IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
463	 35.73	0	517937..518770	-	277	167626688	-	Fphi_0469	-	group A colicin translocation; TolA protein
464	 36.28	+1	518757..519197	-	146	167626689	-	Fphi_0470	-	group A colicin translocation; TolR protein
465	 35.73	0	519214..519921	-	235	167626690	-	Fphi_0471	-	group A colicin translocation; TolQ protein
466	 39.11	+1	520076..520300	+	74	167626691	-	Fphi_0472	-	hypothetical protein
467	 33.09	0	520310..521131	-	273	167626692	-	Fphi_0473	-	CDP-alcohol phosphatidyltransferase
468	 35.54	0	521145..521507	-	120	167626693	-	Fphi_0474	-	chorismate mutase
469	 36.05	+1	521519..522475	-	318	167626694	-	Fphi_0475	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
470	 33.33	0	522456..522920	-	154	167626695	-	Fphi_0476	-	FKBP-type peptidyl-prolyl cis-trans isomerase
471	 32.46	0	523102..524358	+	418	167626696	-	Fphi_0477	-	OmpA family protein
472	 30.26	0	524584..525528	+	314	167626697	-	Fphi_0478	-	integrase, catalytic region
473	 33.10	0	525639..526505	+	288	167626698	-	Fphi_0479	-	DNA processing protein DprA
474	 34.62	0	526579..528294	+	571	167626699	-	Fphi_0480	-	aspartate:alanine exchanger (AAE) family protein
475	 33.02	0	528307..529887	+	526	167626700	-	Fphi_0481	-	aspartate aminotransferase
476	 33.33	0	529959..531134	+	391	167626701	-	Fphi_0482	-	xanthine/uracil permease family/inorganic anion transporter, sulfate permease (SulP) family protein
477	 33.63	0	531303..531638	+	111	167626702	-	Fphi_0483	-	hypothetical protein
478	 30.79	0	531662..532015	-	117	167626703	-	Fphi_0484	-	arsenate reductase
479	 33.01	0	532034..532660	-	208	167626704	-	Fphi_0485	-	multiple antibiotic resistance (MarC)-related protein
480	 31.19	0	532741..533346	-	201	167626705	-	Fphi_0486	-	MutT/NUDIX family protein
481	 28.57	-1	533405..533845	+	146	167626706	-	Fphi_0487	-	glyoxalase family protein
482	 28.11	-1	533886..534134	-	82	167626707	-	Fphi_0488	-	hypothetical protein
483	 39.34	+2	534363..535877	-	504	167626708	-	Fphi_0489	-	fumarate hydratase, class I
484	 35.69	0	536202..538241	-	679	167626709	-	Fphi_0490	-	ATP-dependent DNA helicase
485	 37.31	+1	538374..538700	+	108	167626710	-	Fphi_0491	-	hypothetical protein
486	 31.65	0	538837..539073	+	78	167626711	-	Fphi_0492	-	50S ribosomal protein L28
487	 27.56	-1	539105..539260	+	51	167626712	-	Fphi_0493	-	50S ribosomal protein L33
488	 34.64	0	539292..539978	+	228	167626713	-	Fphi_0494	-	septum formation inhibitor
489	 35.77	0	540006..540827	+	273	167626714	-	Fphi_0495	-	septum formation inhibitor-activating ATPase
490	 31.14	0	540833..541105	+	90	167626715	-	Fphi_0496	-	cell division topological specificity factor protein
491	 32.58	0	541121..541915	+	264	167626716	-	Fphi_0497	-	ABC transporter, ATP-binding protein
492	 33.73	0	541918..542682	+	254	167626717	-	Fphi_0498	-	ABC-type transport system permease protein
493	 35.59	0	542682..543212	+	176	167626718	-	Fphi_0499	-	hypothetical protein
494	 33.18	0	543289..543954	+	221	167626719	-	Fphi_0500	-	hypothetical protein
