IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
35	 33.24	0	35944..36975	-	343	167626260	-	Fphi_0039	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
36	 33.10	0	37173..38447	+	424	167626261	-	Fphi_0040	-	sodium-dicarboxylate symporter family protein
37	 32.54	0	38471..39862	-	463	167626262	-	Fphi_0041	-	hypothetical protein
38	 31.39	0	39972..40589	+	205	167626263	-	Fphi_0042	-	hypothetical protein
39	 38.60	+1	40677..40847	+	56	167626264	-	Fphi_0043	-	rubredoxin
40	 32.99	0	40856..41728	+	290	167626265	-	Fphi_0044	-	hypothetical protein
41	 27.92	-1	41733..42323	-	196	167626266	-	Fphi_0045	-	hypothetical protein
42	 30.37	0	42529..43473	+	314	167626267	-	Fphi_0047	-	integrase, catalytic region
43	 30.57	0	43470..44336	-	288	167626268	-	Fphi_0046	-	hypothetical protein
44	 36.47	+1	44619..46436	+	605	167626269	-	Fphi_0048	-	GTP binding translational elongation factor Tu and G family protein
45	 35.30	0	46508..47320	+	270	167626270	-	Fphi_0049	-	short chain dehydrogenase/reductase family oxidoreductase
46	 36.03	+1	47346..49091	-	581	167626271	-	Fphi_0050	-	gamma-glutamyltransferase
47	 35.40	0	49212..50129	-	305	167626272	-	Fphi_0051	-	VacJ like lipoprotein
48	 28.93	-1	50208..51410	-	400	167626273	-	Fphi_0052	-	lipoprotein
49	 28.16	-1	51403..51963	-	186	167626274	-	Fphi_0053	-	transposase
50	 33.99	0	51956..52261	-	101	167626275	-	Fphi_0054	-	hypothetical protein
51	 31.94	0	52261..52692	-	143	167626276	-	Fphi_0055	-	oligoketide cyclase/lipid transport protein
52	 39.45	+2	52767..53240	+	157	167626277	-	Fphi_0056	-	SsrA-binding protein
53	 31.00	0	53242..54012	+	256	167626278	-	Fphi_0057	-	hypothetical protein
54	 30.26	0	54433..55377	+	314	167626279	-	Fphi_0058	-	integrase, catalytic region
55	 30.72	0	55382..55534	-	50	167626280	-	Fphi_0059	-	hypothetical protein
56	 36.38	+1	55549..56205	-	218	167626281	-	Fphi_0060	-	hypothetical protein
57	 30.26	0	56240..57184	-	314	167626282	-	Fphi_0061	-	integrase, catalytic region
58	 30.13	0	57293..57916	-	207	167626283	-	Fphi_0062	-	phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase
59	 35.01	0	57925..58698	-	257	167626284	-	Fphi_0063	-	imidazole glycerol phosphate synthase subunit HisF
60	 34.30	0	58692..59417	-	241	167626285	-	Fphi_0064	-	1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase
61	 31.32	0	59418..60014	-	198	167626286	-	Fphi_0065	-	imidazole glycerol phosphate synthase subunit HisH
62	 33.43	0	60011..61087	-	358	167626287	-	Fphi_0066	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
63	 30.20	0	61074..62159	-	361	167626288	-	Fphi_0067	-	histidinol-phosphate aminotransferase
64	 34.95	0	62164..63462	-	432	167626289	-	Fphi_0068	-	histidinol dehydrogenase
65	 31.74	0	63472..64473	-	333	167626290	-	Fphi_0069	-	ATP phosphoribosyltransferase
66	 33.49	0	64790..66061	-	423	167626291	-	Fphi_0070	-	metabolite:H+ symporter (MHS) family protein
67	 29.10	-1	66093..67226	+	377	167626292	-	Fphi_0071	-	hypothetical protein
