IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.71   STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
812	 36.72	+1	864336..865427	+	363	167627037	-	Fphi_0814	-	hydrogenase expression/formation protein HypD
813	 38.21	+1	865429..866454	+	341	167627038	-	Fphi_0815	-	hydrogenase expression/formation protein HypE
814	 37.78	+1	866465..867565	+	366	167627039	-	Fphi_0816	-	cytochrome c3 hydrogenase alpha (or beta) chain
815	 37.79	+1	867568..868419	+	283	167627040	-	Fphi_0817	-	hydrogenase/sulfur reductase gamma subunit
816	 37.67	+1	868422..869228	+	268	167627041	-	Fphi_0818	-	hypothetical protein
817	 38.66	+1	869231..870526	+	431	167627042	-	Fphi_0819	-	hypothetical protein
818	 30.32	0	870649..871578	+	309	167627043	-	Fphi_0820	-	high-affinity nickel-transporter
819	 32.69	0	871642..872106	+	154	167627044	-	Fphi_0821	-	hypothetical protein
820	 33.08	0	872116..872505	-	129	167627045	-	Fphi_0822	-	hypothetical protein
821	 38.21	+1	872593..874272	-	559	167627046	-	Fphi_0823	-	putative ABC transporter ATP-binding protein
822	 30.63	0	874485..875705	+	406	167627047	-	Fphi_0824	-	metabolite:H+ symporter (MHS) family protein
823	 26.29	-1	875721..875933	-	70	167627048	-	Fphi_0825	-	hypothetical protein
824	 33.49	0	876081..877367	+	428	167627049	-	Fphi_0826	-	sulfide-quinone reductase
825	 31.13	0	877348..878301	+	317	167627050	-	Fphi_0827	-	hypothetical protein
826	 35.12	0	878310..879314	-	334	167627051	-	Fphi_0828	-	drug/metabolite transporter (DMT) superfamily protein
827	 34.31	0	879331..880251	-	306	167627052	-	Fphi_0829	-	ribokinase
828	 25.61	-2	880789..881565	+	258	167627053	-	Fphi_0830	-	hypothetical protein
829	 28.74	-1	881883..882143	+	86	167627054	-	Fphi_0831	-	hypothetical protein
830	 32.92	0	882146..882385	+	79	167627055	-	Fphi_1915	-	hypothetical protein
831	 31.32	0	882622..884859	+	745	167627056	-	Fphi_0832	-	hypothetical protein
832	 33.41	0	884895..887471	-	858	167627057	-	Fphi_0833	-	aminopeptidase N
833	 31.50	0	887595..888956	-	453	167627058	-	Fphi_0834	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
834	 33.09	0	889049..889462	-	137	167627059	-	Fphi_0835	-	hypothetical protein
835	 28.90	-1	889467..890165	-	232	167627060	-	Fphi_0836	-	peptide methionine sulfoxide reductase
836	 31.45	0	890230..891237	-	335	167627061	-	Fphi_0837	-	anthranilate phosphoribosyltransferase
837	 31.78	0	891234..891812	-	192	167627062	-	Fphi_0838	-	anthranilate synthase component II
838	 30.16	0	891816..893360	-	514	167627063	-	Fphi_0839	-	anthranilate synthase component I
839	 23.61	-2	893361..893648	-	95	167627064	-	Fphi_0840	-	putative Trp operon repressor
840	 27.32	-1	894103..895632	-	509	167627065	-	Fphi_0841	-	ribonuclease G
841	 31.03	0	896082..897557	+	491	167627066	-	Fphi_0842	-	chromosomal replication initiator protein DnaA
842	 26.99	-1	897595..898698	+	367	167627067	-	Fphi_0843	-	DNA-directed DNA polymerase
843	 23.85	-2	898700..899848	-	382	167627068	-	Fphi_0844	-	hypothetical protein
844	 30.59	0	900006..901535	+	509	167627069	-	Fphi_0845	-	aspartate/glutamate transporter