495	 25.85	-2	543951..544244	+	97	167626720	-	Fphi_0501	-	hypothetical protein
496	 29.96	0	544262..544498	+	78	167626721	-	Fphi_0502	-	BolA family protein
497	 37.51	+1	544684..545784	-	366	167626722	-	Fphi_0503	-	VacJ like lipoprotein
498	 30.32	0	545931..546626	+	231	167626723	-	Fphi_0504	-	3-demethylubiquinone-9 3-methyltransferase
499	 27.28	-1	546630..547373	+	247	167626724	-	Fphi_0505	-	hypothetical protein
500	 35.26	0	547761..549263	+	500	167626725	-	Fphi_0506	-	amino acid-polyamine-organocation family protein
501	 28.37	-1	549367..550071	+	234	167626726	-	Fphi_0507	-	hypothetical protein
502	 25.35	-2	550100..550387	+	95	167626727	-	Fphi_0508	-	hypothetical protein
503	 32.68	0	550389..551759	-	456	167626728	-	Fphi_0509	-	amino acid transporter
504	 28.98	-1	551769..552824	+	351	167626729	-	Fphi_0510	-	alanine racemase
505	 32.52	0	553181..554413	+	410	167626730	-	Fphi_0511	-	transposase mutator family protein
506	 39.43	+2	554467..556320	+	617	167626731	-	Fphi_0512	-	chitinase
507	 26.02	-2	556328..556819	-	163	167626732	-	Fphi_0513	-	acetyltransferase
508	 31.99	0	556831..558021	-	396	167626733	-	Fphi_0514	-	drug:H+ antiporter-1 (DHA1) family protein
509	 33.76	0	558078..559022	-	314	167626734	-	Fphi_0515	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
510	 33.99	0	559026..560405	-	459	167626735	-	Fphi_0516	-	cysteine--tRNA ligase
511	 35.63	0	560483..562570	-	695	167626736	-	Fphi_0517	-	hypothetical protein
512	 31.92	0	562580..563500	-	306	167626737	-	Fphi_0518	-	hypothetical protein
513	 35.95	+1	563514..564239	-	241	167626738	-	Fphi_0519	-	pilus assembly protein
514	 26.92	-1	564325..564948	-	207	167626739	-	Fphi_0520	-	pilus assembly protein
515	 29.21	-1	564958..566364	-	468	167626740	-	Fphi_0521	-	pilus assembly protein
516	 30.49	0	566361..567275	-	304	167626741	-	Fphi_0522	-	pilus assembly protein
517	 27.92	-1	567259..567609	-	116	167626742	-	Fphi_0523	-	hypothetical protein
518	 31.78	0	567697..568980	-	427	167626743	-	Fphi_0524	-	HlyC/CorC family transporter-associated protein
519	 30.71	0	568991..570670	-	559	167626744	-	Fphi_0525	-	glycosyl transferase, group 2
520	 35.86	0	570735..572201	-	488	167626745	-	Fphi_0526	-	proline:Na+ symporter
521	 40.12	+2	572377..573363	-	328	167626746	-	Fphi_0527	-	fructose 1,6-bisphosphatase II
522	 34.27	0	573384..574022	-	212	167626747	-	Fphi_0528	-	hypothetical protein
523	 35.81	0	574034..575488	-	484	167626748	-	Fphi_0529	-	lysine:H+ symporter
524	 34.54	0	575749..576411	-	220	167626749	-	Fphi_0530	-	phosphatidic acid phosphatase PAP2 superfamily protein
525	 36.90	+1	576533..578998	+	821	167626750	-	Fphi_0531	-	cell division protein
526	 27.51	-1	578999..579616	+	205	167626751	-	Fphi_0532	-	lipoprotein releasing system, subunit A
527	 30.68	0	579902..581218	-	438	167626752	-	Fphi_0533	-	membrane protein of unknown function
528	 32.84	0	581341..581541	-	66	167626753	-	Fphi_0534	-	hypothetical protein