68	 29.33	-1	67301..68374	+	357	167626293	-	Fphi_0073	-	hypothetical protein
69	 31.37	0	68371..68574	-	67	167626294	-	Fphi_0072	-	hypothetical protein
70	 31.17	0	68558..69943	-	461	167626295	-	Fphi_0074	-	exodeoxyribonuclease VII large subunit
71	 31.22	0	70044..71273	-	409	167626296	-	Fphi_0075	-	hypothetical protein
72	 34.44	0	71388..72563	+	391	167626297	-	Fphi_0076	-	hippurate hydrolase
73	 31.84	0	72560..73096	+	178	167626298	-	Fphi_0077	-	hypothetical protein
74	 32.53	0	73103..74854	-	583	167626299	-	Fphi_0078	-	transglutaminase-like superfamily protein
75	 31.10	0	74877..75860	-	327	167626300	-	Fphi_0079	-	hypothetical protein
76	 34.85	0	75864..77312	-	482	167626301	-	Fphi_0080	-	hypothetical protein
77	 26.77	-1	77493..78710	-	405	167626302	-	Fphi_0081	-	hypothetical protein
78	 26.70	-1	78747..79937	-	396	167626303	-	Fphi_0082	-	hypothetical protein
79	 29.07	-1	80040..81281	-	413	167626304	-	Fphi_0083	-	major facilitator transporter
80	 33.41	0	81294..82571	-	425	167626305	-	Fphi_0084	-	metabolite:H+ symporter (MHS) family protein
81	 30.26	0	82743..83687	+	314	167626306	-	Fphi_0085	-	integrase, catalytic region
82	 30.82	0	83708..84463	-	251	167626307	-	Fphi_0086	-	UBA/ThiF-type NAD/FAD binding fold
83	 31.00	0	84464..85921	-	485	167626308	-	Fphi_0087	-	thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase
84	 35.13	0	85933..86712	-	259	167626309	-	Fphi_0088	-	ThiG protein thiamine biosynthesis
85	 26.87	-1	86716..86916	-	66	167626310	-	Fphi_1923	-	hypothetical protein
86	 32.00	0	86919..87971	-	350	167626311	-	Fphi_0089	-	thiamine biosynthesis protein ThiO
87	 34.12	0	87964..89742	-	592	167626312	-	Fphi_0090	-	thiamin biosynthesis protein
88	 32.71	0	89995..90792	-	265	167626313	-	Fphi_0091	-	glutamate racemase
89	 29.70	0	90792..91589	-	265	167626314	-	Fphi_0092	-	membrane protein of unknown function
90	 35.18	0	91623..93629	-	668	167626315	-	Fphi_0093	-	excinuclease ABC subunit B
91	 31.61	0	93630..95078	-	482	167626316	-	Fphi_0094	-	exodeoxyribonuclease I
92	 34.30	0	95228..95950	-	240	167626317	-	Fphi_0095	-	oxidoreductase, short-chain dehydrogenase family protein
93	 31.24	0	96066..96974	+	302	167626318	-	Fphi_0096	-	LysR family transcriptional regulator
94	 27.85	-1	96976..97869	-	297	167626319	-	Fphi_0097	-	hypothetical protein
95	 27.87	-1	97856..98935	-	359	167626320	-	Fphi_0098	-	hypothetical protein
96	 36.46	+1	99079..100962	+	627	167626321	-	Fphi_0099	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
97	 34.36	0	100975..101364	+	129	167626322	-	Fphi_0100	-	lipoprotein
98	 27.57	-1	101384..102754	+	456	167626323	-	Fphi_0101	-	hypothetical protein
99	 31.11	0	102756..103430	+	224	167626324	-	Fphi_0102	-	ribose-5-phosphate isomerase A
100	 30.79	0	103439..104302	-	287	167626325	-	Fphi_0103	-	pirin-related protein
101	 29.87	0	104341..105378	-	345	167626326	-	Fphi_0104	-	threonine aldolase
