IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1812	 30.53	0	1934722..1935897	-	391	167628037	-	Fphi_1809	-	flavohemoprotein
1813	 26.24	-2	1936003..1936425	+	140	167628038	-	Fphi_1810	-	putative transcriptional regulator
1814	 28.34	-1	1936435..1938135	-	566	167628039	-	Fphi_1811	-	4-amino-4-deoxy-L-arabinose transferase-like protein
1815	 35.41	0	1938145..1939446	-	433	167628040	-	Fphi_1812	-	glutamate-1-semialdehyde-2,1-aminomutase
1816	 32.00	0	1939436..1940410	-	324	167628041	-	Fphi_1813	-	glutathione synthetase
1817	 33.97	0	1940414..1941352	-	312	167628042	-	Fphi_1814	-	methionyl-tRNA formyltransferase
1818	 31.04	0	1941355..1941747	-	130	167628043	-	Fphi_1815	-	hypothetical protein
1819	 32.08	0	1941750..1942148	-	132	167628044	-	Fphi_1816	-	hypothetical protein
1820	 24.78	-2	1942305..1942643	+	112	167628045	-	Fphi_1817	-	ArsR family transcriptional regulator
1821	 31.20	0	1942647..1943675	+	342	167628046	-	Fphi_1818	-	ArsB arsenite/antimonite exporter
1822	 27.58	-1	1943727..1944056	+	109	167628047	-	Fphi_1819	-	putative membrane transporter of cations and cationic drugs, multidrug resistance protein
1823	 30.97	0	1944068..1946224	-	718	167628048	-	Fphi_1820	-	23S rRNA m(2)G2445 methyltransferase
1824	 31.50	0	1946589..1947785	+	398	167628049	-	Fphi_1821	-	phage integrase
1825	 26.08	-2	1947789..1949015	-	408	167628050	-	Fphi_1822	-	hypothetical protein
1826	 24.91	-2	1949035..1950780	-	581	167628051	-	Fphi_1823	-	hypothetical protein
1827	 32.18	0	1950865..1953543	+	892	167628052	-	Fphi_1824	-	hypothetical protein
1828	 24.54	-2	1953697..1956789	+	1030	167628053	-	Fphi_1825	-	hypothetical protein
1829	 30.92	0	1956890..1957885	+	331	167628054	-	Fphi_1826	-	hypothetical protein
1830	 33.85	0	1958054..1959979	+	641	167628055	-	Fphi_1827	-	DEAD/DEAH box helicase-like protein
1831	 31.16	0	1959969..1961165	+	398	167628056	-	Fphi_1828	-	hypothetical protein
1832	 28.87	-1	1961180..1961470	-	96	167628057	-	Fphi_1829	-	XRE family transcriptional regulator
1833	 33.02	0	1961467..1961787	-	106	167628058	-	Fphi_1830	-	hypothetical protein
1834	 33.53	0	1961875..1962381	-	168	167628059	-	Fphi_1831	-	putative antirestriction protein
1835	 25.60	-2	1962912..1963118	+	68	167628060	-	Fphi_1832	-	hypothetical protein
1836	 31.47	0	1963204..1964547	+	447	167628061	-	Fphi_1833	-	Na+/H+ antiporter NhaA
1837	 33.75	0	1964578..1965300	-	240	167628062	-	Fphi_1834	-	hypothetical protein
1838	 31.94	0	1965297..1967312	-	671	167628063	-	Fphi_1835	-	hypothetical protein
1839	 32.53	0	1967832..1969082	-	416	167628064	-	Fphi_1836	-	hypothetical protein
1840	 33.33	0	1969075..1969275	-	66	167628065	-	Fphi_1931	-	phage transcriptional regulator, AlpA
1841	 31.62	0	1969720..1969953	+	77	167628066	-	Fphi_1837	-	hypothetical protein
1842	 27.13	-1	1970087..1970344	-	85	167628067	-	Fphi_1838	-	hypothetical protein
1843	 30.57	0	1970347..1971213	-	288	167628068	-	Fphi_1839	-	recombination associated protein
1844	 29.61	0	1971285..1971794	-	169	167628069	-	Fphi_1840	-	hypothetical protein
