	hypothetical protein
909	 29.40	-1	979586..980221	-	211	167627134	-	Fphi_0910	-	hypothetical protein
910	 34.72	0	980518..981816	+	432	167627135	-	Fphi_0911	-	adenylosuccinate lyase
911	 30.46	0	981961..983526	+	521	167627136	-	Fphi_0912	-	putative ABC type bacteriocin/antibiotic exporter
912	 37.06	+1	983538..984611	+	357	167627137	-	Fphi_0913	-	membrane fusion protein
913	 32.62	0	984694..984975	+	93	167627138	-	Fphi_0914	-	Glu-tRNAGln amidotransferase C subunit
914	 36.51	+1	984984..986429	+	481	167627139	-	Fphi_0915	-	glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
915	 36.38	+1	986444..987853	+	469	167627140	-	Fphi_0916	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
916	 29.17	-1	987868..988275	+	135	167627141	-	Fphi_0917	-	hypothetical protein
917	 32.38	0	988286..989755	-	489	167627142	-	Fphi_0918	-	GDSL-like lipolytic enzyme
918	 35.53	0	989813..991315	-	500	167627143	-	Fphi_0919	-	hypothetical protein
919	 32.10	0	991413..992624	-	403	167627144	-	Fphi_0920	-	putative transmembrane transport protein
920	 32.82	0	992621..993010	-	129	167627145	-	Fphi_0921	-	hypothetical protein
921	 32.30	0	993007..995328	-	773	167627146	-	Fphi_0922	-	IucA/IucC
922	 32.19	0	995348..996664	-	438	167627147	-	Fphi_0923	-	L-lysine 6-monooxygenase (NADPH)
923	 31.23	0	996661..998370	-	569	167627148	-	Fphi_0924	-	IucA/IucC
924	 31.02	0	998367..999878	-	503	167627149	-	Fphi_0925	-	diaminobutyrate decarboxylase
925	 35.96	+1	999875..1001209	-	444	167627150	-	Fphi_0926	-	diaminobutyrate--2-oxoglutarate transaminase
926	 33.33	0	1001291..1002622	+	443	167627151	-	Fphi_0927	-	aspartate kinase
927	 32.62	0	1002626..1003045	-	139	167627152	-	Fphi_0928	-	ferric uptake regulation protein
928	 37.09	+1	1003271..1003669	+	132	167627153	-	Fphi_0929	-	NADH dehydrogenase I, A subunit
929	 42.56	+2	1003660..1004136	+	158	167627154	-	Fphi_0930	-	NADH dehydrogenase subunit B
930	 35.80	0	1004139..1004786	+	215	167627155	-	Fphi_0931	-	NADH dehydrogenase
931	 38.60	+1	1004805..1006058	+	417	167627156	-	Fphi_0932	-	NADH dehydrogenase subunit D
932	 36.20	+1	1006068..1006556	+	162	167627157	-	Fphi_0933	-	NADH dehydrogenase I, E subunit
933	 40.47	+2	1006563..1007837	+	424	167627158	-	Fphi_0934	-	NADH dehydrogenase (quinone)
934	 35.70	0	1007855..1010221	+	788	167627159	-	Fphi_0935	-	NADH dehydrogenase subunit G
935	 37.39	+1	1010223..1011233	+	336	167627160	-	Fphi_0936	-	NADH dehydrogenase (quinone)
936	 34.15	0	1011247..1011735	+	162	167627161	-	Fphi_0937	-	NADH dehydrogenase subunit I
937	 34.82	0	1011740..1012345	+	201	167627162	-	Fphi_0938	-	NADH dehydrogenase I, J subunit
938	 32.08	0	1012338..1012655	+	105	167627163	-	Fphi_0939	-	NADH dehydrogenase I, K subunit
939	 35.27	0	1012665..1014674	+	669	167627164	-	Fphi_0940	-	NADH dehydrogenase (quinone)
