IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
244	 32.84	0	267394..267798	-	134	167626469	-	Fphi_0252	-	hypothetical protein
245	 33.81	0	267946..269424	+	492	167626470	-	Fphi_0253	-	alkaline phosphatase
246	 37.24	+1	269427..270347	+	306	167626471	-	Fphi_0254	-	asparaginase
247	 34.13	0	270349..270852	-	167	167626472	-	Fphi_0255	-	hypothetical protein
248	 33.47	0	271022..271744	+	240	167626473	-	Fphi_0256	-	copper homeostasis protein CutC family protein
249	 29.57	0	271768..272511	-	247	167626474	-	Fphi_0257	-	transposase
250	 32.60	0	272616..273293	+	225	167626475	-	Fphi_0258	-	phosphoglycolate phosphatase
251	 38.38	+1	273404..274354	+	316	167626476	-	Fphi_0259	-	thioredoxin reductase
252	 30.14	0	274380..275600	-	406	167626477	-	Fphi_0260	-	major facilitator transporter
253	 33.83	0	275938..277743	-	601	167626478	-	Fphi_0261	-	DNA mismatch repair enzyme with ATPase activity
254	 32.88	0	277754..278410	-	218	167626479	-	Fphi_0262	-	hypothetical protein
255	 38.28	+1	278475..279182	-	235	167626480	-	Fphi_0263	-	hypothetical protein
256	 32.54	0	279349..280233	+	294	167626481	-	Fphi_0264	-	GTPase
257	 31.99	0	280291..281478	-	395	167626482	-	Fphi_0265	-	ATP-binding cassette putrescine uptake system, periplasmic protein
258	 33.83	0	281563..282972	+	469	167626483	-	Fphi_0266	-	amino acid-polyamine-organocation (APC) superfamily protein
259	 29.09	-1	283065..284171	+	368	167626484	-	Fphi_0267	-	PerM family protein
260	 31.90	0	284165..285907	+	580	167626485	-	Fphi_0268	-	single-stranded-DNA-specific exonuclease
261	 26.95	-1	285904..286686	+	260	167626486	-	Fphi_0269	-	biotin-(acetyl-CoA-carboxylase) ligase
262	 29.87	0	286683..287606	+	307	167626487	-	Fphi_0270	-	tRNA synthetase, class II (D, K and N)
263	 27.23	-1	287621..288751	-	376	167626488	-	Fphi_0271	-	mechanosensitive ion channel protein
264	 30.91	0	288760..289419	-	219	167626489	-	Fphi_0272	-	hypothetical protein
265	 36.95	+1	289513..290868	-	451	167626490	-	Fphi_0273	-	acetyl-CoA carboxylase, biotin carboxylase subunit
266	 37.15	+1	290934..291404	-	156	167626491	-	Fphi_0274	-	acetyl-CoA carboxylase, biotin carboxy carrier protein subunit
267	 31.51	0	291408..291845	-	145	167626492	-	Fphi_0275	-	3-dehydroquinate dehydratase
268	 30.80	0	291847..292674	-	275	167626493	-	Fphi_0276	-	diadenosine tetraphosphatase
269	 29.66	0	292687..293475	-	262	167626494	-	Fphi_0277	-	dimethyladenosine transferase
270	 34.32	0	293477..294889	-	470	167626495	-	Fphi_0278	-	peptidyl-prolyl cis-trans isomerase (PPIase)
271	 34.17	0	294889..297507	-	872	167626496	-	Fphi_0279	-	organic solvent tolerance protein, OstA
272	 34.01	0	297456..299384	+	642	167626497	-	Fphi_0280	-	arginyl-tRNA synthetase
273	 33.88	0	299469..300920	+	483	167626498	-	Fphi_0281	-	alkaline phosphatase
274	 33.43	0	300933..301991	-	352	167626499	-	Fphi_0282	-	asparaginase
275	 31.50	0	302104..302595	-	163	167626500	-	Fphi_0283	-	RNA methyltransferase
276	 35.49	0	302573..303544	-	323	167626501	-	Fphi_0284	-	delta-aminolevulinic acid dehydratase
