IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
320	 35.41	0	355747..357669	+	640	167626545	-	Fphi_0328	-	glycogen branching enzyme
321	 33.74	0	357730..360942	+	1070	167626546	-	Fphi_0329	-	pullulonase, type I
322	 31.44	0	360952..361794	+	280	167626547	-	Fphi_0330	-	shikimate 5-dehydrogenase
323	 25.21	-2	361794..363122	+	442	167626548	-	Fphi_0331	-	hypothetical protein
324	 31.62	0	363135..364010	-	291	167626549	-	Fphi_0332	-	homoserine O-succinyltransferase
325	 36.38	+1	363982..365292	-	436	167626550	-	Fphi_0333	-	O-acetylhomoserine aminocarboxypropyltransferase
326	 31.85	0	365529..367007	-	492	167626551	-	Fphi_0334	-	GDSL-like lipolytic enzyme
327	 32.62	0	367074..367355	-	93	167626552	-	Fphi_1921	-	hypothetical protein
328	 36.42	+1	368036..370918	-	960	167626553	-	Fphi_0335	-	hypothetical protein
329	 30.61	0	370990..371760	-	256	167626554	-	Fphi_0336	-	hypothetical protein
330	 38.11	+1	371803..373248	-	481	167626555	-	Fphi_0337	-	glycine dehydrogenase subunit 2
331	 37.06	+1	373254..374621	-	455	167626556	-	Fphi_0338	-	glycine dehydrogenase subunit 1
332	 34.64	0	374688..375071	-	127	167626557	-	Fphi_0339	-	glycine cleavage system H protein (lipoate-binding)
333	 37.79	+1	375126..376202	-	358	167626558	-	Fphi_0340	-	glycine cleavage system aminomethyltransferase T
334	 33.47	0	376291..378426	-	711	167626559	-	Fphi_0341	-	lysine decarboxylase
335	 34.05	0	378522..379217	-	231	167626560	-	Fphi_0342	-	ABC transporter, ATPase component
336	 34.28	0	379210..380472	-	420	167626561	-	Fphi_0343	-	ABC transporter, involved in lipoprotein release, permease component
337	 31.85	0	381171..381776	-	201	167626562	-	Fphi_0344	-	peptide deformylase
338	 31.31	0	381797..383773	-	658	167626563	-	Fphi_0345	-	hypothetical protein
339	 28.80	-1	384078..385202	+	374	167626564	-	Fphi_0346	-	amino acid permease-like protein
340	 33.33	0	385337..385534	-	65	167626565	-	Fphi_0347	-	hypothetical protein
341	 28.87	-1	385578..385913	-	111	167626566	-	Fphi_0348	-	hypothetical protein
342	 36.09	+1	386134..389613	-	1159	167626567	-	Fphi_0349	-	DNA-directed DNA polymerase
343	 29.16	-1	389805..391889	+	694	167626568	-	Fphi_0350	-	small-conductance mechanosensitive channel-like protein
344	 31.70	0	391913..392584	+	223	167626569	-	Fphi_0351	-	hypothetical protein
345	 29.15	-1	392681..394762	+	693	167626570	-	Fphi_0352	-	small-conductance mechanosensitive channel-like protein
346	 31.93	0	394785..395993	-	402	167626571	-	Fphi_0353	-	hypothetical protein
347	 30.96	0	396030..398009	-	659	167626572	-	Fphi_0354	-	soluble lytic murein transglycosylase
348	 29.00	-1	398089..400074	-	661	167626573	-	Fphi_0355	-	soluble lytic murein transglycosylase
349	 33.48	0	400080..400769	-	229	167626574	-	Fphi_0356	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
350	 34.10	0	400766..402985	-	739	167626575	-	Fphi_0357	-	DNA topoisomerase IV subunit A
351	 28.71	-1	403120..403833	-	237	167626576	-	Fphi_0358	-	hypothetical protein
352	 32.75	0	403872..404723	-	283	167626577	-	Fphi_0359	-	hypothetical protein