845	 30.26	0	901945..902889	-	314	167627070	-	Fphi_0846	-	integrase, catalytic region
846	 28.15	-1	902983..903561	-	192	167627071	-	Fphi_0847	-	hypothetical protein
847	 37.57	+1	903610..904317	-	235	167627072	-	Fphi_0848	-	hydrogenase accessory protein HypB
848	 33.92	0	904328..904666	-	112	167627073	-	Fphi_0849	-	hydrogenase nickel insertion protein HypA
849	 34.05	0	904803..906065	-	420	167627074	-	Fphi_0850	-	metabolite:H+ symporter (MHS) family protein
850	 39.34	+2	906245..907027	-	260	167627075	-	Fphi_0851	-	fkbp-type peptidyl-prolyl cis-trans isomerase family protein
851	 30.26	0	907166..908110	+	314	167627076	-	Fphi_0852	-	integrase, catalytic region
852	 34.30	0	908157..908672	-	171	167627077	-	Fphi_0853	-	B-type cytochrome
853	 31.07	0	908733..909218	-	161	167627078	-	Fphi_0854	-	Rieske (2Fe-2S) domain-containing protein
854	 30.26	0	909345..910289	+	314	167627079	-	Fphi_0856	-	integrase, catalytic region
855	 34.68	0	910233..910679	-	148	167627080	-	Fphi_0855	-	Rieske (2Fe-2S) domain-containing protein
856	 33.42	0	910770..911918	+	382	167627081	-	Fphi_0857	-	Na+:H+ antiporter
857	 29.17	-1	911982..912701	+	239	167627082	-	Fphi_0858	-	hypothetical protein
858	 33.20	0	912710..913450	-	246	167627083	-	Fphi_0859	-	acyltransferase
859	 33.07	0	913466..914218	-	250	167627084	-	Fphi_0860	-	acyltransferase
860	 37.35	+1	914379..914702	-	107	167627085	-	Fphi_0861	-	4Fe-4S ferredoxin
861	 32.57	0	914906..915562	+	218	167627086	-	Fphi_0862	-	hypothetical protein
862	 37.13	+1	915606..916763	-	385	167627087	-	Fphi_0863	-	phosphoribosylglycinamide formyltransferase 2
863	 36.08	+1	916850..919072	-	740	167627088	-	Fphi_0864	-	chitinase
864	 35.74	0	919223..921802	-	859	167627089	-	Fphi_0865	-	chaperone ClpB
865	 29.99	0	922017..922733	+	238	167627090	-	Fphi_0867	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
866	 35.93	0	922730..923539	-	269	167627091	-	Fphi_0866	-	tryptophan synthase subunit alpha
867	 38.12	+1	923542..924732	-	396	167627092	-	Fphi_0868	-	tryptophan synthase subunit beta
868	 31.41	0	924819..926324	-	501	167627093	-	Fphi_0869	-	carboxypeptidase Taq
869	 36.99	+1	926260..927654	-	464	167627094	-	Fphi_0870	-	chloride channel protein
870	 35.28	0	927756..928115	-	119	167627095	-	Fphi_0871	-	hypothetical protein
871	 34.31	0	928149..928559	-	136	167627096	-	Fphi_0872	-	hypothetical protein
872	 33.84	0	928577..928969	-	130	167627097	-	Fphi_0873	-	hypothetical protein
873	 31.90	0	929159..929716	+	185	167627098	-	Fphi_0874	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
874	 33.07	0	929717..930463	+	248	167627099	-	Fphi_0875	-	Mg-dependent DNase
875	 37.81	+1	930539..931477	+	312	167627100	-	Fphi_0876	-	prolyl aminopeptidase
876	 33.85	0	931921..933276	+	451	167627101	-	Fphi_0877	-	aspartate kinase
877	 33.78	0	933288..933959	+	223	167627102	-	Fphi_0878	-	dihydrodipicolinate reductase
878	 36.49	+1	933950..934837	+	295	167627103	-	Fphi_0879	-	dihydrodipicolinate synthase