1845	 34.54	0	1971883..1972875	+	330	167628070	-	Fphi_1841	-	rhodanese sulfurtransferase
1846	 35.60	0	1973007..1973933	+	308	167628071	-	Fphi_1842	-	coproporphyrinogen III oxidase
1847	 32.57	0	1974017..1975069	+	350	167628072	-	Fphi_1843	-	phosphoserine aminotransferase
1848	 33.48	0	1975056..1975724	+	222	167628073	-	Fphi_1845	-	cytidylate kinase
1849	 32.70	0	1975711..1976025	-	104	167628074	-	Fphi_1844	-	anti-ECFsigma factor, ChrR
1850	 29.36	-1	1976132..1977742	+	536	167628075	-	Fphi_1846	-	hypothetical protein
1851	 33.33	0	1977778..1979268	-	496	167628076	-	Fphi_1847	-	L-aspartate oxidase
1852	 34.49	0	1979271..1980134	-	287	167628077	-	Fphi_1848	-	nicotinate-nucleotide diphosphorylase (carboxylating)
1853	 36.45	+1	1980144..1981169	-	341	167628078	-	Fphi_1849	-	quinolinate synthetase
1854	 32.29	0	1981189..1981761	-	190	167628079	-	Fphi_1850	-	guanylate kinase
1855	 34.71	0	1981870..1983615	-	581	167628080	-	Fphi_1851	-	DEAD-box subfamily ATP-dependent helicase
1856	 35.48	0	1983681..1983959	-	92	167628081	-	Fphi_1852	-	parvulin-like peptidyl-prolyl isomerase domain-containing protein
1857	 33.41	0	1985499..1986881	-	460	167628082	-	Fphi_1855	-	2-alkenal reductase
1858	 34.41	0	1986972..1987997	+	341	167628083	-	Fphi_1856	-	galactose-1-phosphate uridylyltransferase
1859	 30.92	0	1988000..1989157	+	385	167628084	-	Fphi_1857	-	galactokinase
1860	 29.63	0	1989185..1989940	-	251	167628085	-	Fphi_1858	-	hypothetical protein
1861	 30.26	0	1990219..1991163	-	314	167628086	-	Fphi_1859	-	integrase, catalytic region
1862	 29.29	-1	1991314..1991709	-	131	167628087	-	Fphi_1860	-	histidine triad family protein
1863	 34.66	0	1991702..1992454	-	250	167628088	-	Fphi_1861	-	3-deoxy-manno-octulosonate cytidylyltransferase
1864	 30.69	0	1992447..1992635	-	62	167628089	-	Fphi_1862	-	hypothetical protein
1865	 35.23	0	1992635..1993900	-	421	167628090	-	Fphi_1863	-	hypothetical protein
1866	 27.94	-1	1993995..1994624	-	209	167628091	-	Fphi_1864	-	acid phosphatase/phosphotransferase
1867	 34.48	0	1994694..1996532	-	612	167628092	-	Fphi_1865	-	excinuclease ABC, C subunit
1868	 28.16	-1	1996641..1997741	+	366	167628093	-	Fphi_1866	-	ribonuclease D
1869	 31.84	0	1997763..1998968	+	401	167628094	-	Fphi_1868	-	drug:H+ antiporter-1 (DHA1) family protein
1870	 36.53	+1	1998965..1999339	-	124	167628095	-	Fphi_1867	-	hypothetical protein
1871	 33.05	0	1999409..2001496	-	695	167628096	-	Fphi_1869	-	glycine--tRNA ligase
1872	 28.11	-1	2001618..2002364	+	248	167628097	-	Fphi_1870	-	TatD family hydrolase
1873	 29.05	-1	2002368..2003417	+	349	167628098	-	Fphi_1871	-	DNA replication and repair protein RecF
1874	 30.24	0	2003429..2003719	+	96	167628099	-	Fphi_1872	-	hypothetical protein
1875	 33.72	0	2003720..2004241	-	173	167628100	-	Fphi_1873	-	hypothetical protein
1876	 30.85	0	2004270..2004632	-	120	167628101	-	Fphi_1874	-	methylation protein-like protein
1877	 30.58	0	2005042..2005731	-	229	167628102	-	Fphi_1875	-	hypothetical protein
1878	 31.15	0	2005742..2006107	-	121	167628103	-	Fphi_1876	-	hypothetical protein