102	 30.97	0	105567..106370	+	267	167626327	-	Fphi_0105	-	hypothetical protein
103	 28.91	-1	106388..107020	-	210	167626328	-	Fphi_0106	-	hypothetical protein
104	 38.10	+1	107128..107484	-	118	167626329	-	Fphi_0107	-	50S ribosomal protein L20
105	 36.87	+1	107520..107717	-	65	167626330	-	Fphi_0108	-	50S ribosomal protein L35
106	 41.03	+2	107762..108229	-	155	167626331	-	Fphi_0109	-	translation initiation factor IF-3
107	 34.54	0	108308..110215	-	635	167626332	-	Fphi_0110	-	threonyl-tRNA synthetase
108	 33.84	0	110658..112445	+	595	167626333	-	Fphi_0111	-	chitin-binding protein
109	 23.23	-2	112657..112953	-	98	167626334	-	Fphi_0112	-	hypothetical protein
110	 28.61	-1	112943..113323	-	126	167626335	-	Fphi_0113	-	glycine cleavage system protein H
111	 32.80	0	113429..114544	+	371	167626336	-	Fphi_0114	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
112	 36.01	+1	114555..114890	+	111	167626337	-	Fphi_0115	-	hypothetical protein
113	 31.02	0	114890..115495	+	201	167626338	-	Fphi_0116	-	recombination protein RecR
114	 33.50	0	116287..118065	+	592	167626339	-	Fphi_0117	-	type IV pili ATPase
115	 32.52	0	118076..119308	+	410	167626340	-	Fphi_0118	-	type IV pili polytopic inner membrane protein
116	 30.26	0	119722..120666	+	314	167626341	-	Fphi_0119	-	integrase, catalytic region
117	 36.74	+1	121025..122197	-	390	167626342	-	Fphi_0120	-	outer membrane associated protein
118	 32.52	0	122297..122542	-	81	167626343	-	Fphi_0121	-	4Fe-4S ferredoxin
119	 31.90	0	122544..123032	-	162	167626344	-	Fphi_0122	-	pantetheine-phosphate adenylyltransferase
120	 36.23	+1	123040..123591	-	183	167626345	-	Fphi_0123	-	hypothetical protein
121	 31.64	0	123603..123956	-	117	167626346	-	Fphi_0124	-	hypothetical protein
122	 32.52	0	123984..125207	-	407	167626347	-	Fphi_0125	-	SufS subfamily cysteine desulfurase
123	 34.35	0	125315..126688	-	457	167626348	-	Fphi_0126	-	L-serine ammonia-lyase
124	 26.91	-1	126741..127409	-	222	167626349	-	Fphi_0127	-	hypothetical protein
125	 32.95	0	127413..128990	-	525	167626350	-	Fphi_0128	-	2', 3'-cyclic nucleotide 2'-phosphodiesterase
126	 30.96	0	128990..129832	-	280	167626351	-	Fphi_0129	-	prephenate dehydratase
127	 34.76	0	129901..131511	-	536	167626352	-	Fphi_0130	-	amino acid-polyamine-organocation (APC) superfamily protein
128	 33.24	0	131591..132688	-	365	167626353	-	Fphi_0131	-	alanine racemase
129	 31.12	0	132701..134194	-	497	167626354	-	Fphi_0132	-	alkaline phosphatase
130	 32.91	0	134316..135026	-	236	167626355	-	Fphi_0133	-	hypothetical protein
131	 28.71	-1	135023..135433	-	136	167626356	-	Fphi_0134	-	hypothetical protein
132	 31.05	0	135443..136537	+	364	167626357	-	Fphi_0136	-	hypothetical protein
133	 29.65	0	136523..137173	-	216	167626358	-	Fphi_0135	-	HAD-superfamily hydrolase
134	 29.74	0	137180..137986	-	268	167626359	-	Fphi_0137	-	lignostilbene-alpha beta-dioxygenase-like protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.