IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
130	 32.91	0	134316..135026	-	236	167626355	-	Fphi_0133	-	hypothetical protein
131	 28.71	-1	135023..135433	-	136	167626356	-	Fphi_0134	-	hypothetical protein
132	 31.05	0	135443..136537	+	364	167626357	-	Fphi_0136	-	hypothetical protein
133	 29.65	0	136523..137173	-	216	167626358	-	Fphi_0135	-	HAD-superfamily hydrolase
134	 29.74	0	137180..137986	-	268	167626359	-	Fphi_0137	-	lignostilbene-alpha beta-dioxygenase-like protein
135	 30.26	0	138103..139047	+	314	167626360	-	Fphi_0139	-	integrase, catalytic region
136	 30.11	0	139019..139453	-	144	167626361	-	Fphi_0138	-	hypothetical protein
137	 30.26	0	139671..140615	+	314	167626362	-	Fphi_0140	-	integrase, catalytic region
138	 34.05	0	140852..141973	+	373	167626363	-	Fphi_0141	-	ATP-binding cassette putrescine uptake system, ATP-binding protein
139	 31.97	0	141973..142854	+	293	167626364	-	Fphi_0142	-	ATP-binding cassette putrescine uptake system, membrane protein, subunit H
140	 33.21	0	142867..143670	+	267	167626365	-	Fphi_0143	-	ornithine carbamoyltransferase
141	 29.48	-1	143676..144272	-	198	167626366	-	Fphi_0144	-	putative threonine efflux protein
142	 38.04	+1	144401..144655	-	84	167626367	-	Fphi_0145	-	50S ribosomal protein L27
143	 38.10	+1	144686..145000	-	104	167626368	-	Fphi_0146	-	50S ribosomal protein L21
144	 31.23	0	145220..145789	-	189	167626369	-	Fphi_0147	-	DNA-3-methyladenine glycosylase I
145	 30.77	0	145970..146515	+	181	167626370	-	Fphi_0148	-	hypothetical protein
146	 35.10	0	146686..149409	-	907	167626371	-	Fphi_0149	-	preprotein translocase subunit SecA
147	 28.48	-1	149542..150591	+	349	167626372	-	Fphi_0150	-	hypothetical protein
148	 26.30	-1	150598..151038	+	146	167626373	-	Fphi_0151	-	hypothetical protein
149	 32.92	0	151044..151766	-	240	167626374	-	Fphi_0152	-	purine-nucleoside phosphorylase
150	 38.67	+1	151970..153919	-	649	167626375	-	Fphi_0153	-	microtubule-severing ATPase
151	 31.39	0	154121..155512	+	463	167626376	-	Fphi_0154	-	major facilitator superfamily transporter
152	 35.07	0	155513..158335	-	940	167626377	-	Fphi_0155	-	excinuclease ABC, subunit A
153	 35.40	0	158373..158855	-	160	167626378	-	Fphi_0156	-	GreA/GreB family elongation factor
154	 33.68	0	158892..159476	-	194	167626379	-	Fphi_0157	-	type IV pili, pilus assembly protein
155	 34.38	0	159476..161098	-	540	167626380	-	Fphi_0158	-	glucose-6-phosphate isomerase
156	 28.90	-1	161085..161738	-	217	167626381	-	Fphi_0159	-	thiamine pyrophosphokinase
157	 39.15	+1	161800..163260	-	486	167626382	-	Fphi_0160	-	malate dehydrogenase
158	 35.69	0	163364..164803	-	479	167626383	-	Fphi_0161	-	leucyl aminopeptidase
159	 33.24	0	164969..166051	+	360	167626384	-	Fphi_0162	-	membrane protein of unknown function
160	 31.82	0	166052..167110	+	352	167626385	-	Fphi_0163	-	membrane protein of unknown function
161	 31.82	0	167120..168373	+	417	167626386	-	Fphi_0164	-	M16 family metallopeptidase
162	 29.17	-1	168379..169602	+	407	167626387	-	Fphi_0165	-	M16 family metallopeptidase
