IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
369	 35.26	0	425561..427582	+	673	167626594	-	Fphi_0376	-	methionyl-tRNA synthetase
370	 32.76	0	427598..428809	+	403	167626595	-	Fphi_0377	-	major facilitator superfamily sugar transporter
371	 34.16	0	428815..429417	-	200	167626596	-	Fphi_0378	-	hypothetical protein
372	 31.54	0	429461..430075	-	204	167626597	-	Fphi_0379	-	SUA5/YciO/YrdC family protein
373	 28.25	-1	430135..430665	+	176	167626598	-	Fphi_0380	-	intracellular septation protein A family protein
374	 26.24	-2	430709..430990	+	93	167626599	-	Fphi_1924	-	hypothetical protein
375	 34.60	0	430993..432015	-	340	167626600	-	Fphi_0381	-	glucokinase
376	 34.93	0	432111..432863	+	250	167626601	-	Fphi_0382	-	ubiquinone/menaquinone biosynthesis methyltransferase
377	 28.91	-1	432865..433452	+	195	167626602	-	Fphi_0383	-	hypothetical protein
378	 36.59	+1	433445..435103	+	552	167626603	-	Fphi_0384	-	2-octaprenylphenol hydroxylase
379	 32.15	0	435104..435442	+	112	167626604	-	Fphi_0385	-	histidine triad (HIT) family protein
380	 30.89	0	435834..436487	-	217	167626605	-	Fphi_0386	-	purine/pyrimidine phosphoribosyl transferase family protein
381	 30.01	0	436494..437276	+	260	167626606	-	Fphi_0387	-	hypothetical protein
382	 30.76	0	437302..438195	-	297	167626607	-	Fphi_0388	-	hypothetical protein
383	 33.22	0	438273..439121	-	282	167626608	-	Fphi_0389	-	UDP-N-acetylmuramate dehydrogenase
384	 33.79	0	439129..440433	-	434	167626609	-	Fphi_0390	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
385	 35.55	0	440402..441799	-	465	167626610	-	Fphi_0391	-	GTP-binding protein EngA
386	 35.12	0	441881..443335	-	484	167626611	-	Fphi_0392	-	hypothetical protein
387	 39.28	+2	443348..445096	-	582	167626612	-	Fphi_0393	-	membrane protein of unknown function
388	 36.98	+1	445160..446971	-	603	167626613	-	Fphi_0394	-	malate dehydrogenase
389	 31.70	0	447122..448042	+	306	167626614	-	Fphi_0395	-	riboflavin kinase/FMN adenylyltransferase
390	 35.51	0	448135..450942	+	935	167626615	-	Fphi_0396	-	isoleucyl-tRNA synthetase
391	 32.79	0	450863..451411	+	182	167626616	-	Fphi_0398	-	lipoprotein signal peptidase II
392	 32.05	0	451406..451873	-	155	167626617	-	Fphi_0397	-	hypothetical protein
393	 34.46	0	452028..452648	+	206	167626618	-	Fphi_0399	-	ribosomal RNA large subunit methyltransferase J
394	 29.24	-1	452770..453966	+	398	167626619	-	Fphi_0401	-	major facilitator transporter
395	 29.43	-1	453963..454757	-	264	167626620	-	Fphi_0400	-	AraC family transcriptional regulator
396	 34.47	0	454808..455689	-	293	167626621	-	Fphi_0402	-	hypothetical protein
397	 32.34	0	455692..456399	-	235	167626622	-	Fphi_0403	-	glutamine amidotransferase, class I
398	 31.58	0	456411..457325	-	304	167626623	-	Fphi_0404	-	chromosome partition protein B
399	 35.70	0	457329..457961	-	210	167626624	-	Fphi_0405	-	chromosome partition protein A, ATPase
400	 34.07	0	458160..460457	+	765	167626625	-	Fphi_0406	-	DNA topoisomerase I
401	 31.27	0	460666..462021	-	451	167626626	-	Fphi_0407	-	hypothetical protein