879	 38.93	+1	934862..935611	+	249	167627104	-	Fphi_0880	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
880	 32.01	0	935616..936827	+	403	167627105	-	Fphi_0881	-	pyridoxal-dependent decarboxylase
881	 31.99	0	936846..938036	+	396	167627106	-	Fphi_0882	-	aspartate aminotransferase
882	 33.41	0	943420..944814	+	464	167627107	-	Fphi_0883	-	sugar phosphate antiporter
883	 29.42	-1	944815..945402	-	195	167627108	-	Fphi_0884	-	acyl carrier protein phosphodiesterase
884	 34.44	0	945693..947411	+	572	167627109	-	Fphi_0885	-	potassium-transporting ATPase subunit A
885	 36.67	+1	947424..949463	+	679	167627110	-	Fphi_0886	-	potassium-transporting ATPase B chain
886	 32.47	0	949480..950055	+	191	167627111	-	Fphi_0887	-	potassium-transporting ATPase
887	 32.92	0	950108..952798	+	896	167627112	-	Fphi_0888	-	two component sensor protein KdpD
888	 34.21	0	952816..953502	+	228	167627113	-	Fphi_0890	-	response regulator receiver protein
889	 30.87	0	953499..953945	-	148	167627114	-	Fphi_0889	-	hypothetical protein
890	 31.24	0	954075..955268	+	397	167627115	-	Fphi_0891	-	tyrosine permease
891	 37.61	+1	955344..956348	+	334	167627116	-	Fphi_0892	-	GTPase ObgE
892	 33.49	0	956356..958230	+	624	167627117	-	Fphi_0893	-	amino acid-polyamine-organocation (APC) superfamily protein
893	 31.42	0	958234..959904	+	556	167627118	-	Fphi_0895	-	ATP-binding cassette (ABC) superfamily protein
894	 36.20	+1	959894..961321	-	475	167627119	-	Fphi_0894	-	Na+:H+ antiporter
895	 35.02	0	961495..962679	+	394	167627120	-	Fphi_0896	-	drug:H+ antiporter-1 (DHA1) family protein
896	 36.30	+1	963134..963808	+	224	167627121	-	Fphi_0897	-	hypothetical protein
897	 37.35	+1	963859..965178	-	439	167627122	-	Fphi_0898	-	U32 family peptidase
898	 30.77	0	965583..965816	+	77	167627123	-	Fphi_0899	-	hypothetical protein
899	 33.33	0	966235..966855	+	206	167627124	-	Fphi_0900	-	protein-L-isoaspartate O-methyltransferase
900	 37.31	+1	966907..968391	+	494	167627125	-	Fphi_0901	-	outer membrane efflux protein, TolC precursor
901	 27.83	-1	968400..969053	+	217	167627126	-	Fphi_0902	-	4'-phosphopantetheinyl transferase family protein
902	 36.61	+1	969060..970400	+	446	167627127	-	Fphi_0903	-	glutamate decarboxylase
903	 36.75	+1	970493..971983	+	496	167627128	-	Fphi_0904	-	amidophosphoribosyltransferase
904	 39.75	+2	972382..975855	+	1157	167627129	-	Fphi_0905	-	phosphoribosylformylglycinamidine synthase
905	 30.26	0	976223..977167	+	314	167627130	-	Fphi_0906	-	integrase, catalytic region
906	 32.54	0	977151..977528	+	125	167627131	-	Fphi_0907	-	hypothetical protein
907	 35.19	0	977892..978752	+	286	167627132	-	Fphi_0908	-	galactose mutarotase
908	 32.43	0	978803..979579	-	258	167627133	-	Fphi_0909	-	hypothetical protein
909	 29.40	-1	979586..980221	-	211	167627134	-	Fphi_0910	-	hypothetical protein
910	 34.72	0	980518..981816	+	432	167627135	-	Fphi_0911	-	adenylosuccinate lyase
911	 30.46	0	981961..983526	+	521	167627136	-	Fphi_0912	-	putative ABC type bacteriocin/antibiotic exporter
32.71	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.