IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1708	 25.61	-2	1835385..1835669	-	94	167627933	-	Fphi_1707	-	hypothetical protein
1709	 36.78	+1	1835697..1837031	-	444	167627934	-	Fphi_1708	-	Serine-type D-Ala-D-Ala carboxypeptidase
1710	 31.99	0	1837188..1837709	+	173	167627935	-	Fphi_1709	-	inorganic diphosphatase
1711	 29.07	-1	1837797..1838336	+	179	167627936	-	Fphi_1710	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
1712	 28.93	-1	1838345..1838980	+	211	167627937	-	Fphi_1711	-	hypothetical protein
1713	 32.08	0	1838967..1839842	+	291	167627938	-	Fphi_1712	-	hypothetical protein
1714	 36.20	+1	1839861..1840592	+	243	167627939	-	Fphi_1713	-	ABC transporter, ATP-binding protein
1715	 29.65	0	1840625..1841221	+	198	167627940	-	Fphi_1714	-	fumarylacetoacetate hydrolase
1716	 33.55	0	1841229..1843061	+	610	167627941	-	Fphi_1715	-	S-methyl-5-thioadenosine phosphorylase
1717	 33.59	0	1843064..1843840	+	258	167627942	-	Fphi_1716	-	tRNA pseudouridine synthase A
1718	 35.46	0	1843974..1845524	+	516	167627943	-	Fphi_1717	-	bifunctional GMP synthase/glutamine amidotransferase protein
1719	 34.73	0	1845607..1847463	+	618	167627944	-	Fphi_1718	-	1-deoxy-D-xylulose-5-phosphate synthase
1720	 31.57	0	1847582..1848205	+	207	167627945	-	Fphi_1719	-	GDSL-like lipolytic enzyme
1721	 31.67	0	1848217..1848819	-	200	167627946	-	Fphi_1720	-	CBS domain-containing protein
1722	 35.72	0	1849037..1850083	+	348	167627947	-	Fphi_1721	-	Holliday junction DNA helicase B
1723	 28.31	-1	1850099..1850854	-	251	167627948	-	Fphi_1722	-	hypothetical protein
1724	 27.45	-1	1850941..1851144	-	67	167627949	-	Fphi_1723	-	XRE family transcriptional regulator
1725	 28.49	-1	1851155..1851691	-	178	167627950	-	Fphi_1724	-	hypothetical protein
1726	 27.22	-1	1851822..1852769	+	315	167627951	-	Fphi_1725	-	hypothetical protein
1727	 28.57	-1	1852779..1854038	-	419	167627952	-	Fphi_1726	-	sugar:cation symporter family protein
1728	 29.53	0	1854249..1855721	+	490	167627953	-	Fphi_1727	-	alkaline phosphatase
1729	 29.75	0	1855738..1856631	+	297	167627954	-	Fphi_1728	-	drug/metabolite transporter superfamily protein
1730	 33.93	0	1856717..1857730	+	337	167627955	-	Fphi_1729	-	phenylalanyl-tRNA synthetase subunit alpha
1731	 32.24	0	1857751..1860123	+	790	167627956	-	Fphi_1730	-	phenylalanine--tRNA ligase
1732	 28.40	-1	1860159..1860584	-	141	167627957	-	Fphi_1731	-	regulatory protein
1733	 32.92	0	1860723..1861940	+	405	167627958	-	Fphi_1732	-	hypothetical protein
1734	 31.86	0	1861943..1862689	+	248	167627959	-	Fphi_1733	-	zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein
1735	 31.10	0	1862711..1863697	-	328	167627960	-	Fphi_1734	-	lipoprotein
1736	 30.82	0	1863847..1865277	-	476	167627961	-	Fphi_1735	-	cardiolipin synthetase
1737	 29.91	0	1865342..1866772	-	476	167627962	-	Fphi_1736	-	cardiolipin synthase
1738	 31.96	0	1866826..1868061	-	411	167627963	-	Fphi_1737	-	major facilitator superfamily metabolite/H(+) symporter
1739	 33.68	0	1868128..1868985	+	285	167627964	-	Fphi_1738	-	nucleotide-binding protein
