IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.71   STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
631	 32.92	0	670454..672610	-	718	167626856	-	Fphi_0636	-	primosomal protein N'
632	 30.72	0	672610..673182	-	190	167626857	-	Fphi_0637	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
633	 30.16	0	673202..674398	-	398	167626858	-	Fphi_0638	-	tRNA processing ribonuclease BN
634	 37.39	+1	674411..675001	+	196	167626859	-	Fphi_0639	-	trp repressor binding protein
635	 37.04	+1	675013..675471	+	152	167626860	-	Fphi_0640	-	outer membrane protein
636	 33.99	0	675610..676833	+	407	167626861	-	Fphi_0641	-	major facilitator transporter
637	 34.09	0	676905..677825	+	306	167626862	-	Fphi_0642	-	manganese/zinc/iron chelate uptake transporter family protein
638	 32.74	0	677827..678504	+	225	167626863	-	Fphi_0643	-	ABC transporter, ATP-binding protein
639	 34.38	0	678425..679288	+	287	167626864	-	Fphi_0644	-	permease of ABC transporter
640	 35.86	0	679345..680097	+	250	167626865	-	Fphi_0645	-	dienelactone hydrolase family protein
641	 33.52	0	680475..681017	-	180	167626866	-	Fphi_0646	-	hypoxanthine phosphoribosyltransferase
642	 35.04	0	681020..682306	-	428	167626867	-	Fphi_0647	-	adenylosuccinate synthetase
643	 38.50	+1	682484..684031	+	515	167626868	-	Fphi_0648	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
644	 32.55	0	684099..685367	-	422	167626869	-	Fphi_0649	-	serine permease
645	 32.97	0	685472..686017	-	181	167626870	-	Fphi_0650	-	outer membrane lipoprotein
646	 30.57	0	686075..687052	+	325	167626871	-	Fphi_0651	-	DNA polymerase III, delta subunit
647	 38.63	+1	687165..688202	+	345	167626872	-	Fphi_0652	-	glutamate--ammonia ligase
648	 34.76	0	688276..689820	+	514	167626873	-	Fphi_0653	-	glutaminase
649	 32.23	0	689963..690505	+	180	167626874	-	Fphi_0654	-	hypothetical protein
650	 24.07	-2	690561..690884	-	107	167626875	-	Fphi_1926	-	hypothetical protein
651	 34.94	0	690901..692583	-	560	167626876	-	Fphi_0655	-	lysyl-tRNA synthetase
652	 25.26	-2	692659..692943	-	94	167626877	-	Fphi_0656	-	endonuclease
653	 38.33	+1	692998..694038	-	346	167626878	-	Fphi_0657	-	peptide chain release factor 2
654	 34.36	0	694246..695901	+	551	167626879	-	Fphi_0659	-	DNA-directed DNA polymerase
655	 33.68	0	695898..696755	-	285	167626880	-	Fphi_0658	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
656	 39.15	+2	696977..698110	-	377	167626881	-	Fphi_0660	-	cell division protein FtsZ
657	 36.66	+1	698151..699413	-	420	167626882	-	Fphi_0661	-	cell division protein FtsA
658	 28.22	-1	699515..700198	-	227	167626883	-	Fphi_0662	-	cell division protein FtsQ
659	 37.47	+1	700192..701085	-	297	167626884	-	Fphi_0663	-	D-alanine--D-alanine ligase
660	 36.36	+1	701092..701520	-	142	167626885	-	Fphi_0664	-	zinc-binding protein
661	 35.88	0	701687..703372	+	561	167626886	-	Fphi_0665	-	30S ribosomal protein S1
662	 32.78	0	703496..704038	+	180	167626887	-	Fphi_0666	-	putative SUA5/YciO/YrdC family protein
663	 31.10	0	704132..704668	+	178	167626888	-	Fphi_0667	-	membrane protein of unknown function