163	 27.46	-1	169603..170181	+	192	167626388	-	Fphi_0166	-	N6-adenine-specific methylase
164	 32.26	0	170214..170864	+	216	167626389	-	Fphi_0167	-	hypothetical protein
165	 33.00	0	170923..171531	-	202	167626390	-	Fphi_0168	-	tRNA-(ms(2)io(6)a)-hydroxylase
166	 34.20	0	171644..172447	+	267	167626391	-	Fphi_0169	-	uridine phosphorylase
167	 34.33	0	172464..172865	+	133	167626392	-	Fphi_0170	-	cytidine deaminase
168	 33.37	0	173175..176207	-	1010	167626393	-	Fphi_0171	-	D-lactate dehydrogenase (cytochrome)
169	 35.15	0	176420..177958	+	512	167626394	-	Fphi_0172	-	phosphoglyceromutase
170	 34.89	0	177973..179253	+	426	167626395	-	Fphi_0173	-	seryl-tRNA synthetase
171	 35.12	0	179354..180250	+	298	167626396	-	Fphi_0174	-	ROK family protein
172	 31.43	0	180336..181595	+	419	167626397	-	Fphi_0175	-	multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter
173	 29.90	0	181598..181801	-	67	167626398	-	Fphi_0176	-	hypothetical protein
174	 32.10	0	181821..182225	-	134	167626399	-	Fphi_0177	-	hypothetical protein
175	 34.19	0	182272..182505	-	77	167626400	-	Fphi_0178	-	hypothetical protein
176	 33.56	0	182698..184479	+	593	167626401	-	Fphi_0179	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
177	 33.21	0	184476..186125	+	549	167626402	-	Fphi_0180	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
178	 30.26	0	186380..187324	+	314	167626403	-	Fphi_0182	-	integrase, catalytic region
179	 34.21	0	190613..190840	+	75	167626404	-	Fphi_0184	-	hypothetical protein
180	 26.08	-2	190855..191364	+	169	167626405	-	Fphi_0186	-	hypothetical protein
181	 29.27	-1	192322..192567	-	81	167626406	-	Fphi_1922	-	hypothetical protein
182	 30.26	0	192687..193631	+	314	167626407	-	Fphi_0189	-	integrase, catalytic region
183	 30.76	0	193603..194574	-	323	167626408	-	Fphi_0188	-	hypothetical protein
184	 34.52	0	194634..196229	-	531	167626409	-	Fphi_0190	-	type I restriction-modification system methyltransferase subunit like protein
185	 33.73	0	196323..197573	-	416	167626410	-	Fphi_0191	-	C4-dicarboxylate transport protein
186	 31.62	0	197714..198238	+	174	167626411	-	Fphi_0192	-	putative ribosomal protein L11
187	 35.70	0	198261..198641	-	126	167626412	-	Fphi_0193	-	endoribonuclease L-PSP, putative
188	 35.79	0	198641..200185	-	514	167626413	-	Fphi_0194	-	sulfate permease family protein
189	 31.70	0	200282..201262	-	326	167626414	-	Fphi_0195	-	ABC -2 type transporter
190	 30.26	0	201293..202237	-	314	167626415	-	Fphi_0196	-	integrase, catalytic region
191	 33.12	0	202444..203376	-	310	167626416	-	Fphi_0197	-	ABC transporter, ATP-binding protein
192	 30.14	0	203373..204344	-	323	167626417	-	Fphi_0198	-	hypothetical protein
193	 33.53	0	204488..205516	+	342	167626418	-	Fphi_0199	-	glycerophosphoryl diester phosphodiesterase
194	 36.77	+1	205621..206928	+	435	167626419	-	Fphi_0200	-	glycerol-3-phosphate transporter
195	 28.85	-1	206912..207067	+	51	167626420	-	Fphi_0201	-	hypothetical protein
196	 37.04	+1	207145..207684	+	179	167626421	-	Fphi_0202	-	short chain dehydrogenase/reductase family oxidoreductase