1740	 32.10	0	1869002..1869568	+	188	167627965	-	Fphi_1739	-	deoxycytidine triphosphate deaminase
1741	 31.53	0	1869938..1871596	-	552	167627966	-	Fphi_1740	-	transposase X
1742	 30.26	0	1871617..1872561	-	314	167627967	-	Fphi_1741	-	integrase, catalytic region
1743	 25.66	-2	1872629..1873345	-	238	167627968	-	Fphi_1742	-	hypothetical protein
1744	 28.02	-1	1873435..1873848	-	137	167627969	-	Fphi_1743	-	hypothetical protein
1745	 32.46	0	1873845..1874414	-	189	167627970	-	Fphi_1744	-	invertase/recombinase like protein
1746	 32.14	0	1874593..1874676	+	27	167627971	-	Fphi_1745	-	ArsB arsenite/antimonite exporter
1747	 32.86	0	1874690..1875109	+	139	167627972	-	Fphi_1746	-	arsenate reductase
1748	 34.66	0	1875289..1876869	+	526	167627973	-	Fphi_1747	-	sulphate transporter
1749	 28.87	-1	1876912..1877247	-	111	167627974	-	Fphi_1748	-	hypothetical protein
1750	 30.70	0	1877359..1878192	-	277	167627975	-	Fphi_1749	-	mechanosensitive ion channel family protein
1751	 30.26	0	1878201..1879145	-	314	167627976	-	Fphi_1750	-	integrase, catalytic region
1752	 24.43	-2	1879213..1879605	-	130	167627977	-	Fphi_1919	-	putative lipoprotein
1753	 31.70	0	1879626..1880177	-	183	167627978	-	Fphi_1751	-	rare lipoprotein B family protein
1754	 32.56	0	1880187..1882628	-	813	167627979	-	Fphi_1752	-	leucyl-tRNA synthetase
1755	 34.79	0	1882786..1883196	-	136	167627980	-	Fphi_1753	-	hypothetical protein
1756	 29.90	0	1883196..1883777	-	193	167627981	-	Fphi_1754	-	hypothetical protein
1757	 27.25	-1	1883814..1884224	+	136	167627982	-	Fphi_1755	-	mutator protein
1758	 26.85	-1	1884336..1884767	-	143	167627983	-	Fphi_1756	-	hypothetical protein
1759	 31.23	0	1884946..1886274	+	442	167627984	-	Fphi_1758	-	amino acid transporter (AAT) family protein
1760	 28.13	-1	1886259..1886681	-	140	167627985	-	Fphi_1757	-	hypothetical protein
1761	 33.94	0	1886674..1887000	-	108	167627986	-	Fphi_1759	-	thioredoxin
1762	 30.57	0	1887003..1887689	-	228	167627987	-	Fphi_1760	-	putative lipoprotein
1763	 30.28	0	1887780..1888925	-	381	167627988	-	Fphi_1761	-	SufS activator complex, SufD subunit
1764	 34.40	0	1888939..1889688	-	249	167627989	-	Fphi_1762	-	SufS activator complex, SufC subunit
1765	 35.89	0	1889723..1891168	-	481	167627990	-	Fphi_1763	-	cysteine desulfurase activator complex subunit SufB
1766	 32.60	0	1891172..1891582	-	136	167627991	-	Fphi_1764	-	transcriptional regulator
1767	 29.40	-1	1891735..1893108	+	457	167627992	-	Fphi_1765	-	potassium transporter peripheral membrane component
1768	 31.99	0	1893178..1894596	+	472	167627993	-	Fphi_1766	-	amino acid antiporter
1769	 25.03	-2	1894596..1895522	+	308	167627994	-	Fphi_1767	-	hypothetical protein
1770	 33.33	0	1895597..1895815	-	72	167627995	-	Fphi_1768	-	translation initiation factor IF-1
1771	 31.91	0	1895970..1896812	+	280	167627996	-	Fphi_1769	-	hypothetical protein
1772	 26.22	-2	1896809..1897075	+	88	167627997	-	Fphi_1930	-	hypothetical protein
1773	 34.20	0	1897156..1898532	+	458	167627998	-	Fphi_1770	-	signal recognition particle protein