402	 33.74	0	462167..462652	-	161	167626627	-	Fphi_0408	-	hypothetical protein
403	 32.56	0	462661..463176	-	171	167626628	-	Fphi_0409	-	hypothetical protein
404	 32.29	0	463274..463753	-	159	167626629	-	Fphi_0410	-	hypothetical protein
405	 37.87	+1	463877..464317	-	146	167626630	-	Fphi_0411	-	lipoprotein of unknown function
406	 30.38	0	464392..464763	-	123	167626631	-	Fphi_0412	-	hypothetical protein
407	 34.78	0	464853..466859	+	668	167626632	-	Fphi_0413	-	oligopeptidase A
408	 26.84	-1	466952..467305	+	117	167626633	-	Fphi_0415	-	hypothetical protein
409	 35.34	0	467302..468399	-	365	167626634	-	Fphi_0414	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
410	 40.04	+2	468401..468892	-	163	167626635	-	Fphi_0416	-	phosphoribosylaminoimidazole carboxylase
411	 34.72	0	469016..469591	-	191	167626636	-	Fphi_0417	-	phosphoribosylglycinamide formyltransferase
412	 35.89	0	469594..471903	-	769	167626637	-	Fphi_0418	-	phosphoribosylaminoimidazolesuccinocarboxamide synthase, phosphoribosylamine--glycine ligase
413	 35.82	0	471903..472946	-	347	167626638	-	Fphi_0419	-	phosphoribosylaminoimidazole synthetase
414	 38.28	+1	473061..473909	-	282	167626639	-	Fphi_0420	-	methenyltetrahydrofolate cyclohydrolase
415	 30.86	0	474040..474768	-	242	167626640	-	Fphi_0421	-	lipid A 1-phosphatase
416	 38.56	+1	475380..475838	+	152	167626641	-	Fphi_0422	-	type IV pili fiber building block protein
417	 34.02	0	476011..476448	+	145	167626642	-	Fphi_0423	-	type IV pili, pilus assembly protein
418	 33.50	0	476558..477787	+	409	167626643	-	Fphi_0424	-	type IV pili, pilus assembly protein
419	 35.82	0	478675..480324	-	549	167626644	-	Fphi_0425	-	DNA repair protein RecN
420	 35.94	+1	480560..481750	+	396	167626645	-	Fphi_0426	-	aspartate aminotransferase
421	 38.54	+1	481893..483005	-	370	167626646	-	Fphi_0427	-	Zn-dependent alcohol dehydrogenase
422	 33.61	0	483098..483460	-	120	167626647	-	Fphi_0428	-	mannose-6-phosphate isomerase
423	 35.63	0	483778..485172	+	464	167626648	-	Fphi_0430	-	amino acid transporter (AAT) family protein
424	 31.19	0	485147..485938	-	263	167626649	-	Fphi_0429	-	sterol desaturase
425	 39.05	+1	485942..486466	-	174	167626650	-	Fphi_0431	-	superoxide dismutase (Cu-Zn) precusor
426	 30.26	0	486688..487632	+	314	167626651	-	Fphi_0432	-	integrase, catalytic region
427	 32.53	0	487689..488189	+	166	167626652	-	Fphi_0433	-	methionine sulfoxide reductase B
428	 27.06	-1	488269..488874	+	201	167626653	-	Fphi_0434	-	hypothetical protein
429	 30.46	0	488978..489604	+	208	167626654	-	Fphi_0435	-	hypothetical protein
430	 36.16	+1	489715..490848	+	377	167626655	-	Fphi_0436	-	chorismate synthase
431	 31.01	0	490851..491453	+	200	167626656	-	Fphi_0437	-	hypothetical protein
432	 31.08	0	491450..492202	+	250	167626657	-	Fphi_0438	-	hypothetical protein
433	 35.30	0	492211..493581	+	456	167626658	-	Fphi_0439	-	DNA repair protein RadA
434	 29.63	0	493585..494124	+	179	167626659	-	Fphi_0441	-	hypothetical protein