277	 34.41	0	303557..303835	-	92	167626502	-	Fphi_0285	-	hypothetical protein
278	 27.61	-1	303846..304754	-	302	167626503	-	Fphi_0286	-	DNA polymerase III, delta prime subunit
279	 32.84	0	304762..305778	-	338	167626504	-	Fphi_0287	-	putative periplasmic protease
280	 31.11	0	305791..306420	-	209	167626505	-	Fphi_0288	-	stringent starvation protein A
281	 33.65	0	306510..306824	+	104	167626506	-	Fphi_0289	-	dissimilatory sulfite reductase subunit gamma
282	 27.65	-1	306846..307109	+	87	167626507	-	Fphi_0290	-	hypothetical protein
283	 30.39	0	307204..308970	+	588	167626508	-	Fphi_0291	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
284	 33.86	0	308995..309951	-	318	167626509	-	Fphi_0292	-	glycosyl transferase, group 2 family protein
285	 29.62	0	310052..310858	+	268	167626510	-	Fphi_0293	-	hypothetical protein
286	 33.91	0	310865..312073	-	402	167626511	-	Fphi_0294	-	cell division protein FtsW
287	 30.04	0	312090..313334	-	414	167626512	-	Fphi_0295	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
288	 33.15	0	313334..314431	-	365	167626513	-	Fphi_0296	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
289	 32.14	0	314506..316092	-	528	167626514	-	Fphi_0297	-	phosphoenolpyruvate carboxykinase
290	 33.09	0	316240..317901	+	553	167626515	-	Fphi_0298	-	glutaminyl-tRNA synthetase
291	 29.89	0	317921..319345	-	474	167626516	-	Fphi_0299	-	alkaline phosphatase
292	 32.95	0	319417..321258	-	613	167626517	-	Fphi_0300	-	(putative) drug resistance ATPase-1 (drug RA1) family protein
293	 34.07	0	321292..322518	-	408	167626518	-	Fphi_0301	-	drug:H+ antiporter-1 (DHA1) family protein
294	 30.27	0	322606..323649	-	347	167626519	-	Fphi_0302	-	hypothetical protein
295	 32.03	0	323895..325118	+	407	167626520	-	Fphi_0303	-	drug:H+ antiporter-1 (DHA1) family protein
296	 34.27	0	325139..325885	-	248	167626521	-	Fphi_0304	-	tRNA/rRNA methyltransferase
297	 32.75	0	325882..327252	-	456	167626522	-	Fphi_0305	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
298	 30.26	0	327374..328318	-	314	167626523	-	Fphi_0306	-	integrase, catalytic region
299	 34.45	0	328459..329085	+	208	167626524	-	Fphi_0307	-	orotate phosphoribosyltransferase
300	 29.83	0	329075..329788	+	237	167626525	-	Fphi_0308	-	UDP-2,3-diacylglucosamine hydrolase
301	 32.57	0	329888..331855	+	655	167626526	-	Fphi_0309	-	Beta-galactosidase
302	 31.98	0	331867..333051	+	394	167626527	-	Fphi_0310	-	arabinose efflux permease-like protein
303	 34.81	0	333075..334361	-	428	167626528	-	Fphi_0311	-	threonine synthase
304	 34.91	0	334374..335327	-	317	167626529	-	Fphi_0312	-	homoserine kinase
305	 34.70	0	335330..337750	-	806	167626530	-	Fphi_0313	-	aspartate kinase, homoserine dehydrogenase
306	 35.15	0	337844..338944	+	366	167626531	-	Fphi_0314	-	aspartate-semialdehyde dehydrogenase
307	 34.80	0	338993..339811	-	272	167626532	-	Fphi_0315	-	hypothetical protein
308	 32.97	0	339820..341178	-	452	167626533	-	Fphi_0316	-	D-alanyl-D-alanine-adding enzyme
309	 25.78	-2	341207..341908	-	233	167626534	-	Fphi_0317	-	hypothetical protein