940	 36.54	+1	1014695..1016284	+	529	167627165	-	Fphi_0941	-	NADH dehydrogenase (quinone)
941	 34.50	0	1016300..1017751	+	483	167627166	-	Fphi_0942	-	NADH dehydrogenase (quinone)
942	 26.67	-1	1017827..1018021	+	64	167627167	-	Fphi_0943	-	hypothetical protein
943	 37.24	+1	1018023..1019531	+	502	167627168	-	Fphi_0944	-	magnesium chelatase
944	 35.85	0	1019566..1020600	+	344	167627169	-	Fphi_0945	-	uroporphyrinogen decarboxylase
945	 37.53	+1	1020814..1021266	+	150	167627170	-	Fphi_0946	-	hypothetical protein
946	 35.99	+1	1021282..1022751	+	489	167627171	-	Fphi_0947	-	transcription elongation factor NusA
947	 36.88	+1	1022787..1025321	+	844	167627172	-	Fphi_0948	-	translation initiation factor IF-2
948	 31.48	0	1025324..1025755	+	143	167627173	-	Fphi_0949	-	ribosome-binding factor A
949	 33.80	0	1025763..1027037	+	424	167627174	-	Fphi_0950	-	histidyl-tRNA synthetase
950	 34.41	0	1027034..1028332	+	432	167627175	-	Fphi_0951	-	major facilitator transporter
951	 30.62	0	1028332..1029399	+	355	167627176	-	Fphi_0952	-	hypothetical protein
952	 34.73	0	1029392..1030321	+	309	167627177	-	Fphi_0953	-	lysozyme
953	 35.86	0	1030329..1031633	-	434	167627178	-	Fphi_0954	-	major facilitator transporter
954	 30.11	0	1031774..1032145	+	123	167627179	-	Fphi_0955	-	hypothetical protein
955	 36.87	+1	1032200..1032991	+	263	167627180	-	Fphi_0956	-	F0F1 ATP synthase subunit A
956	 41.83	+2	1033040..1033345	+	101	167627181	-	Fphi_0957	-	F0F1 ATP synthase subunit C
957	 39.28	+2	1033391..1033861	+	156	167627182	-	Fphi_0958	-	F0F1 ATP synthase subunit B
958	 31.81	0	1033884..1034408	+	174	167627183	-	Fphi_0959	-	F0F1 ATP synthase subunit delta
959	 37.61	+1	1034427..1035968	+	513	167627184	-	Fphi_0960	-	F0F1 ATP synthase subunit alpha
960	 35.01	0	1035983..1036879	+	298	167627185	-	Fphi_0961	-	F0F1 ATP synthase subunit gamma
961	 38.20	+1	1036889..1038265	+	458	167627186	-	Fphi_0962	-	F0F1 ATP synthase subunit beta
962	 39.50	+2	1038278..1038715	+	145	167627187	-	Fphi_0963	-	F0F1 ATP synthase subunit epsilon
963	 33.86	0	1038861..1041713	+	950	167627188	-	Fphi_0964	-	hypothetical protein
964	 38.18	+1	1041731..1042060	-	109	167627189	-	Fphi_0965	-	glutaredoxin-related protein
965	 33.68	0	1042196..1042774	+	192	167627190	-	Fphi_0966	-	superoxide dismutase
966	 33.11	0	1042990..1044363	-	457	167627191	-	Fphi_0967	-	peptide-acetyl-coenzyme A transporter (PAT) family protein
967	 37.14	+1	1044452..1045711	-	419	167627192	-	Fphi_0968	-	citrate (Si)-synthase
968	 34.65	0	1046058..1046438	+	126	167627193	-	Fphi_0969	-	succinate dehydrogenase, cytochrome b556
969	 34.46	0	1046429..1046782	+	117	167627194	-	Fphi_0970	-	succinate dehydrogenase hydrophobic membrane anchor protein
970	 40.25	+2	1046795..1048588	+	597	167627195	-	Fphi_0971	-	succinate dehydrogenase