435	 36.14	+1	494121..495119	-	332	167626660	-	Fphi_0440	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
436	 31.03	0	495433..496083	-	216	167626661	-	Fphi_0442	-	hypothetical protein
437	 31.42	0	496225..496590	+	121	167626662	-	Fphi_0443	-	ArsR family transcriptional regulator
438	 33.75	0	496587..498746	+	719	167626663	-	Fphi_0444	-	heavy metal cation transport ATPase
439	 33.71	0	498748..499803	-	351	167626664	-	Fphi_0445	-	hypothetical protein
440	 31.64	0	499939..500826	+	295	167626665	-	Fphi_0446	-	LysR family transcriptional regulator
441	 30.38	0	500908..501483	+	191	167626666	-	Fphi_0447	-	LemA-like protein
442	 33.52	0	501485..502555	+	356	167626667	-	Fphi_0448	-	heat shock protein HtpX
443	 34.08	0	502646..503587	+	313	167626668	-	Fphi_0449	-	type IV pili, pilus assembly protein
444	 29.32	-1	503708..504031	+	107	167626669	-	Fphi_0450	-	hypothetical protein
445	 36.44	+1	504066..504773	-	235	167626670	-	Fphi_0451	-	tRNA nucleotidyltransferase
446	 27.91	-1	504871..505386	+	171	167626671	-	Fphi_0452	-	chorismate lyase
447	 29.14	-1	505376..506233	+	285	167626672	-	Fphi_0453	-	prenyltransferase
448	 27.22	-1	506248..506607	+	119	167626673	-	Fphi_0454	-	hypothetical protein
449	 30.81	0	506625..507020	+	131	167626674	-	Fphi_0455	-	hypothetical protein
450	 30.92	0	507017..507430	+	137	167626675	-	Fphi_0456	-	hypothetical protein
451	 31.23	0	507567..508325	-	252	167626676	-	Fphi_0457	-	hypothetical protein
452	 29.49	0	508342..508965	-	207	167626677	-	Fphi_0458	-	hypothetical protein
453	 29.99	0	509014..509940	-	308	167626678	-	Fphi_0459	-	bile acid symporter family protein
454	 34.78	0	510071..510208	-	45	167626679	-	Fphi_0460	-	hypothetical protein
455	 35.49	0	510205..511734	-	509	167626680	-	Fphi_0461	-	deoxyribodipyrimidine photolyase-related protein
456	 35.40	0	511734..513233	-	499	167626681	-	Fphi_0462	-	deoxyribodipyrimidine photo-lyase
457	 31.17	0	513214..513444	-	76	167626682	-	Fphi_0463	-	hypothetical protein
458	 34.99	0	513468..514190	-	240	167626683	-	Fphi_0464	-	hypothetical protein
459	 35.61	0	514293..515612	-	439	167626684	-	Fphi_0465	-	2-alkenal reductase
460	 34.60	0	515714..516343	-	209	167626685	-	Fphi_0466	-	OmpA family peptidoglycan-associated lipoprotein
461	 34.55	0	516359..516604	-	81	167626686	-	Fphi_0467	-	hypothetical protein
462	 31.65	0	516614..517921	-	435	167626687	-	Fphi_0468	-	group A colicin translocation; TolB protein
463	 35.73	0	517937..518770	-	277	167626688	-	Fphi_0469	-	group A colicin translocation; TolA protein
464	 36.28	+1	518757..519197	-	146	167626689	-	Fphi_0470	-	group A colicin translocation; TolR protein
465	 35.73	0	519214..519921	-	235	167626690	-	Fphi_0471	-	group A colicin translocation; TolQ protein
466	 39.11	+1	520076..520300	+	74	167626691	-	Fphi_0472	-	hypothetical protein
467	 33.09	0	520310..521131	-	273	167626692	-	Fphi_0473	-	CDP-alcohol phosphatidyltransferase
468	 35.54	0	521145..521507	-	120	167626693	-	Fphi_0474	-	chorismate mutase
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.