197	 37.61	+1	207889..210108	+	739	167626422	-	Fphi_0203	-	peroxidase/catalase
198	 31.29	0	210209..211531	+	440	167626423	-	Fphi_0205	-	dGTP triphosphohydrolase
199	 31.94	0	211515..212735	-	406	167626424	-	Fphi_0204	-	metabolite:H+ symporter (MHS) family protein
200	 32.46	0	212803..213147	-	114	167626425	-	Fphi_0206	-	hypothetical protein
201	 27.87	-1	213148..214446	-	432	167626426	-	Fphi_0207	-	MATE efflux family protein
202	 38.48	+1	214752..217160	+	802	167626427	-	Fphi_0208	-	hypothetical protein
203	 37.53	+1	217424..219781	+	785	167626428	-	Fphi_0209	-	glycosy hydrolase family protein
204	 30.26	0	219874..220818	-	314	167626429	-	Fphi_0210	-	integrase, catalytic region
205	 30.94	0	223516..224352	-	278	167626430	-	Fphi_0213	-	formyltetrahydrofolate deformylase
206	 37.14	+1	224434..225063	-	209	167626431	-	Fphi_0214	-	uracil phosphoribosyltransferase
207	 37.10	+1	225233..227911	-	892	167626432	-	Fphi_0215	-	glycosyl hydrolase family chitinase
208	 33.75	0	228399..229592	+	397	167626433	-	Fphi_0216	-	2-amino-3-ketobutyrate coenzyme A ligase
209	 37.50	+1	229610..230665	+	351	167626434	-	Fphi_0217	-	L-threonine 3-dehydrogenase
210	 28.74	-1	230666..231928	+	420	167626435	-	Fphi_0218	-	serine permease
211	 32.90	0	231933..232625	-	230	167626436	-	Fphi_0219	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
212	 29.90	0	232615..232905	-	96	167626437	-	Fphi_0220	-	cell division protein, septum formation initiator
213	 37.50	+1	232913..234280	-	455	167626438	-	Fphi_0221	-	phosphopyruvate hydratase
214	 34.06	0	234382..235623	-	413	167626439	-	Fphi_0222	-	major facilitator transporter
215	 29.42	-1	235677..236468	-	263	167626440	-	Fphi_0223	-	nicotinamide mononucleotide transporter
216	 35.44	0	236490..237437	-	315	167626441	-	Fphi_0224	-	ROK family protein
217	 33.23	0	237437..238402	-	321	167626442	-	Fphi_0225	-	ROK family protein
218	 33.56	0	238405..239754	-	449	167626443	-	Fphi_0226	-	23S rRNA 5-methyluridine methyltransferase
219	 32.62	0	239822..240385	-	187	167626444	-	Fphi_0227	-	hypothetical protein
220	 31.96	0	240634..240852	-	72	167626445	-	Fphi_0228	-	DNA-directed RNA polymerase, subunit K/omega
221	 30.18	0	240845..241510	-	221	167626446	-	Fphi_0229	-	uridine kinase
222	 35.14	0	241521..242348	-	275	167626447	-	Fphi_0230	-	2-dehydro-3-deoxyphosphooctonate aldolase
223	 34.19	0	242390..242740	-	116	167626448	-	Fphi_0231	-	iron-sulfur cluster insertion protein ErpA
224	 35.88	0	242746..244827	-	693	167626449	-	Fphi_0232	-	polynucleotide phosphorylase/polyadenylase
225	 31.46	0	244886..245152	-	88	167626450	-	Fphi_0233	-	30S ribosomal protein S15
226	 36.36	+1	245259..246974	-	571	167626451	-	Fphi_0234	-	peptidoglycan glycosyltransferase
227	 35.33	0	246943..247293	-	116	167626452	-	Fphi_0235	-	hypothetical protein
228	 32.69	0	247290..248216	-	308	167626453	-	Fphi_0236	-	S-adenosylmethionine-dependent methyltransferase
229	 33.29	0	248213..250312	-	699	167626454	-	Fphi_0237	-	AMP-binding protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.