353	 35.54	0	404725..405495	-	256	167626578	-	Fphi_0360	-	methionine aminopeptidase
354	 32.73	0	405616..405945	+	109	167626579	-	Fphi_0361	-	pyrophosphatase
355	 33.82	0	406188..406391	+	67	167626580	-	Fphi_0362	-	cold-shock DNA-binding domain-containing protein
356	 37.88	+1	406391..406588	+	65	167626581	-	Fphi_0363	-	30S ribosomal protein S21
357	 26.43	-1	406589..407095	-	168	167626582	-	Fphi_0364	-	acetyltransferase
358	 33.66	0	407153..408991	-	612	167626583	-	Fphi_0365	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
359	 36.80	+1	409020..410375	-	451	167626584	-	Fphi_0366	-	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase
360	 30.53	0	410397..411431	-	344	167626585	-	Fphi_0367	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
361	 34.14	0	411441..412427	-	328	167626586	-	Fphi_0368	-	hypothetical protein
362	 30.97	0	412518..413363	+	281	167626587	-	Fphi_0370	-	phosphatidylserine decarboxylase
363	 30.65	0	413336..413671	-	111	167626588	-	Fphi_0369	-	hypothetical protein
364	 33.56	0	414376..414807	+	143	167626589	-	Fphi_0372	-	M50B family metallopeptidase
365	 30.26	0	414804..415748	-	314	167626590	-	Fphi_0371	-	integrase, catalytic region
366	 24.44	-2	415855..416079	+	74	167626591	-	Fphi_0373	-	M50B family metallopeptidase
367	 29.19	-1	416214..417275	+	353	167626592	-	Fphi_0374	-	hypothetical protein
368	 28.87	-1	423699..424460	-	253	167626593	-	Fphi_0375	-	transposase for IS1106
369	 35.26	0	425561..427582	+	673	167626594	-	Fphi_0376	-	methionyl-tRNA synthetase
370	 32.76	0	427598..428809	+	403	167626595	-	Fphi_0377	-	major facilitator superfamily sugar transporter
371	 34.16	0	428815..429417	-	200	167626596	-	Fphi_0378	-	hypothetical protein
372	 31.54	0	429461..430075	-	204	167626597	-	Fphi_0379	-	SUA5/YciO/YrdC family protein
373	 28.25	-1	430135..430665	+	176	167626598	-	Fphi_0380	-	intracellular septation protein A family protein
374	 26.24	-2	430709..430990	+	93	167626599	-	Fphi_1924	-	hypothetical protein
375	 34.60	0	430993..432015	-	340	167626600	-	Fphi_0381	-	glucokinase
376	 34.93	0	432111..432863	+	250	167626601	-	Fphi_0382	-	ubiquinone/menaquinone biosynthesis methyltransferase
377	 28.91	-1	432865..433452	+	195	167626602	-	Fphi_0383	-	hypothetical protein
378	 36.59	+1	433445..435103	+	552	167626603	-	Fphi_0384	-	2-octaprenylphenol hydroxylase
379	 32.15	0	435104..435442	+	112	167626604	-	Fphi_0385	-	histidine triad (HIT) family protein
380	 30.89	0	435834..436487	-	217	167626605	-	Fphi_0386	-	purine/pyrimidine phosphoribosyl transferase family protein
381	 30.01	0	436494..437276	+	260	167626606	-	Fphi_0387	-	hypothetical protein
382	 30.76	0	437302..438195	-	297	167626607	-	Fphi_0388	-	hypothetical protein
383	 33.22	0	438273..439121	-	282	167626608	-	Fphi_0389	-	UDP-N-acetylmuramate dehydrogenase
384	 33.79	0	439129..440433	-	434	167626609	-	Fphi_0390	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
385	 35.55	0	440402..441799	-	465	167626610	-	Fphi_0391	-	GTP-binding protein EngA
386	 35.12	0	441881..443335	-	484	167626611	-	Fphi_0392	-	hypothetical protein