664	 30.20	0	704894..705787	-	297	167626889	-	Fphi_0668	-	1-acylglycerol-3-phosphate acyltransferase
665	 27.76	-1	705880..707046	-	388	167626890	-	Fphi_0669	-	competence protein
666	 30.16	0	707049..707993	-	314	167626891	-	Fphi_0670	-	integrase, catalytic region
667	 31.07	0	708061..708942	-	293	167626892	-	Fphi_0671	-	competence-related protein
668	 30.48	0	709097..710566	+	489	167626893	-	Fphi_0672	-	glutathione synthase/ribosomal protein S6 modification enzyme
669	 25.46	-2	710553..710984	+	143	167626894	-	Fphi_0673	-	acetyltransferase GNAT family protein
670	 36.41	+1	711416..713140	+	574	167626895	-	Fphi_0674	-	ABC-type anion transport system, duplicated permease component
671	 34.23	0	713169..713951	+	260	167626896	-	Fphi_0676	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
672	 29.47	-1	713945..714514	-	189	167626897	-	Fphi_0675	-	YggT family protein
673	 35.74	0	714528..715442	-	304	167626898	-	Fphi_0677	-	hypothetical protein
674	 30.68	0	715724..716551	-	275	167626899	-	Fphi_0678	-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
675	 30.94	0	716539..717207	-	222	167626900	-	Fphi_0679	-	lipoprotein releasing system, subunit B, outer membrane lipoprotein
676	 35.37	0	717134..717673	-	179	167626901	-	Fphi_0680	-	carbonic anhydrase
677	 33.12	0	717676..719550	-	624	167626902	-	Fphi_0681	-	monovalent cation:proton antiporter
678	 28.99	-1	719732..720421	+	229	167626903	-	Fphi_1913	-	hypothetical protein
679	 29.43	-1	720408..721226	-	272	167626904	-	Fphi_0682	-	hypothetical protein
680	 32.37	0	721232..721957	-	241	167626905	-	Fphi_0683	-	short chain dehydrogenase
681	 34.26	0	722071..723579	-	502	167626906	-	Fphi_0684	-	membrane protein of unknown function
682	 35.91	0	723691..725010	-	439	167626907	-	Fphi_0685	-	ABC transporter, ATP-binding protein
683	 35.05	0	725031..726836	-	601	167626908	-	Fphi_0686	-	ABC-type anion transport system, duplicated permease component
684	 29.17	-1	726965..727132	+	55	167626909	-	Fphi_0687	-	hypothetical protein
685	 40.19	+2	727133..727774	-	213	167626910	-	Fphi_0688	-	hypothetical protein
686	 31.67	0	728234..728653	-	139	167626911	-	Fphi_0689	-	hypothetical protein
687	 34.86	0	728650..729042	-	130	167626912	-	Fphi_0690	-	CrcB family protein
688	 36.32	+1	729043..729945	-	300	167626913	-	Fphi_0691	-	hydroxymethylbilane synthase
689	 33.48	0	729942..730610	-	222	167626914	-	Fphi_0692	-	carboxylesterase
690	 33.33	0	730942..732816	-	624	167626915	-	Fphi_0693	-	ribonuclease II family protein
691	 31.08	0	732874..733671	+	265	167626916	-	Fphi_0694	-	glycosyl transferase
692	 35.48	0	733751..735520	-	589	167626917	-	Fphi_0695	-	aspartyl-tRNA synthetase
693	 34.98	0	735751..737271	+	506	167626918	-	Fphi_0696	-	nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
694	 30.21	0	737359..738639	-	426	167626919	-	Fphi_0697	-	major facilitator transporter
695	 38.94	+1	738682..739752	-	356	167626920	-	Fphi_0698	-	betaine-homocysteine methyltransferase
696	 36.61	+1	740057..741490	-	477	167626921	-	Fphi_0699	-	succinate semialdehyde dehydrogenase (NAD(P)+ dependent)