971	 35.75	0	1048605..1049306	+	233	167627196	-	Fphi_0972	-	succinate dehydrogenase iron-sulfur subunit
972	 35.79	0	1049336..1052140	+	934	167627197	-	Fphi_0973	-	alpha-ketoglutarate decarboxylase
973	 37.30	+1	1052168..1053628	+	486	167627198	-	Fphi_0974	-	2-oxoglutarate dehydrogenase complex, E2 component, dihydrolipoyltranssuccinase
974	 35.98	+1	1053666..1054193	+	175	167627199	-	Fphi_0975	-	adenine phosphoribosyltransferase
975	 34.45	0	1054197..1055534	+	445	167627200	-	Fphi_0976	-	phosphoglucosamine mutase
976	 33.86	0	1055537..1056298	+	253	167627201	-	Fphi_0977	-	Triose-phosphate isomerase
977	 34.81	0	1056286..1056624	+	112	167627202	-	Fphi_0978	-	preprotein translocase subunit SecG
978	 30.26	0	1057072..1058016	+	314	167627203	-	Fphi_0979	-	integrase, catalytic region
979	 26.75	-1	1058187..1058687	+	166	167627204	-	Fphi_0980	-	hypothetical protein
980	 35.56	0	1058921..1059100	+	59	167627205	-	Fphi_1927	-	AlpA family regulatory protein
981	 28.57	-1	1059104..1060027	+	307	167627206	-	Fphi_0981	-	hypothetical protein
982	 29.99	0	1060027..1061493	+	488	167627207	-	Fphi_0982	-	hypothetical protein
983	 29.70	0	1061726..1062028	+	100	167627208	-	Fphi_0983	-	hypothetical protein
984	 29.89	0	1062383..1062847	-	154	167627209	-	Fphi_0984	-	integrase, catalytic region
985	 29.97	0	1063032..1063328	-	98	167627210	-	Fphi_0985	-	putative transposase
986	 32.41	0	1063701..1064135	+	144	167627211	-	Fphi_0986	-	phage terminase, small subunit
987	 30.04	0	1064359..1064631	+	90	167627212	-	Fphi_0988	-	LysR family transcriptional regulator
988	 30.26	0	1064603..1065547	-	314	167627213	-	Fphi_0987	-	integrase, catalytic region
989	 27.23	-1	1065754..1066359	+	201	167627214	-	Fphi_0989	-	LysR family transcriptional regulator
990	 29.56	0	1066500..1067453	+	317	167627215	-	Fphi_0990	-	LysR family transcriptional regulator
991	 31.78	0	1067530..1067979	+	149	167627216	-	Fphi_0992	-	hypothetical protein
992	 33.77	0	1067976..1069118	-	380	167627217	-	Fphi_0991	-	coproporphyrinogen dehydrogenase
993	 29.10	-1	1069120..1069497	-	125	167627218	-	Fphi_0993	-	GtrA-like protein
994	 34.13	0	1069568..1070446	+	292	167627219	-	Fphi_0994	-	hypothetical protein
995	 37.25	+1	1070551..1073355	+	934	167627220	-	Fphi_0995	-	aconitate hydratase
996	 37.03	+1	1073446..1074474	+	342	167627221	-	Fphi_0996	-	type IV pili nucleotide-binding protein
997	 33.62	0	1074629..1075675	-	348	167627222	-	Fphi_0997	-	NAD/FAD-dependent oxidoreductase
998	 27.29	-1	1075633..1076079	-	148	167627223	-	Fphi_0998	-	hypothetical protein
999	 33.44	0	1076090..1077049	-	319	167627224	-	Fphi_0999	-	cytochrome bd-II terminal oxidase subunit II
1000	 37.04	+1	1077052..1078428	-	458	167627225	-	Fphi_1000	-	cytochrome bd-II terminal oxidase subunit I
32.71	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.