310	 33.84	0	341966..342556	-	196	167626535	-	Fphi_0318	-	hypothetical protein
311	 30.93	0	342612..344153	-	513	167626536	-	Fphi_0319	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
312	 37.60	+1	344364..345254	-	296	167626537	-	Fphi_0320	-	glycyl-tRNA synthetase subunit alpha
313	 29.45	-1	345358..345795	-	145	167626538	-	Fphi_0321	-	hypothetical protein
314	 32.21	0	345978..347402	-	474	167626539	-	Fphi_0322	-	4-alpha-glucanotransferase
315	 31.92	0	347619..349886	-	755	167626540	-	Fphi_0323	-	phosphorylase
316	 30.26	0	350048..350992	+	314	167626541	-	Fphi_0324	-	integrase, catalytic region
317	 37.86	+1	351056..352513	-	485	167626542	-	Fphi_0325	-	glycogen synthase
318	 37.11	+1	352523..353794	-	423	167626543	-	Fphi_0326	-	glucose-1-phosphate adenylyltransferase
319	 36.57	+1	353830..355464	-	544	167626544	-	Fphi_0327	-	phosphoglucomutase
320	 35.41	0	355747..357669	+	640	167626545	-	Fphi_0328	-	glycogen branching enzyme
321	 33.74	0	357730..360942	+	1070	167626546	-	Fphi_0329	-	pullulonase, type I
322	 31.44	0	360952..361794	+	280	167626547	-	Fphi_0330	-	shikimate 5-dehydrogenase
323	 25.21	-2	361794..363122	+	442	167626548	-	Fphi_0331	-	hypothetical protein
324	 31.62	0	363135..364010	-	291	167626549	-	Fphi_0332	-	homoserine O-succinyltransferase
325	 36.38	+1	363982..365292	-	436	167626550	-	Fphi_0333	-	O-acetylhomoserine aminocarboxypropyltransferase
326	 31.85	0	365529..367007	-	492	167626551	-	Fphi_0334	-	GDSL-like lipolytic enzyme
327	 32.62	0	367074..367355	-	93	167626552	-	Fphi_1921	-	hypothetical protein
328	 36.42	+1	368036..370918	-	960	167626553	-	Fphi_0335	-	hypothetical protein
329	 30.61	0	370990..371760	-	256	167626554	-	Fphi_0336	-	hypothetical protein
330	 38.11	+1	371803..373248	-	481	167626555	-	Fphi_0337	-	glycine dehydrogenase subunit 2
331	 37.06	+1	373254..374621	-	455	167626556	-	Fphi_0338	-	glycine dehydrogenase subunit 1
332	 34.64	0	374688..375071	-	127	167626557	-	Fphi_0339	-	glycine cleavage system H protein (lipoate-binding)
333	 37.79	+1	375126..376202	-	358	167626558	-	Fphi_0340	-	glycine cleavage system aminomethyltransferase T
334	 33.47	0	376291..378426	-	711	167626559	-	Fphi_0341	-	lysine decarboxylase
335	 34.05	0	378522..379217	-	231	167626560	-	Fphi_0342	-	ABC transporter, ATPase component
336	 34.28	0	379210..380472	-	420	167626561	-	Fphi_0343	-	ABC transporter, involved in lipoprotein release, permease component
337	 31.85	0	381171..381776	-	201	167626562	-	Fphi_0344	-	peptide deformylase
338	 31.31	0	381797..383773	-	658	167626563	-	Fphi_0345	-	hypothetical protein
339	 28.80	-1	384078..385202	+	374	167626564	-	Fphi_0346	-	amino acid permease-like protein
340	 33.33	0	385337..385534	-	65	167626565	-	Fphi_0347	-	hypothetical protein
341	 28.87	-1	385578..385913	-	111	167626566	-	Fphi_0348	-	hypothetical protein
342	 36.09	+1	386134..389613	-	1159	167626567	-	Fphi_0349	-	DNA-directed DNA polymerase
343	 29.16	-1	389805..391889	+	694	167626568	-	Fphi_0350	-	small-conductance mechanosensitive channel-like protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.