1879	 33.01	0	2006275..2007189	-	304	167628104	-	Fphi_1877	-	hypothetical protein
1880	 37.04	+1	2007200..2009143	-	647	167628105	-	Fphi_1878	-	acyl-coenzyme A synthetase/AMP-(fatty) acid ligase
1881	 35.30	0	2009254..2010117	-	287	167628106	-	Fphi_1879	-	UTP--glucose-1-phosphate uridylyltransferase
1882	 32.11	0	2010133..2011272	-	379	167628107	-	Fphi_1880	-	Co/Zn/Cd cation transporter
1883	 30.26	0	2011453..2012397	+	314	167628108	-	Fphi_1881	-	integrase, catalytic region
1884	 31.22	0	2012415..2012981	-	188	167628109	-	Fphi_1882	-	hypothetical protein
1885	 30.26	0	2014125..2015069	+	314	167628110	-	Fphi_1884	-	integrase, catalytic region
1886	 24.59	-2	2015013..2016521	-	502	167628111	-	Fphi_1883	-	hypothetical protein
1887	 29.13	-1	2016541..2019396	-	951	167628112	-	Fphi_1885	-	restriction endonuclease
1888	 26.18	-2	2019626..2020156	-	176	167628113	-	Fphi_1886	-	hypothetical protein
1889	 29.12	-1	2020225..2020509	-	94	167628114	-	Fphi_1887	-	endonuclease
1890	 24.58	-2	2020568..2020807	-	79	167628115	-	Fphi_1888	-	hypothetical protein
1891	 30.26	0	2020949..2021893	+	314	167628116	-	Fphi_1890	-	integrase, catalytic region
1892	 27.17	-1	2021837..2022193	-	118	167628117	-	Fphi_1889	-	hypothetical protein
1893	 28.21	-1	2024495..2024923	-	142	167628118	-	Fphi_1893	-	hypothetical protein
1894	 33.53	0	2024992..2025498	-	168	167628119	-	Fphi_1894	-	putative antirestriction protein
1895	 28.39	-1	2026031..2028052	-	673	167628120	-	Fphi_1895	-	hypothetical protein
1896	 38.05	+1	2028121..2029095	-	324	167628121	-	Fphi_1896	-	tRNA-dihydrouridine synthase
1897	 32.51	0	2029085..2029930	-	281	167628122	-	Fphi_1897	-	ribosomal protein L11 methyltransferase
1898	 30.97	0	2030048..2030554	-	168	167628123	-	Fphi_1898	-	hypothetical protein
1899	 38.04	+1	2030672..2030926	-	84	167628124	-	Fphi_1899	-	hypothetical protein
1900	 30.38	0	2031051..2032067	+	338	167628125	-	Fphi_1900	-	ferrochelatase
1901	 34.12	0	2032052..2033446	+	464	167628126	-	Fphi_1901	-	deoxyribodipyrimidine photo-lyase
1902	 35.61	0	2033618..2034805	+	395	167628127	-	Fphi_1902	-	phosphopyruvate hydratase
1903	 27.73	-1	2034827..2035825	-	332	167628128	-	Fphi_1903	-	aldose 1-epimerase
1904	 30.02	0	2035806..2036981	-	391	167628129	-	Fphi_1904	-	P-pantothenate cysteine ligase/P-pantothenoylcysteine decarboxylase
1905	 28.69	-1	2036994..2038178	-	394	167628130	-	Fphi_1905	-	major facilitator transporter
1906	 33.13	0	2038253..2039761	-	502	167628131	-	Fphi_1906	-	amino acid transporter
1907	 34.44	0	2039915..2043979	-	1354	167628132	-	Fphi_1907	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1908	 28.47	-1	2043997..2044284	-	95	167628133	-	Fphi_1908	-	hypothetical protein
1909	 30.73	0	2044503..2044886	+	127	167628134	-	Fphi_1909	-	hypothetical protein
1910	 31.40	0	2044955..2045161	-	68	167628135	-	Fphi_1910	-	hypothetical protein
1911	 29.83	0	2045233..2045775	-	180	167628136	-	Fphi_1911	-	3-dehydroquinate synthase
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.