387	 39.28	+2	443348..445096	-	582	167626612	-	Fphi_0393	-	membrane protein of unknown function
388	 36.98	+1	445160..446971	-	603	167626613	-	Fphi_0394	-	malate dehydrogenase
389	 31.70	0	447122..448042	+	306	167626614	-	Fphi_0395	-	riboflavin kinase/FMN adenylyltransferase
390	 35.51	0	448135..450942	+	935	167626615	-	Fphi_0396	-	isoleucyl-tRNA synthetase
391	 32.79	0	450863..451411	+	182	167626616	-	Fphi_0398	-	lipoprotein signal peptidase II
392	 32.05	0	451406..451873	-	155	167626617	-	Fphi_0397	-	hypothetical protein
393	 34.46	0	452028..452648	+	206	167626618	-	Fphi_0399	-	ribosomal RNA large subunit methyltransferase J
394	 29.24	-1	452770..453966	+	398	167626619	-	Fphi_0401	-	major facilitator transporter
395	 29.43	-1	453963..454757	-	264	167626620	-	Fphi_0400	-	AraC family transcriptional regulator
396	 34.47	0	454808..455689	-	293	167626621	-	Fphi_0402	-	hypothetical protein
397	 32.34	0	455692..456399	-	235	167626622	-	Fphi_0403	-	glutamine amidotransferase, class I
398	 31.58	0	456411..457325	-	304	167626623	-	Fphi_0404	-	chromosome partition protein B
399	 35.70	0	457329..457961	-	210	167626624	-	Fphi_0405	-	chromosome partition protein A, ATPase
400	 34.07	0	458160..460457	+	765	167626625	-	Fphi_0406	-	DNA topoisomerase I
401	 31.27	0	460666..462021	-	451	167626626	-	Fphi_0407	-	hypothetical protein
402	 33.74	0	462167..462652	-	161	167626627	-	Fphi_0408	-	hypothetical protein
403	 32.56	0	462661..463176	-	171	167626628	-	Fphi_0409	-	hypothetical protein
404	 32.29	0	463274..463753	-	159	167626629	-	Fphi_0410	-	hypothetical protein
405	 37.87	+1	463877..464317	-	146	167626630	-	Fphi_0411	-	lipoprotein of unknown function
406	 30.38	0	464392..464763	-	123	167626631	-	Fphi_0412	-	hypothetical protein
407	 34.78	0	464853..466859	+	668	167626632	-	Fphi_0413	-	oligopeptidase A
408	 26.84	-1	466952..467305	+	117	167626633	-	Fphi_0415	-	hypothetical protein
409	 35.34	0	467302..468399	-	365	167626634	-	Fphi_0414	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
410	 40.04	+2	468401..468892	-	163	167626635	-	Fphi_0416	-	phosphoribosylaminoimidazole carboxylase
411	 34.72	0	469016..469591	-	191	167626636	-	Fphi_0417	-	phosphoribosylglycinamide formyltransferase
412	 35.89	0	469594..471903	-	769	167626637	-	Fphi_0418	-	phosphoribosylaminoimidazolesuccinocarboxamide synthase, phosphoribosylamine--glycine ligase
413	 35.82	0	471903..472946	-	347	167626638	-	Fphi_0419	-	phosphoribosylaminoimidazole synthetase
414	 38.28	+1	473061..473909	-	282	167626639	-	Fphi_0420	-	methenyltetrahydrofolate cyclohydrolase
415	 30.86	0	474040..474768	-	242	167626640	-	Fphi_0421	-	lipid A 1-phosphatase
416	 38.56	+1	475380..475838	+	152	167626641	-	Fphi_0422	-	type IV pili fiber building block protein
417	 34.02	0	476011..476448	+	145	167626642	-	Fphi_0423	-	type IV pili, pilus assembly protein
418	 33.50	0	476558..477787	+	409	167626643	-	Fphi_0424	-	type IV pili, pilus assembly protein
419	 35.82	0	478675..480324	-	549	167626644	-	Fphi_0425	-	DNA repair protein RecN
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.