529	 35.88	0	581658..583109	+	483	167626754	-	Fphi_0535	-	K+ transporter (trk) family protein
530	 30.02	0	583115..583597	-	160	167626755	-	Fphi_0536	-	putative lipoprotein
531	 33.33	0	583687..584385	-	232	167626756	-	Fphi_0537	-	activator of osmoprotectant transporter ProP
532	 35.13	0	584848..585738	-	296	167626757	-	Fphi_0538	-	hypothetical protein
533	 32.00	0	585763..586212	-	149	167626758	-	Fphi_0539	-	hypothetical protein
534	 32.83	0	586221..586616	-	131	167626759	-	Fphi_0540	-	hypothetical protein
535	 34.43	0	586803..587531	+	242	167626760	-	Fphi_0541	-	phenol 2-monooxygenase
536	 30.12	0	587618..587866	+	82	167626761	-	Fphi_0542	-	50S ribosomal protein L31
537	 31.81	0	587966..589471	-	501	167626762	-	Fphi_0543	-	glutamate--cysteine ligase
538	 29.71	0	589523..591067	-	514	167626763	-	Fphi_0544	-	multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter
539	 35.99	+1	591092..592294	-	400	167626764	-	Fphi_0545	-	hypothetical protein
540	 33.60	0	592377..592754	-	125	167626765	-	Fphi_0546	-	hypothetical protein
541	 33.00	0	592762..593946	-	394	167626766	-	Fphi_0547	-	dihydrofolate synthase
542	 37.76	+1	593961..594863	-	300	167626767	-	Fphi_0548	-	acetyl-CoA carboxylase, carboxytransferase subunit beta
543	 36.17	+1	594903..595325	-	140	167626768	-	Fphi_0549	-	nucleoside-diphosphate kinase
544	 36.26	+1	595398..597038	-	546	167626769	-	Fphi_0550	-	CTP synthetase
545	 34.39	0	597198..598709	+	503	167626770	-	Fphi_0551	-	hypothetical protein
546	 35.80	0	598816..600072	+	418	167626771	-	Fphi_0552	-	argininosuccinate synthase
547	 33.84	0	600077..601270	+	397	167626772	-	Fphi_0553	-	argininosuccinate lyase
548	 32.02	0	601382..601837	+	151	167626773	-	Fphi_0555	-	arginine repressor
549	 33.50	0	601826..603010	-	394	167626774	-	Fphi_0554	-	ornithine aminotransferase
550	 31.48	0	603155..604180	+	341	167626775	-	Fphi_0556	-	N-acetyl-gamma-glutamyl-phosphate reductase
551	 34.68	0	604195..605385	+	396	167626776	-	Fphi_0557	-	amino-acid N-acetyltransferase
552	 30.86	0	605382..606188	+	268	167626777	-	Fphi_0558	-	acetylglutamate kinase
553	 32.45	0	606185..607093	+	302	167626778	-	Fphi_0559	-	ornithine carbamoyltransferase
554	 32.75	0	607145..609031	-	628	167626779	-	Fphi_0560	-	heat shock protein 90
555	 26.73	-1	609147..609827	-	226	167626780	-	Fphi_0561	-	ion transport protein
556	 34.25	0	609940..610377	-	145	167626781	-	Fphi_0562	-	50S ribosomal protein L17
557	 31.29	0	610424..611401	-	325	167626782	-	Fphi_0563	-	DNA-directed RNA polymerase subunit alpha
558	 35.27	0	611458..612078	-	206	167626783	-	Fphi_0564	-	30S ribosomal protein S4
559	 36.67	+1	612100..612489	-	129	167626784	-	Fphi_0565	-	30S ribosomal protein S11
560	 37.82	+1	612526..612882	-	118	167626785	-	Fphi_0566	-	30S ribosomal protein S13
561	 34.54	0	613135..614460	-	441	167626786	-	Fphi_0567	-	preprotein translocase subunit SecY
562	 36.57	+1	614471..614902	-	143	167626787	-	Fphi_0568	-	50S ribosomal protein L15
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.