1774	 33.51	0	1898559..1899671	+	370	167627999	-	Fphi_1771	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1775	 30.84	0	1899690..1900010	+	106	167628000	-	Fphi_1772	-	Bor lipoprotein
1776	 28.48	-1	1899994..1900302	+	102	167628001	-	Fphi_1773	-	Iss
1777	 33.50	0	1900568..1901155	-	195	167628002	-	Fphi_1774	-	NADPH-quinone reductase (modulator of drug activity B)
1778	 34.24	0	1901174..1902274	-	366	167628003	-	Fphi_1775	-	hypothetical protein
1779	 35.39	0	1902456..1903232	+	258	167628004	-	Fphi_1776	-	DNA-(apurinic or apyrimidinic site) lyase
1780	 26.91	-1	1903236..1903967	+	243	167628005	-	Fphi_1777	-	hypothetical protein
1781	 30.56	0	1904013..1904516	+	167	167628006	-	Fphi_1778	-	kinase-like protein
1782	 28.47	-1	1904516..1905235	+	239	167628007	-	Fphi_1779	-	hypothetical protein
1783	 35.84	0	1905271..1906629	+	452	167628008	-	Fphi_1780	-	glutathione reductase
1784	 36.45	+1	1906639..1906959	+	106	167628009	-	Fphi_1781	-	hypothetical protein
1785	 35.48	0	1907104..1908639	+	511	167628010	-	Fphi_1782	-	alkaline phosphatase
1786	 33.26	0	1908640..1909977	-	445	167628011	-	Fphi_1783	-	ATP-dependent RNA helicase
1787	 29.95	0	1910109..1910729	+	206	167628012	-	Fphi_1784	-	GTP cyclohydrolase I
1788	 29.02	-1	1910737..1911432	+	231	167628013	-	Fphi_1785	-	hypothetical protein
1789	 30.71	0	1911532..1911951	+	139	167628014	-	Fphi_1786	-	hypothetical protein
1790	 29.46	-1	1911992..1912921	+	309	167628015	-	Fphi_1787	-	carbon-nitrogen family hydrolase
1791	 35.12	0	1912992..1914056	+	354	167628016	-	Fphi_1788	-	aldo/keto reductase family protein
1792	 34.26	0	1914128..1915201	+	357	167628017	-	Fphi_1789	-	aldo/keto reductase family protein
1793	 30.15	0	1915271..1916431	+	386	167628018	-	Fphi_1790	-	major facilitator transporter
1794	 30.27	0	1916432..1916986	-	184	167628019	-	Fphi_1791	-	para-aminobenzoate synthase component II
1795	 30.33	0	1916988..1918751	-	587	167628020	-	Fphi_1792	-	chorismate binding family protein
1796	 27.79	-1	1918744..1920114	-	456	167628021	-	Fphi_1793	-	AMP-binding enzyme
1797	 30.23	0	1920195..1920548	+	117	167628022	-	Fphi_1794	-	dihydroneopterin aldolase
1798	 29.70	0	1920550..1921815	+	421	167628023	-	Fphi_1795	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase
1799	 31.70	0	1921828..1922748	+	306	167628024	-	Fphi_1796	-	lipase/esterase
1800	 29.74	0	1922765..1923265	+	166	167628025	-	Fphi_1797	-	hypothetical protein
1801	 30.85	0	1923267..1924553	-	428	167628026	-	Fphi_1798	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1802	 32.27	0	1924644..1925585	+	313	167628027	-	Fphi_1799	-	biotin synthase
1803	 31.01	0	1925579..1926697	+	372	167628028	-	Fphi_1800	-	8-amino-7-oxononanoate synthase
1804	 27.07	-1	1926684..1927418	+	244	167628029	-	Fphi_1801	-	biotin synthesis protein BioC
1805	 30.10	0	1927422..1928102	+	226	167628030	-	Fphi_1803	-	dethiobiotin synthase
1806	 26.90	-1	1928045..1929007	-	320	167628031	-	Fphi_1802	-	biotin-(acetyl-CoA-carboxylase) ligase
1807	 34.80	0	1929031..1929915	-	294	167628032	-	Fphi_1804	-	ROK family protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.