697	 34.86	0	741506..743602	-	698	167626922	-	Fphi_0700	-	phosphate acetyltransferase
698	 34.20	0	743612..744766	-	384	167626923	-	Fphi_0701	-	propionate kinase 2 / acetate kinase A
699	 35.99	+1	744867..745355	-	162	167626924	-	Fphi_0702	-	single-strand DNA binding protein
700	 32.59	0	745435..745971	-	178	167626925	-	Fphi_0703	-	regulatory protein RecX
701	 38.32	+1	745877..746959	-	360	167626926	-	Fphi_0704	-	calcium-transporting ATPase
702	 36.67	+1	746984..747433	-	149	167626927	-	Fphi_0705	-	preprotein translocase subunit SecB
703	 34.52	0	747466..747888	-	140	167626928	-	Fphi_0706	-	rhodanese-related sulfurtransferase
704	 37.41	+1	748035..748574	-	179	167626929	-	Fphi_0707	-	outer membrane protein of unknown function
705	 36.59	+1	748666..749310	-	214	167626930	-	Fphi_0708	-	S49 family serine peptidase
706	 30.19	0	749486..750409	-	307	167626931	-	Fphi_0709	-	integrase, catalytic region
707	 33.61	0	750723..751079	+	118	167626932	-	Fphi_0710	-	ferredoxin
708	 35.39	0	751240..752937	+	565	167626933	-	Fphi_0711	-	indolepyruvate decarboxylase
709	 33.57	0	752953..754203	-	416	167626934	-	Fphi_0712	-	Na+/H+ antiporter
710	 34.83	0	754733..755803	+	356	167626935	-	Fphi_0713	-	pyrimidine reductase/pyrimidine deaminase
711	 33.33	0	755796..756401	+	201	167626936	-	Fphi_0714	-	riboflavin synthase subunit alpha
712	 35.97	+1	756394..757605	+	403	167626937	-	Fphi_0715	-	GTP cyclohydrolase II
713	 35.59	0	757609..758052	+	147	167626938	-	Fphi_0716	-	riboflavin synthase
714	 31.21	0	758056..758574	+	172	167626939	-	Fphi_0717	-	peptide deformylase
715	 33.65	0	758671..759615	+	314	167626940	-	Fphi_0718	-	hypothetical protein
716	 37.22	+1	759644..760723	-	359	167626941	-	Fphi_0719	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
717	 37.48	+1	760837..762621	-	594	167626942	-	Fphi_0720	-	GTP-binding protein LepA
718	 37.36	+1	762890..763162	+	90	167626943	-	Fphi_0721	-	30S ribosomal protein S20
719	 28.53	-1	763250..763603	+	117	167626944	-	Fphi_0722	-	hypothetical protein
720	 28.93	-1	763605..764921	-	438	167626945	-	Fphi_0723	-	hypothetical protein
721	 32.23	0	764949..765311	-	120	167626946	-	Fphi_0724	-	outer membrane lipoprotein
722	 35.85	0	765316..765912	-	198	167626947	-	Fphi_0725	-	phosphoheptose isomerase
723	 31.25	0	766094..768394	+	766	167626948	-	Fphi_0726	-	hypothetical protein
724	 30.99	0	768458..769609	-	383	167626949	-	Fphi_0727	-	drug:H+ antiporter-1 (DHA1) family protein
725	 29.57	0	769707..770609	+	300	167626950	-	Fphi_0728	-	LysR family transcriptional regulator
726	 30.67	0	770684..771697	+	337	167626951	-	Fphi_0730	-	hypothetical protein
727	 31.39	0	771694..772362	-	222	167626952	-	Fphi_0729	-	hypothetical protein
728	 34.47	0	772362..772976	-	204	167626953	-	Fphi_0731	-	methyltransferase GidB
729	 34.16	0	773075..774280	+	401	167626954	-	Fphi_0733	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
730	 35.69	0	774277..774954	-	225	167626955	-	Fphi_0732	-	hypothetical protein
32.71	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.